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Journal of Integrative Agriculture
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The putative elongator complex protein Elp3 is involved in asexual development and pathogenicity by regulating autophagy in the rice blast fungus
ZHANG Li-mei, CHEN Shu-ting, QI Min, CAO Xue-qi, LIANG Nan, LI Qian, TANG Wei, LU Guo-dong, ZHOU Jie, YU Wen-ying, WANG Zong-hua, ZHENG Hua-kun
2021, 20 (
11
): 2944-2956. DOI:
10.1016/S2095-3119(20)63493-1
Abstract
(
103
)
PDF in ScienceDirect
Autophagy is responsible for maintaining fundamental cellular homeostasis and is, therefore, essential for diverse development processes. This study reported that PoElp3, the putative catalytic subunit of Elongator complex, is involved in the maintenance of autophagy homeostasis to facilitate asexual development and pathogenicity in the rice blast fungus
Pyricularia oryzae
. It was found that the
ΔPoelp3
strains were defective in vegetative growth, conidiation, stress response, and pathogenicity. The mutants exhibited hyper-activated autophagy in the vegetative hyphae under both nutrient-rich and nutrient-deficient conditions. The hyper-activation of autophagy possibly suppressed the production of vegetative hyphae in the
ΔPoelp3
strains. Moreover, the
ΔPoelp3
strains were found to be more sensitive to rapamycin during vegetative- and invasive-hyphal growth but have no effect on Target-of-Rapamycin (TOR) signaling inhibition. Taken together, these results demonstrated that PoElp3 is involved in asexual development and pathogenicity by regulating autophagy in the rice blast fungus.
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Domestication and breeding changed tomato fruit transcriptome
LIU Dan, YANG Liang, ZHANG Jin-zhe, ZHU Guang-tao, Lü Hong-jun, Lü Ya-qing, WANG Yan-ling, CAO Xue, SUN Tian-shu, HUANG San-wen, WU Yao-yao
2020, 19 (
1
): 120-132. DOI:
10.1016/S2095-3119(19)62824-8
Abstract
(
250
)
PDF in ScienceDirect
Tomato (Solanum lycopersicum) stress resistance and fruit total soluble solid (TSS) content have changed dramatically during selective breeding, and transcriptome variation has played a critical role in this rewiring. However, the single tomato reference genome impedes characterization of whole-transcriptome variation during domestication and breeding at the population level. Here, we constructed a pan-transcriptome of orange-stage tomato fruit, and investigated global expression presence/absence variation (ePAV) and differentially expressed genes (DEGs) based on RNA sequencing (RNA-seq) data from 399 tomato accessions. A total of 7 181 genes absent from the reference genome were identified, 6 122 of which were ePAV genes during tomato domestication and breeding including resistance genes such as late blight resistance gene
PIM_DN29746_c0_g3_i1
and peroxidase P7-like gene
PIM_DN30274_c0_g2_i1
. In addition, 3 629 genes were significantly differentially expressed during tomato selection, among which 19 genes were associated with the reduced fruit TSS content of modern tomato cultivars, including
LIN5
,
TIV1
, and seven novel sugar transporter genes. Our results indicate that natural and artificial selection greatly shaped the tomato transcriptome, thereby altering the fruit TSS content and resistance to abiotic and biotic stresses.
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Regionalization of wheat powdery mildew oversummering in China based on digital elevation
ZOU Ya-fei, QIAO Hong-bo, CAO Xue-ren, Liu Wei, FAN Jie-ru, SONG Yu-li, WANG Bao-tong, ZHOU Yi-lin
2018, 17 (
04
): 901-910. DOI:
10.1016/S2095-3119(17)61851-3
Abstract
(
590
)
PDF in ScienceDirect
Blumeria graminis
f. sp.
