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Identification of the BTA8 gene reveals the contribution of natural variation to tiller angle in rice
Junrong Liu, Xingyu Wang, Jing Wang, Junhua Ye, Mengchen Zhang, Qun Xu, Yaolong Yang, Xinghua Wei, Baoyan Jia, Yue Feng
2024, 23 (8): 2868-2871.   DOI: 10.1016/j.jia.2024.04.008
Abstract143)      PDF in ScienceDirect      
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Insight into the effect of geographic location and intercropping on contamination characteristics and exposure risk of phthalate esters (PAEs) in tea plantation soils
Jie Li, Shanjie Han, Ruhang Xu, Xuchen Zhang, Junquan Liang, Mengxin Wang, Baoyu Han
2024, 23 (11): 3896-3911.   DOI: 10.1016/j.jia.2024.03.018
Abstract60)      PDF in ScienceDirect      

Phthalate esters (PAEs) are an emerging pollutant due to widespread distribution in environmental mediums that have attracted widespread attention over recent years.  However, there is little information about tea plantation soil PAEs.  A total of 270 soil samples collected from 45 tea plantations in the major high-quality tea-producing regions of Jiangsu, Zhejiang, and Anhui provinces in China were analyzed for seven PAEs.  The detection frequency of PAEs in tea plantation soil was 100%.  DBP, DEHP, and DiBP were the main congeners in tea plantation soil.  The PAEs concentrations in the upper soil were significantly higher than those in the lower soil.  The concentration of tea plantation soil PAEs in Jiangsu Province was significantly lower than those in Zhejiang and Anhui provinces.  Intercropping with chestnuts can effectively reduce the contamination level of PAEs in tea plantation soil.  Correlation analysis, redundancy analysis, partial correlation analysis, and structural equation modeling methods further confirmed the strong direct influence of factors such as chestnut–tea intercropping, temperature, and agricultural chemicals on the variation of PAEs in tea plantation soil.  The health and ecological risk assessments indicated that non-carcinogenic risk was within a safe range and that there was a high carcinogenic risk via the dietary pathway, with DBP posing the highest ecological risk. 

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Suppression of CsFAD3 in a JA-dependent manner, but not through the SA pathway, impairs drought stress tolerance in tea
Na Chang, Xiaotian Pi, Ziwen Zhou, Yeyun Li, Xianchen Zhang
2024, 23 (11): 3737-3750.   DOI: 10.1016/j.jia.2024.04.002
Abstract90)      PDF in ScienceDirect      
The growth and yield of tea plants are seriously limited by drought stress.  Fatty acid desaturases (FADs) contribute to the mediation of membrane fluidity in response to different stresses, although the role of ω-3 FAD (Omega-3 fatty acid desaturase)-mediated damage induced by drought stress in tea plants is poorly understood.  In this study, drought stress significantly promoted the synthesis of C18:3 (linolenic acid) and the expression level of CsFAD3.  Yeast experiments further demonstrated that CsFAD3 can convert C18:2 to C18:3, and that the 35S:GFP-CsFAD3 fusion protein was localized in the endoplasmic reticulum of Nicotiana benthamiana cells.  CsFAD3-silenced tea leaves exhibited poor drought tolerance, with a lower Fv/Fm and a higher malondialdehyde (MDA) content than the control plants.  However, transgenic 35S:CsFAD3 Arabidopsis plants showed the opposite phenotypes.  In addition, the jasmonic acid (JA) content and the expression levels of CsLOX2, CsLOX4, CsAOS, CsAOC3 and CsOPR2 were significantly reduced in CsFAD3-silenced leaves under drought stress.  However, no substantial difference in the salicylic acid (SA) content was detected under normal or drought conditions.  An analysis of Atcoi1 (JA receptor) or Atnpr1 (SA receptor) mutant Arabidopsis plants in 35S:CsFAD3 backgrounds further revealed that knockout of Atcoi1 impaired the drought-tolerant phenotypes of CsFAD3 overexpression lines.  Therefore, this study demonstrated that CsFAD3 plays a crucial role in drought tolerance by mediating JA pathways.


