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Variations in chlorophyll content, stomatal conductance and photosynthesis in Setaria EMS mutants
TANG Chan-juan, LUO Ming-zhao, ZHANG Shuo, JIA Guan-qing, TANG Sha, JIA Yan-chao, ZHI Hui, DIAO Xian-min
2023, 22 (6): 1618-1630.   DOI: 10.1016/j.jia.2022.10.014
Abstract298)      PDF in ScienceDirect      

Chlorophyll (Chl) content, especially Chl b content, and stomatal conductance (Gs) are key factors that greatly affect net photosynthetic rate (Pn).  Setaria italica, a diploid C4 panicoid species with a simple genome and high transformation efficiency, has been widely accepted as a model in photosynthesis and drought-tolerance research.  In the current study, Chl content, Gs, and Pn of 48 Setaria mutants induced by ethyl methanesulfonate were characterized.  A total of 24, 34 and 35 mutants had significant variations in Chl content, Gs, and Pn, respectively. Correlation analysis showed that positive correlation exists between increased Gs and increased Pn, and a weak correlation between decreased Chl b content and decreased Pn was also found. Remarkably, two mutants behaved significantly decreased Chl b content but increased Pn when compared that of Yugu 1. Seven mutants behaved significantly decreased Gs but non-decreasing Pn when compared that of Yugu 1.  The current study thus identified various genetic lines, further exploration of which would be beneficial to elucidate the relationship between Chl content, Gs and Pn and the mechanism underlying why C4 species are efficient at photosynthesis and water saving.

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Identification of blast-resistance loci through genome-wide association analysis in foxtail millet (Setaria italica (L.) Beauv.)
LI Zhi-jiang, JIA Guan-qing, LI Xiang-yu, LI Yi-chu, ZHI Hui, TANG Sha, MA Jin-feng, ZHANG Shuo, LI Yan-dong, SHANG Zhong-lin, DIAO Xian-min
2021, 20 (8): 2056-2064.   DOI: 10.1016/S2095-3119(20)63196-3
Abstract198)      PDF in ScienceDirect      
Blast disease caused by the fungus Magnaporthe grisea results in significant yield losses of cereal crops across the world.  To date, very few regulatory genes contributing to blast resistance in grass species have been identified and the genetic basis of blast resistance in cereals remains elusive.  Here, a core collection of foxtail millet (Setaria italica) containing 888 accessions was evaluated through inoculation with the blast strain HN-1 and a genome-wide association study (GWAS) was performed to detect regulators responsible for blast disease resistance in foxtail millet.  The phenotypic variation of foxtail millet accessions inoculated with the blast strain HN-1 indicated that less than 1.60% of the samples were highly resistant, 35.25% were moderately resistant, 57.09% were moderately susceptible, and 6.08% were highly susceptible.  The geographical pattern of blast-resistant samples revealed that a high proportion of resistant accessions were located in lower latitude regions where the foxtail millet growing season has higher rain precipitation.  Using 720 000 SNP markers covering the Setaria genome, GWAS showed that two genomic loci from chromosomes 2 and 9 were significantly associated with blast disease resistance in foxtail millet.  Finally, eight putative genes were identified using rice blast-related transcriptomic data.  The results of this work lay a foundation for the foxtail millet blast resistance biology and provide guidance for breeding practices in this promising crop species and other cereals.
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Genetic variation of yellow pigment and its components in foxtail millet (Setaria italica (L.) P. Beauv.) from different eco-regions in China
YANG Yan-bing, JIA Guan-qing, DENG Li-gang, QIN Ling, CHEN Er-ying, CONG Xin-jun, ZOU Renfeng, WANG Hai-lian, ZHANG Hua-wen, LIU Bin, GUAN Yan-an, DIAO Xian-min, YIN Yan-ping
2017, 16 (11): 2459-2469.   DOI: 10.1016/S2095-3119(16)61598-8
Abstract834)      PDF in ScienceDirect      
    Kernel color is an important trait for assessing the commercial and nutritional quality of foxtail millet.  Yellow pigment content (YPC) and carotenoid components (lutein and zeaxanthin) of 270 foxtail millet accessions, including 50 landraces and 220 improved cultivars, from four different eco-regions in China were surveyed using spectrophotometry and high performance liquid chromatography methods.  Results indicated that YPC had rich variance, ranging from 1.91 to 28.54 mg kg–1, with an average value of 17.80 mg kg–1.  The average YPC of improved cultivars (18.31 mg kg–1) was significantly higher than that of landraces (15.51 mg kg–1).  The YPC in cultivars from the Loess Plateau spring sowing region (LPSSR) was the highest (20.59 mg kg–1), followed by the North China summer sowing region (NCSSR, 18.25 mg kg–1), the northeast spring sowing region (NSSR, 17.25 mg kg–1), and the Inner Mongolia Plateau spring sowing region (IMPSSR, 13.92 mg kg–1).  The variation coefficients of YPC in cultivars from NSSR, LPSSR, and IMPSSR were higher than that from NCSSR.  A similar carotenoid profile was also obtained for 270 foxtail millet cultivars.  Lutein and zeaxanthin accounted for approximately 55–65% of YPC in accessions.  The lutein content was higher than zeaxanthin content in all cultivars.  The ratio of lutein to zeaxanthin ranged from 1.51 to 6.06 with an average of 3.34.  YPC was positively correlated with lutein (r=0.935, P<0.01), zeaxanthin (r=0.808, P<0.01), and growth duration (r=0.488, P<0.01), whereas it was negatively correlated with grain protein (r=−0.332, P<0.01) and 1 000-kernel weight (r=−0.153, P<0.05).  Our study is useful for screening and selecting cultivars with high levels of yellow pigment and for enhancing phytochemical concentrations in breeding programs.
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Genome-Wide Transcriptional Analysis of Yield and Heterosis-Associated Genes in Maize (Zea mays L.)
ZHANG Ti-fu, LI Bo, ZHANG Deng-feng, JIA Guan-qing, LI Zhi-yong, WANG Shou-cai
2012, 12 (8): 1245-1256.   DOI: 10.1016/S1671-2927(00)8653
Abstract1376)      PDF in ScienceDirect      
Heterosis has contributed greatly to yield in maize, but the nature of its contribution is not completely clear. In this study, two strategies using whole-genome oligonucleotide microarrays were employed to identify differentially expressed genes (DEGs) associated with heterosis and yield. The analysis revealed 1 838 heterosis-associated genes (HAGs), 265 yieldassociated genes (YAGs), and 85 yield heterosis-associated genes (YHAGs). 37.1% of HAGs and 22.4% of YHAGs expressed additively. The remaining genes expressed non-additively, including those with high/low-parent dominance and over/under dominance, which were prevalent in this research. Pathway enrichment analysis and quantitative trait locus (QTL) co-mapping demonstrated that the metabolic pathways for energy and carbohydrates were the two main enriched pathways influencing heterosis and yield. Therefore, the DEGs participating in energy and carbohydrate metabolism were considered to contribute to heterosis and yield significantly. The investigation of potential groups of HAGs, YAGs, and YHAGs might provide valuable information for exploiting heterosis to improve yield in maize breeding. In addition, our results support the view that heterosis is contributed by multiple, complex molecular mechanisms.
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