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1. 甜菊SrUGT76G1上游负调控因子SrMYB1的克隆与功能研究
ZHANG Ting, ZHANG Yong-xia, SUN Yu-ming, XU Xiao-yang, WANG Yin-jie, CHONG Xin-ran, YANG Yong-heng and YUAN Hai-yan
Journal of Integrative Agriculture    2023, 22 (4): 1058-1067.   DOI: 10.1016/j.jia.2023.03.001
摘要212)      PDF    收藏

SrUGT76G1对于合成优质甜菊糖苷至关重要,也是目前甜菊中研究最为深入的糖基转移酶基因,但是关于它的转录调控机制目前还不甚了解。本研究通过酵母单杂交手段鉴定得到了一个SrUGT76G1的上游调控因子SrMYB1SrMYB1属于典型的R2R3类型的MYB类转录因子,其定位在细胞核并且具有转录激活活性。SrMYB1在花中的表达量较高而在叶片中较低。酵母单杂(Y1H)和凝胶阻滞(EMSA)实验证实SrMYB1可以结合在SrUGT76G1启动子的+50-141区域即F4-3区段。进一步研究发现在烟草表皮细胞和甜菊愈伤组织中SrMYB1均可显著抑制SrUGT76G1的表达。综上所述,本研究不但发现了一个SrUGT76G1的潜在上游调控因子并且丰富了甜菊中糖苷代谢途径的调控网络。

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2. 玉米B-box锌指蛋白家族基因的鉴定、进化、表达及蛋白互作分析
XU Xiao-hui, LI Wen-lan, YANG Shu-ke, ZHU Xiang-zhen, SUN Hong-wei, LI Fan, LU Xing-bo, CUI Jin-jie
Journal of Integrative Agriculture    2023, 22 (2): 371-388.   DOI: 10.1016/j.jia.2022.08.091
摘要526)      PDF    收藏

B-box(BBX)基因家族编码的蛋白是由包含锌指结构的转录因子组成,其N端有一个或两个高度保守的B-box基序。BBX蛋白在植物生长发育的各个方面起着至关重要的作用,包括幼苗的光形态发生、避荫、开花时间以及生物和非生物胁迫响应。目前,各国的研究者已经从几种植物中鉴定了BBX的家族成员,然而玉米中的BBX家族成员还知之甚少。通过对玉米BBX家族基因的全基因组鉴定、表达和互作的综合分析,可为了解其功能提供有用信息。本研究共鉴定出36个玉米BBX家族成员,进化分析显示其分布于三个主要分支。在每个主分支中ZmBBXs都具有相似的结构域、基序和基因组结构。基因重复分析表明,玉米BBX蛋白家族的扩张主要是通过片段重复来完成的。利用实时荧光定量PCR技术,本研究分析了ZmBBXs在不同器官组织和不同非生物胁迫条件下的表达。利用生物信息学工具,本研究建立了ZmBBXs蛋白的相互作用网络,并通过双分子荧光互补(BiFC)试验进行了验证。本研究的发现有助于理解ZmBBX家族的复杂性,并为揭示ZmBBX蛋白的生物学功能提供新的线索。

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3. 高质量毛花猕猴桃基因组为抗坏血酸调控机制研究提供新见解
LIAO Guang-lian, HUANG Chun-hui, JIA Dong-feng, ZHONG Min, TAO Jun-jie, QU Xue-yan, XU Xiao-biao
Journal of Integrative Agriculture    2023, 22 (11): 3244-3255.   DOI: 10.1016/j.jia.2023.07.018
摘要284)      PDF    收藏

毛花猕猴桃是猕猴桃属中果实抗坏血酸(AsA)含量高的种之一,但其果实富含抗坏血酸的分子机制尚未被解析。为了深入探明毛花猕猴桃果实富含AsA的分子机制,本研究通过结合基因组学、代谢组学和转录组学构建了AsA代谢相关的调控网络,从而为后续研究奠定基础。在本研究中,我们组装了一个仅含有5个缺口的高质量毛花猕猴桃参考基因组。该基因组由29条染色体组成,大小为615.95 Mb, contig N5020.35 Mb,其中24条染色体直接来自端粒到端粒。基因组组装评价指标LAI值和QV值分别为21.34%39.90%,表明组装的基因组已经达到了金标准参考基因组水平。随后,通过代谢组和转录组分析,分别发现61个代谢物和2,092个基因在果实生长发育过程中存在差异积累/表达。在所有的AsA代谢途径中,AsA降解和循环再生途径在整个果实生长发育过程中显著性高表达,表明该途径AsA调控中起着重要作用。此外,AsA含量与抗坏血酸过氧化物酶基因高度相关。本研究组装的高质量毛花猕猴桃基因组毛花猕猴桃遗传育种研究提供坚实的基础,构建的调控网络将为今后毛花猕猴桃的基因功能研究提供公共数据平台。

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4. Genome-wide identification of WOX gene family in apple and a functional analysis of MdWOX4b during adventitious root formation
XU Xiao-zhao, CHE Qin-qin, CHENG Chen-xia, YUAN Yong-bing, WANG Yong-zhang
Journal of Integrative Agriculture    2022, 21 (5): 1332-1345.   DOI: 10.1016/S2095-3119(21)63768-1
摘要539)      PDF    收藏

