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Chromosome-level genome assembly of Cylas formicarius provides insights into its adaptation and invasion mechanisms
HUA Jin-feng, ZHANG Lei, HAN Yong-hua, GOU Xiao-wan, CHEN Tian-yuan, HUANG Yong-mei, LI Yan-qing, MA Dai-fu, LI Zong-yun
2023, 22 (3): 825-843.   DOI: 10.1016/j.jia.2022.08.027
Abstract265)      PDF in ScienceDirect      

Cylas formicarius is one of the most important pests of sweet potato worldwide, causing considerable ecological and economic damage.  This study improved the effect of comprehensive management and understanding of genetic mechanisms by examining the functional genomics of Cformicarius.  Using Illumina and PacBio sequencing, this study obtained a chromosome-level genome assembly of adult weevils from lines inbred for 15 generations.  The high-quality assembly obtained was 338.84 Mb, with contig and scaffold N50 values of 14.97 and 34.23 Mb, respectively.  In total, 157.51 Mb of repeat sequences and 11 907 protein-coding genes were predicted.  A total of 337.06 Mb of genomic sequences was located on the 11 chromosomes, accounting for 99.03% of the total length of the associated chromosome.  Comparative genomic analysis showed that Cformicarius was sister to Dendroctonus ponderosae, and Cformicarius diverged from Dponderosae approximately 138.89 million years ago (Mya).  Many important gene families expanded in the Cformicarius genome were involved in the detoxification of pesticides, tolerance to cold stress and chemosensory system.  To further study the role of odorant-binding proteins (OBPs) in olfactory recognition of Cformicarius, the binding assay results indicated that CforOBP4–6 had strong binding affinities for sex pheromones and other ligands.  The high-quality Cformicarius genome provides a valuable resource to reveal the molecular ecological basis, genetic mechanism, and evolutionary process of major agricultural pests; it also offers new ideas and new technologies for ecologically sustainable pest control.