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Functional prediction of tomato PLATZ family members and functional verification of SlPLATZ17

Min Xu, Zhao Gao, Dalong Li, Chen Zhang, Yuqi Zhang, Qian He, Yingbin Qi, He Zhang, Jingbin Jiang, Xiangyang Xu, Tingting Zhao
2024, 23 (1): 141-154.   DOI: 10.1016/j.jia.2023.08.003
Abstract188)      PDF in ScienceDirect      

PLATZ is a novel zinc finger DNA-binding protein that plays an important role in regulating plant growth and development and resisting abiotic stress.  However, there has been very little research on the function of this family gene in tomatoes, which limits its application in germplasm resource improvement.  Therefore, the PLATZ gene family was identified and analyzed in tomato, and its roles were predicted and verified to provide a basis for in-depth research on SlPLATZ gene function.  In this study, the PLATZ family members of tomato were identified in the whole genome, and 19 SlPLATZ genes were obtained.  Functional prediction was conducted based on gene and promoter structure analysis and RNA-seq-based expression pattern analysis.  SlPLATZ genes that responded significantly under different abiotic stresses or were significantly differentially expressed among multiple tissues were screened as functional gene resources.  SlPLATZ17 was selected for functional verification by experiment-based analysis.  The results showed that the downregulation of SlPLATZ17 gene expression reduced the drought and salt tolerance of tomato plants.  Tomato plants overexpressing SlPLATZ17 had larger flower sizes and long, thin petals, adjacent petals were not connected at the base, and the stamen circumference was smaller.  This study contributes to understanding the functions of the SlPLATZ family in tomato and provides a reference for functional gene screening.


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Comparative analysis of the ecological fitness and transcriptome between two genotypes of the brown planthopper Nilaparvata lugens
LIU Kai, CHEN Zhan, SU Qin, YUE Lei, CHEN Wei-wen, ZHANG Wen-qing
2020, 19 (6): 1501-1511.   DOI: 10.1016/S2095-3119(19)62768-1
Abstract119)      PDF in ScienceDirect      
Insect quantity is an important index for determining the degree of damage to plants.  The brown planthopper (BPH), Nilaparvata lugens (Stål), is one of the most important rice pests in Asia.  Here, we used two genotypes of BPH, a high-fecundity genotype (HFG) and a low-fecundity genotype (LFG), to measure their ecological fitness and to explore possible causes for genotype differentiation by transcriptome sequencing.  Our results showed that there were significant differences in body weight, egg hatching rate and honeydew secretion between the HFG and LFG, particularly, the number of eggs laid per female was more significant.  Transcriptional analysis showed that a total of 1 966 differentially expressed genes (DEGs) were mainly involved in energy metabolism, carbohydrate and lipid synthesis, insect hormone synthesis and fecundity-related pathways.  Moreover, we found that the phosphorylation levels of AMPK, AKT and FoxO and the synthesis of ecdysone were different between the two genotypes of BPH.  These findings may partially explain the difference in the ecological fitness between HFG and LFG.  This study is the first to compare the differences between two genotypes of BPH and to provide transcriptomic evidence to further understand the fecundity of BPH.
 
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Metabolite of Clostridium perfringens type A, palmitic acid, enhances porcine enteric coronavirus porcine epidemic diarrhea virus infection
Shanshan Qi, Haoyang Wu, Donghua Guo, Dan Yang, Yongchen Zhang, Ming Liu, Jingxuan Zhou, Jun Wang, Feiyu Zhao, Wenfei Bai, Shiping Yu, Xu Yang, Hansong, Li, Fanbo Shen, Xingyang Guo, Xinglin Wang, Wei Zhou, Qinghe Zhu, Xiaoxu Xing, Chunqiu Li, Dongbo Sun
DOI: 10.1016/j.jia.2024.05.014 Online: 31 May 2024
Abstract56)      PDF in ScienceDirect      
The host intestinal microbiota has emerged as the third element in the interactions between hosts and enteric viruses, and potentially affects the infection processes of enteric viruses. However, the interaction of porcine enteric coronavirus with intestinal microorganisms during infection remains unclear. In this study, we used 16S-rRNA-based Illumina NovaSeq high-throughput sequencing to identify the changes in the intestinal microbiota of piglets mediated by porcine epidemic diarrhea virus (PEDV) infection and the effects of the alterations in intestinal bacteria on PEDV infection and its molecular mechanisms. The intestinal microbiota of PEDV-infected piglets had significantly less diversity than the healthy group and different bacterial community characteristics. Among the altered intestinal bacteria, the relative abundance of Clostridium perfringens was significantly increased in the PEDV-infected group. A strain of C. perfringens type A, named DQ21, was successfully isolated from the intestines of healthy piglets. The metabolites of swine C. perfringens type A strain DQ21 significantly enhanced PEDV replication in porcine intestinal epithelial cell clone J2 (IPEC-J2) cells, and PEDV infection and pathogenicity in suckling piglets. Palmitic acid (PA) was identified as one of those metabolites with metabolomic technology, and significantly enhanced PEDV replication in IPEC-J2 cells and PEDV infection and pathogenicity in suckling piglets. PA also increased the neutralizing antibody titer in the immune sera of mice. Furthermore, PA mediated the palmitoylation of the PEDV S protein, which improved virion stability and membrane fusion, thereby enhancing viral infection. Overall, our study demonstrates a novel mechanism of PEDV infection, with implications for PEDV pathogenicity.
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The miR164a targets CsNAC1 to negatively regulate cold tolerance of tea plants (Camellia sinensis)
Siya Li, Lu Cao, Ziwen Zhou, Yaohua Cheng, Xianchen Zhang, Yeyun Li
DOI: 10.1016/j.jia.2024.12.033 Online: 02 January 2025
Abstract17)      PDF in ScienceDirect      