WOX基因家族是植物特有的一类转录因子,该家族基因在植物生长发育过程发挥重要的功能。本研究在全基因组水平共鉴定到18个苹果WOX家族基因,通过构建系统发育树将这些基因分为三类,保守结构域和基因结构分析得到的分类结果与系统发育结果一致。同线性分析结果表明全基因组复制和片段重复在苹果WOX家族扩张中发挥重要作用。通过实时荧光定量分析,发现苹果WOX基因呈现组织特异性表达,同时MdWOX4aMdWOX4bMdWOX5bMdWOX11/12aMdWOX11/12b可能在不定根发生过程起到重要的作用。通过转基因烟草不定根发生能力分析,表明过表达MdWOX4b基因显著增强不定根发生能力。以上研究为以后进一步研究MdWOX基因在苹果砧木发育中的功能奠定了基础。


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5. 番茄GDSL酯酶/脂肪酶基因的全基因组鉴定和表达分析
SUN Yao-guang, HE Yu-qing, WANG He-xuan, JIANG Jing-bin, YANG Huan-huan, XU Xiang-yang
Journal of Integrative Agriculture    2022, 21 (2): 389-406.   DOI: 10.1016/S2095-3119(20)63461-X
摘要480)      PDF    收藏

GDSL酯酶/脂肪酶家族包含许多功能基因,它们在植物的生长发育、形态建成、种子油脂合成和防御反应中发挥重要的生物学功能。GDSL酯酶/脂肪酶基因可响应生物和非生物胁迫。虽然GDSL酯酶/脂肪酶家族基因在其他植物中已被鉴定和研究,但它们在番茄中的分类和功能尚不清楚。本研究首次在番茄中鉴定了80GDSL酯酶/脂肪酶家族基因成员,命名为SlGELP1-80我们对这些基因在染色体上的位置进行了定位,并对它们的理化性质、基因结构、系统发育关系、共线关系和顺式作用元件进行了分析。SlGELP基因在番茄中的时空表达特征具有多样性。此外,结合RNA-seq分析表明,番茄接种Stemphylium lycopersici前后SlGELP基因的表达模式不同。用qRT-PCR方法验证番茄接种S. lycopersici病原菌以及分别喷施SAJA处理后5显著差异SlGELP基因的表达。本研究首次利用生物信息学方法鉴定和分析了番茄GDSL酯酶/脂肪酶家族基因,为提高植物抗病性研究提供了新的思路。

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6. Genome-wide identification and expression analysis of Argonaute gene family from longan embryogenic callus
CHEN Rong-zhu, SHEN Xu, ZHANG Shu-ting, ZHAO Hua, CHEN Xiao-hui, XU Xiao-ping, HUO Wen, ZHANG Zi-hao, LIN Yu-ling, LAI Zhong-xiong
Journal of Integrative Agriculture    2021, 20 (8): 2138-2155.   DOI: 10.1016/S2095-3119(20)63313-5
摘要132)      PDF    收藏

Argonaute(AGO)蛋白是RNA诱导基因沉默复合体的核心元件,调控植物从器官发育到非生物胁迫的各个过程。AGO基因家族在许多植物中已被鉴定,但在龙眼中并未见报道。此外,AGO如何在植物胚胎的信号通路中对变化的环境刺激作出反应也尚不清楚。本研究对龙眼的AGO基因家族进行了全基因组鉴定,并分析了其在体细胞胚胎发生(SE)、合子胚胎发生(ZE)、组织发育过程、激素反应、光照和非生物胁迫处理的表达模式。结果表明,基于龙眼基因组数据库有10个龙眼AGO基因被鉴定出来,分为4个分支,分布在1、4、8、10、12、13、14和15号染色体上,内含子数目介于2-23个。表达谱分析表明DlAGOs调控龙眼早中期胚胎、种子、花和茎的发育过程。此外,外源激素、光照和非生物胁迫对DlAGOs的转录水平也表现出不同的表达模式。这些研究结果为进一步阐明龙眼EC中RNAi介导的基因沉默机制提供了有用的信息


