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Identification of Heterodera schachtii on sugar beet in Xinjiang Uygur Autonomous Region of China
PENG Huan, LIU Hui, GAO Li, JIANG Ru, LI Guang-kuo, GAO Hai-feng, Wu Wei, WANG Jun, Zhang Yu, HUANG Wen-kun, KONG Ling-an, PENG De-liang
2022, 21 (6): 1694-1702.   DOI: 10.1016/S2095-3119(21)63797-8
Abstract258)      PDF in ScienceDirect      
The sugar beet cyst nematode, Heterodera schachtii, is a major parasite of sugar beet which has been recognized and listed as a quarantine nematode in China and more than 20 countries and regions worldwide.  A survey for important nematodes was undertaken in the sugar beet planting area of China during 2015–2018, and numerous cysts were collected from sugar beet fields in Xinyuan County, Xinjiang Uygur Autonomous Region of China.  The observations of morphological and morphometric characteristics revealed that cysts, vulval cones and second-stage juveniles of the Xinjiang population were in the same range of each other and within those of other reported H. schachtii populations.  Molecular analysis of rDNA-ITS, 28S-D2/D3 and mtDNA cytochrome c oxidase subunit 1 (COI) gene sequences suggested that the Xinjiang population clustered in a branch with those foreign populations, and the sequence similarity was as high as 99.81–100%.  Moreover, this result was confirmed by PCR assay with species-specific primer SHF6 and rDNA2 of H. schachtii, and the pathogenicity test confirmed successful Xinjiang population reproduction in both plant hosts.  In conclusion, based on morphological and molecular characterization, this study confirmed that the cyst nematode population collected from sugar beet fields in Xinjiang is H. schachtii.  As far as we know, this is the first report of H. schachtii on sugar beets in Xinjiang, China.
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First record of the golden potato nematode Globodera rostochiensis in Yunnan and Sichuan provinces of China
JIANG Ru, PENG Huan, LI Yun-qing, LIU Hui, ZHAO Shou-qi, LONG Hai-bo, HU Xian-qi, GE Jian-jun, LI Xing-yue, LIU Miao-yan, SHAO Bao-lin, PENG De-liang
2022, 21 (3): 898-899.   DOI: 10.1016/S2095-3119(21)63845-5
Abstract461)      PDF in ScienceDirect      
The potato cyst nematodes (PCN) Globodera rostochiensis (Wollenweber) Skarbilovich, 1959 is considered the most damaging nematode pest of potato worldwide that causes significant yield losses, and this nematode is recognized and listed as a quarantine nematode in many countries (EPPO 2017).  China is currently the largest producer of potato in the world, while the total production is also the highest (Guan and Cai 2019).  The survey for cyst nematodes on potato were conducted in Yunnan and Sichuan provinces of China during 2018–2020, numerous cysts were observed on potato roots in Huize County and Ludian County of Yunnan Province, Zhaojue County and Yuexi County of Sichuan Province.  Cysts and second-stage juveniles (J2s) were isolated from each soil sample using the Cobb decanting and sieving method.  The morphology of cysts and J2s and molecular analysis established the identity of this species as golden cyst nematode Globodera rostochiensis (Subbotin et al. 2010).  For morphological analysis, the cysts were characterized by smoothly rounded with a small projecting neck, brown and golden color, terminal cone was absent and circumfenestrate.  The key morphometrics of cysts (n=25) were: length excluding neck 705±24 (689–747) μm, width 698±28 (678–759) μm, number of cuticular ridges between anus and vulval fenestra 17.3±1.7 (14–19); fenestral diameter 13.6±1.1 (12.25–15.45) μm; distance from anus to the edge of fenestra 63.7±11.3 (48.23–79.14) μm; Granek’s ratio 4.7±0.7 (3.92–5.75).  The key morphometrics of J2s (n=25): body length 453.9±16.6 (440–496) μm, stylet length 21.9±1.0 (20.3–24.3) μm, tail length 51.1±3.2 (45.5–55.5) μm, and hyaline region length 24.4±2.5 (21.7–29.9) μm.  Morphology of the cysts and J2 were consistent with those of G. rostochiensis (Subbotin et al. 2010; EPPO 2017).  Moreover, the identification result was confirmed by PCR using universal primers TW81 (5´-GTTTCCGTAGGTGAACCTGC-3´) and AB28 (5´-ATATGCTTAAGTTCAGCGGGT-3´) for ITS region and D2A (5´-TTTTTTGGGCATCCTGAGGTTTAT-3´) D3B (5´-AGCACCTAAACTTAAAACATAATGAAAATG-3´) for rDNA-28S region, respectively.  The ITS rDNA sequences (GenBank accessions MZ042365, MZ042366, MZ042369, and MZ042370) exhibited 99.83% identity match to G. rostochiensis sequences available in the GenBank (GQ294513).  Sequence from the 28S region (GenBank accessions MZ057595, MZ057596, MZ057599, and MZ057600) was 99.33% similar to those of G. rostochiensis isolate from MF773722.  The species was also confirmed with species-specific primers ITS5 (5´-GGAAGTAAAAGTCGTAACAAGG-3´) and PITSr3 (5´-AGCGCAGACATGCCGCAA-3´) (Bulman and Marshall 1997), a single 434-bp fragment was obtained from Huize, Ludian, Zhaojue and Yuexi populations.  The pathog enicity testing of Huize, Ludian, Zhaojue and Yuexi, three weeks-old potato plants (cv. Qinshu 9)

were inoculated with 2 000 eggs, and cultured in an incubator at 23°C/20°C with a 16 h/8 h light/dark photoperiod.  After three months inoculation, 36±7.2 cysts and females were extracted from the infested potato roots, no females and cysts were observed on control plants.  