tritici
, the pathogen that causes wheat powdery mildew, is one of the most important diseases affecting wheat production in China, and the oversummering is the key stage of wheat powdery mildew epidemic. The more oversummering regionalization of wheat powdery mildew has played an important role in disease prediction, prevention and control. In this study, we analyzed the correlation between oversummering data of wheat powdery mildew and the meteorological factors over the past years, and determined that temperature was the key meteorological factor influencing oversummering of wheat powdery mildew. The average temperature at which wheat powdery mildew growth was terminated (26.2°C) was used as the threshold temperature to regionalize the oversummering range of wheat powdery mildew. This regionalization was done using the GIS ordinary kriging method combined with the Digital Elevation model (DEM) of China. The results showed that annual probability of oversummering region based on Model 26.2 were consistent with the actual survey of the more summer wheat powdery mildew. Wheat powdery mildew oversummering regions in China mainly cover mountainous or high-altitude areas, and these regions form a narrow north-south oversummering zone. Oversummering regions of wheat powdery mildew is mainly concentrated in the high-altitude wheat growing areas, including northern and southern Yunnan, northwestern Guizhou, northern and southern Sichuan, northern and southern Chongqing, eastern and southern Gansu, southeastern Ningxia, northern and southern Shaanxi, central Shanxi, western Hubei, western Henan, northern and western Hebei, western Liaoning, eastern Tibet, eastern Qinghai, western Xinjiang and other regions of China.
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Effects of Powdery Mildew on 1000-Kernel Weight, Crude Protein Content and Yield of Winter Wheat in Three Consecutive Growing Seasons
CAO Xue-ren, YAO Dong-ming, DUAN Xia-yu, LIU Wei, FAN Jie-ru, DING Ke-jian, ZHOU Yi-lin
2014, 13 (
7
): 1530-1537. DOI:
10.1016/S2095-3119(14)60806-6
Abstract
(
1698
)
PDF in ScienceDirect
In order to clarify the impact posed by wheat powdery mildew (Blumeria graminis f. sp. tritici) on the yield and yield components in different epidemic seasons, field trials were conducted in three growing seasons, 2009-2010, 2010-2011 and 2011-2012, in Langfang City, Hebei Province, China. The relationships between 1000-kernel weight, crude protein content of grain and yield and disease index (DI), as well as area under disease progress curve (AUDPC) were studied. The models of the percentage of loss of 1000-kernel weight, crude protein content and yield were constructed using DI at critical point (CP) of growth stages (GS) and AUDPC in the three growing seasons, respectively. The CPs for estimating 1 000-kernel weight, crude protein content of grain and yield of wheat caused by powdery mildew were GS 11.1, GS 10.5.3 and GS 10.5.3, respectively. Models based on DI at CP to estimate the percentage of loss of 1 000-kernel weight, crude protein content of grain and yield were better than models based on AUDPC. And models of the percentage of loss of 1 000-kernel weight, crude protein content and yield for 2011-2012 season were significant different from these for 2009-2010 and 2010-2011 seasons. These results indicated that besides powdery mildew, weather conditions also had influence on 1 000-kernel weight, crude protein content of grain and yield loss of wheat when powdery mildew occurred.
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Assessment of Risk of Establishment of Wheat Dwarf Bunt (Tilletia controversa) in China
JIA Wen-ming, ZHOU Yi-lin, DUAN Xia-yu, LUO Yong, DING Sheng-li, CAO Xue-ren , Bruce D LFitt
2013, 12 (
1
): 87-94. DOI:
10.1016/S2095-3119(13)60208-7
Abstract
(
1683
)
PDF in ScienceDirect
Wheat dwarf bunt, caused by Tilletia controversa Kühn (TCK), is an important quarantine wheat disease throughout the world. Based on published research results of the biology and the epidemiology of the disease, the main factors including temperature, humidity, snow cover, and their parameters relating to teliospore germination, infection and epidemics of TCK were determined. The geophytopathological models for the risk analysis of wheat dwarf bunt establishment were modified. Fifty-year meteorologic data from about 500 weather stations in China were used to calculate the probabilities of TCK establishment in different geographic sites with the models. The map that displays the establishment risk of TCK in winter wheat growing regions in China was generated by using geographical information system (GIS). The zones showing high, moderate, low, and very low, including no risk, of TCK establishment accounted for 27.33, 27.69, 38.12, and 6.86% of total winter wheat growing areas in China, respectively. These results will provide useful information to formulate quarantine regulations and wheat importation policy in China.
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