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Long term effects of artificial rearing before weaning on the growth performance, ruminal microbiota and fermentation of fattening lambs
HUANG Wen-qin, CUI Kai, HAN Yong, CHAI Jian-min, WANG Shi-qin, LÜ Xiao-kang, DIAO Qi-yu, ZHANG Nai-feng
2022, 21 (4): 1146-1160.   DOI: 10.1016/S2095-3119(21)63763-2
Abstract176)      PDF in ScienceDirect      
Early life intervention is important to shape the gut microbiome profiles of adult animals due to the tremendous alteration of diet components.  Nevertheless, there is still no unified understanding about its long-term effects in lambs.  In this study, sixty 20-day-old lambs were assigned into ewe-rearing (ER) and artificial-rearing (AR) treatments to evaluate the effects of AR strategy on ruminal microbiota, fermentation, and morphology of pre-weaning lambs (from 20 to 60 days of age) and its long-term effects in the fattening stage (from 61 to 180 days of age).  During the pre-weaning stage, ER lambs were breastfed and supplemented starter, while AR lambs were artificially fed with milk replacer and starter.  During the fattening stage, all lambs in both treatments were fed with the same fattening diets.  At 60, 120 and 180 days of age, 6 lambs from each group were slaughtered to collect rumen content and tissue samples.  Compared with ER lambs, the dry matter feed intakes of AR lambs increased (P<0.05) from 20 to 180 days of age, companying an increased average daily gain (ADG) from 61 to 120 days of age (P<0.05) and from 121 to 180 days of age (0.05<P<0.1).  Although there was no difference in short-chain fatty acid (SCFA, including acetate, propionate, and butyrate) between treatments before weaning (P>0.05), it was higher (P<0.05) in AR lambs compared with ER lambs at the fattening stage.  The rumen keratin layer of AR lambs was thinner (P<0.05) than that of ER lambs.  Along with lamb growth from 60 to 180 days of age, the differences in rumen bacterial diversity between AR and ER treatments grew more distinct (P<0.05).  Compared with ER lambs, AR lambs increased (P<0.05) rumen bacteria abundance, such as phylum Spirochaetes and genus Treponema at 60 days of age, phylum Actinobacteria and genus Succiniclasticum at 120 days of age, and phylum Proteobacteria at 180 days of age, but decreased genus Selenomonas from 60 to 180 days of age, and Anaerovibrio at 180 days of age.  In summary, the early interventions before weaning could improve dry matter feed intake of lambs, which triggered robust rumen development and produced positive long-term effects on rumen fermentation and noticeable weight gain of fattening lambs.  It suggests that the artificial rearing strategy is effective in improving rumen fermentation and microbial maturity of intensive fattening lambs.
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Effects of silicon amendment on the occurrence of rice insect pests and diseases in a field test
HAN Yong-qiang, WEN Ji-hui, PENG Zhao-pu, ZHANG De-yong, HOU Mao-lin
2018, 17 (10): 2172-2181.   DOI: 10.1016/S2095-3119(18)62035-0
Abstract347)      PDF (1034KB)(610)      
Rice is one of the most important staple foods for the world population, but it is attacked by a number of destructive pests.  While evidence from greenhouse and laboratory tests has shown that silicon (Si) amendment can confer enhanced resistance to pests in rice, few studies have directly demonstrated the Si-mediated protection from pests in a field situation.  In this study, field plots with silicon amendments at 0, 75, 150 and 300 kg SiO2 ha–1 in early- and late-season rice were employed to evaluate the effects of silicon amendment on the occurrence of major insect pests and diseases and rice yield.  Compared with the control plots without silicon amendment, plant damage by stem borer and leaf folder and population size of planthopper were significantly lower in three to five of the seven monitoring observations in each season in the plots amended with 300 kg SiO2 ha–1.  The disease index of rice blast in the early-season rice was lower in the plots amended with Si at 300 kg SiO2 ha–1 than in the control plots, while Si protection from rice blast in the late-season rice and from rice sheath blight in the early-season rice were not apparent.  An insignificant increase of rice yield by 16.4% (604 kg ha–1) was observed in the plots amended with 300 kg SiO2 ha–1 over the control plots.  Our results indicate that Si amendment at 300 kg SiO2 ha–1 can provide substantial protection from some of the rice pests under field conditions.  These findings support the recommendation of silicon amendment as a key component of integrated management of rice pests.
 
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Carbendazim sensitivity in populations of Colletotrichum gloeosporioides complex infecting strawberry and yams in Hubei Province of China
HAN Yong-chao, ZENG Xiang-guo, XIANG Fa-yun, ZHANG Qing-hua, GUO Cong, CHEN Feng-ying, GU Yu-chen
2018, 17 (06): 1391-1400.   DOI: 10.1016/S2095-3119(17)61854-9
Abstract539)      PDF in ScienceDirect      
The ascomycete fungus Colletotrichum gloeosporioides is a devastating plant pathogen with a wide host range and worldwide distribution.  Carbendazim has been widely used to control anthracnose caused by the C. gloeosporioides complex in China for more than 30 years and resistance to carbendazim has been reported in China.  A total of 125 Colletotrichum isolates of strawberry and yam were collected from different geographical regions in Hubei Province, China.  Approximately 52.8% of Colletotrichum spp. isolates showed resistance to carbendazim.  The isolates tested in this study belong to four species, and the frequencies of resistant isolates differed across Colletotrichum species.  Resistant isolates were found in C. siamense and C. fructicola.  In contrast, all isolates of C. gloeosporioides and C. aenigma were sensitive to carbendazim.  Highly carbendazim-resistant isolates harbored the E198A mutation in the β-tubulin 2 (TUB2) gene, whereas moderately carbendazim-resistant isolates harbored the F200Y mutation in the TUB2 gene.  Carbendazim-sensitive Colletotrichum isolates in this study were not genetically similar enough to form a separate cluster from resistant isolates.  The result of this study emphasizes the importance of knowing which Colletotrichum sp. is present, when strategies for disease control are made.
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