This is the first report of potato golden cyst nematode G. rostochiensis in China.  



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Modeling the biomass of energy crops: Descriptions, strengths and prospective
JIANG Rui, WANG Tong-tong, SHAO Jin, GUO Sheng, ZHU Wei, YU Ya-jun, CHEN Shao-lin, HATANO Ryusuke
2017, 16 (06): 1197-1210.   DOI: 10.1016/S2095-3119(16)61592-7
Abstract996)      PDF in ScienceDirect      
The assessment of the biomass of energy crops has garnered widespread interest since renewable bioenergy may become a substantial proportion of the future energy supply, and modeling has been widely used for the simulation of energy crops yields.  A literature survey revealed that 23 models have been developed or adapted for simulating the biomass of energy crops, including Miscanthus, switchgrass, maize, poplar, willow, sugarcane, and Eucalyptus camaldulensis.  Three categories (radiation model, water-controlled crop model, and integrated model with biochemical and photosynthesis and respiration approaches) were addressed for the selected models according to different principles or approaches used to simulate biomass production processes.  EPIC, ALMANAC, APSIM, ISAM, MISCANMOD, MISCANFOR, SILVA, DAYCENT, APEX and SWAT are radiation models based on a radiation use efficiency approach (RUE) with few empirical and statistical parameters.  The AquaCrop model is a typical water-crop model that emphasizes crop water use, the expression of canopy cover, and the separation of evapotranspiration to soil evaporation and plant transpiration to drive crop growth.  CANEGRO, 3PG, CropSyst and DSSAT are integrated models that use photosynthesis and respiration approaches.  SECRETS, LPJmL, Agro-BGC, Agro-IBIS, and WIMOVAC/BioCro, DNDC, DRAINMOD-GRASS, and AgTEM are integrated models that use biochemical approaches.  Integrated models are mainly mechanistic models or combined with functional models, which are dynamic with spatial and temporal patterns but with complex parameters and large amounts of input data.  Energy crop models combined with process-based models, such as EPIC in SWAT and CANEGRO in DSSAT, provide good examples that consider the biophysical, socioeconomic, and environmental responses and address the sustainability and socioeconomic goals for energy crops.  The use of models for energy crop productivity is increasing rapidly and encouraging; however, relevant databases, such as climate, land use/land cover, soil, topography, and management databases, are scarce.  Model structure and design assumptions, as well as input parameters and observed data, remain a challenge for model development and validation.  Thus, a comprehensive framework, which includes a high-quality field database and an uncertainty evaluation system, needs to be established for modeling the biomass of energy crops.
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A missense mutation in the Sin3 subunit of Rpd3 histone deacetylase complex bypasses the requirement for FNG1 in wheat scab fungus
Xu Huai-jian, Jiang Ruo-xuan, Fu Xian-hui, Wang Qin-hu, Shi Yu-tong, Zhao Xiao-fei, Jiang Cong, Jiang Hang
DOI: 10.1016/j.jia.2024.01.006 Online: 01 February 2024
Abstract57)      PDF in ScienceDirect      
The Rpd3 histone deacetylase complex is a multiple-subunit complex that mediates the regulation of chromatin accessibility and gene expression. Sin3, the largest subunit of Rpd3 complex, is conserved in a broad range of eukaryotes. Despite being a molecular scaffold for complex assembly, the functional sites and mechanism of action of Sin3 remain unexplored. In this study, we functionally characterized a glutamate residue (E810) in FgSin3, the ortholog of yeast Sin3 in Fusarium graminearum (known as wheat scab fungus). Our findings indicate that E810 was important for the functions of FgSin3 in regulating vegetative growth, sexual reproduction, wheat infection, and DON biosynthesis. Furthermore, the E810K missense mutation restored the reduced H4 acetylation caused by the deletion of FNG1, the ortholog of the human inhibitor of growth (ING1) gene in F. graminearum. Correspondingly, the defects of the fng1 mutant were also partially rescued by the E810K mutation in FgSin3. Sequence alignment and evolutionary analysis revealed that E810 residue is well-conserved in fungi, animals, and plants. Based on Alphafold2 structure modeling, E810 localized on the FgRpd3-FgSin3 interface for the formation of a hydrogen bond with FgRpd3. Mutation of E810 disrupts the hydrogen bond and likely affects the FgRpd3-FgSin3 interaction. Taken together, E810 of FgSin3 is functionally associated with Fng1 in the regulation of H4 acetylation and related biological processes, probably by affecting the assembly of the Rpd3 complex.
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