Cold stress widely impairs the quality and yield of tea plants. The miR164 family and its target NAC transcription factor have been identified as crucial regulators in response to cold stress. However, the role of miR164 and CsNAC in cold tolerance in tea plants was little understood. In our study, the expression level of csn-miR164a was significantly reduced under cold stress, and was significantly negative correlation with that of CsNAC1. 5’ RACE and GUS histochemical assays clearly showed that CsNAC1 was specifically cleaved by csn-miR164a. The csn-miR164a-silenced tea leaves promoted expression level of CsNAC1 and CsCBFs, and exhibited greater cold tolerance, also overexpression of CsNAC1 enhanced cold tolerance in transgenic Arabidopsis plants by promoting the expression levels of AtCBFs. In contrast, the heterologous overexpression of csn-miR164a in Arabidopsis decreased the expression level of AtNACs and AtCBFs, and thus impaired cold tolerance. Additionally, silencing of CsNAC1-impaired the expression levels of CsCBFs resulted in greater cold sensitivity in tea leaves. Taken together, our present study demonstrated that the miR164a-CsNAC1 module may play a negative role in cold tolerance of tea plants via CsCBF-dependent pathway.

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Quantify the effects of nitrogen and potassium interactions on wheat using a new development index
Luchen Zhang, Longqin Wang, Yongchao Tian, Liang Tang, Bing Liu, Yan Zhu, Weixing Cao, Liujun Xiao, Leilei Liu
DOI: 10.1016/j.jia.2025.02.036 Online: 21 February 2025
Abstract8)      PDF in ScienceDirect      

Nitrogen (N) and potassium (K) are key elements for crop growth, yet exhaustive research on the impact of N–K interactions on plant N and K status and yield is lacking.  This study aimed to explore effective indicators for diagnosing N and K nutrition and predicting yield of wheat under N–K interactions based on the theoretical framework of a critical nutrient dilution curve.  A four-year N–K interaction experiment involving three wheat cultivars was employed for building and validating nutrient indices (NIs) based on the critical N dilution curve (CNDC) and the critical K dilution curve (CKDC).  In addition, literature data were collected for supplementary validation.  The results revealed that the changes of parameter A1 in critical K dilution curves (CKDCs) can reflect the impact of nitrogen application on K absorption and utilization.  However, the difference in KNI values calculated by CKDC under different N levels is not significant. Based on the aboveground biomass (AGB), a universal CKDC was established and defined as Kc=3.63AGB–0.37 under N–K interactions.  The results showed that the direct effects of N or K deficiency on crops could be quantified by the N–K interaction index (NKI) calculated by integrating CNDC and CKDC, and the changes in crop growth in response to proportional N and K concentrations could be determined by NKI as well.  In addition, topdressing N fertilizer at the jointing stage significantly improved the N–K interaction effect on N nutrition index (NNI) and NKI at the booting stage (P<0.05), but had no significant N–K interaction effect on K nutrition index (KNI).  All indicators at heading stage demonstrated the best predictive capability for relative yield (RY) than other stages.  Compared with NNI and KNI, the prediction accuracy of yield with NKI improved by 11.63 and 17.44%, respectively.  The NKI has better performance in diagnosing N and K nutrition and predicting yield under N–K interactions than NNI and KNI.  This result enhances the interpretation of the effects of NK interactions on wheat growth and has important applications in improving the accuracy of N and K nutrition diagnosis and yield prediction.

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