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7. Changes in speciation, mobility and bioavailability of Cd, Cr and As during the transformation process of pig manure by black soldier fly larvae (Hermetia illucens)
WANG Xiao-bo, WU Nan, CAI Rui-jie, GENG Wei-na, XU Xiao-yan
Journal of Integrative Agriculture    2021, 20 (5): 1157-1166.   DOI: 10.1016/S2095-3119(20)63333-0
摘要132)      PDF    收藏
黑水虻幼虫(Hermetia illucens)处理畜禽粪便是一种新兴技术,处理产物虫体和虫粪可分别作为动物饲料和有机肥料,然而粪便中残留的重金属会对黑水虻转化过程产生不利影响。本文研究了Cd、Cr、As在黑水虻转化猪粪过程中对黑水虻幼虫生长的影响,以及重金属迁移和形态变化规律。结果表明,As显著降低了黑水虻幼虫的生物量,而Cr和Cd对幼虫的生长无明显影响。黑水虻幼虫对Cd的生物富集系数(BAFs:2.8-3.7)显著高于Cr(0.44-0.62)和As(0.43-0.45)。在黑水虻幼虫转化猪粪过程中,猪粪中的重金属主要迁移到黑水虻的虫粪中,Cd、Cr、As在虫粪中的残留比例分别为52.6-62.0%、90.3-94.2%和93.0-93.3%。转化后,虫粪中Cd含量显著低于猪粪,而Cr和As的含量与猪粪无显著差异(添加150 mg kg-1 Cr处理除外)。与猪粪相比,虫粪中的重金属形态(弱酸溶解态、可还原态、可氧化态和残留态)均有明显变化。其中虫粪中Cr的可还原态含量降低,但可氧化态比例增加。Cd主要以弱酸溶解态和还原态存在于猪粪和虫粪中。虫粪中As的弱酸溶解态和还原态比例降低。猪粪经过黑水虻转化后,Cr的生物有效性降低了17.3-23.1%, Cd和As的生物有效性无明显变化(CK组的As除外)。这些发现有助于我们了解黑水虻幼虫在畜禽粪便生物转化过程中的作用以及对转化产物的安全利用。

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8. Status and path of intergenerational transmission of poverty in rural China: A human capital investment perspective
BAI Yun-li, ZHANG Lin-xiu, SUN Ming-xing, XU Xiang-bo
Journal of Integrative Agriculture    2021, 20 (4): 1080-1091.   DOI: 10.1016/S2095-3119(20)63373-1
摘要194)      PDF    收藏

贫困代际传递是全球减贫的核心问题。本研究使用2008年、2012年、2016年和2019年中国5省25个县100个村2000户的追踪调研数据,采用定性和定量方法,通过估计农村非农工资代际传递,研究了中国农村的贫困代际传递问题,并从进入劳动力市场前儿童人力资本投资的角度阐述了贫困的代际传递机制。研究发现,在中国农村地区非农工资存在显著的代际传递,尤其是在父亲非农工资与子女非农工资、父母平均非农工资与子女非农工资之间。但农村非农工资代际传递的弹性远小于城市,表明农村的社会流动性优于城市。父母非农工资高的孩子在进入劳动力市场前,在有可能在接受高等教育、掌握更多技能方面获得更多投资。通过三个案例分析进一步表明,儿童人力资本投资打破了贫困的代际传递,促进了社会流动。


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9. Potassium deficiency inhibits steviol glycosides synthesis by limiting leaf sugar metabolism in stevia (Stevia rebaudiana Bertoni) plants
SUN Yu-ming, HUANG Xiao-lei, ZHANG Ting, YANG Yong-heng, CHENG Xiao-fang, XU Xiao-yang, YUAN Hai-yan
Journal of Integrative Agriculture    2021, 20 (11): 2932-2943.   DOI: 10.1016/S2095-3119(20)63472-4
摘要134)      PDF    收藏

甜菊叶片中的甜菊糖苷由于具有高甜度和低热量的特点而凸显价值,这推动了甜叶菊商业化种植的发展。优化施肥管理可以有效提高甜菊糖苷的生产力,但是目前关于钾肥与甜菊糖苷生产之间的关系尚不明确。本研究通过盆栽试验揭示了甜菊缺钾对叶片甜菊糖苷合成的影响并探索了其潜在机制。结果表明,在高钾土壤背景下,与常规施钾相比,不施钾肥对甜菊生物量没有显著影响。然而,不施钾肥显著降低了叶片中甜菊糖苷的含量以及甜菊糖苷合成相关基因的表达水平。在缺钾条件下,叶片中不同糖组分含量显著降低,糖代谢相关酶的活性受到抑制。此外,通过对甜菊幼苗叶片进行蔗糖喷施可以有效减弱缺钾造成的甜菊糖苷抑制作用。研究结果还揭示了甜菊叶片中蔗糖、葡萄糖与甜菊糖苷含量之间的显著正相关关系。综上所述,我们的研究结果表明缺钾会抑制甜菊叶片中甜菊糖苷合成,而这种抑制作用是由叶片糖代谢介导的。我们的发现为进一步提高甜菊糖苷的生产潜力提供了新的见解。


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10.
The effects of calcium combined with chitosan amendment on the bioavailability of exogenous Pb in calcareous soil
CHANG Hui-qing, WANG Qi-zhen, LI Zhao-jun, WU Jie, XU Xiao-feng, SHI Zhao-yong
Journal of Integrative Agriculture    2020, 19 (5): 1375-1386.   DOI: 10.1016/S2095-3119(19)62861-3
摘要129)      PDF    收藏
Lead (Pb) in soil may accumulate in crops and enter the human body.  This study aimed to understand the speciation transformation and accumulation characteristics of exogenous Pb in calcareous soil with or without the application of soil amendments.  Field experiments with continuous maize cultivation have been carried out for two years.  The results showed that the contents of total Pb were slightly lower in 2016 than in 2015 for the same treatments; however, no significant difference between the years was observed.  Soil Pb existed mainly in the residual fraction without exogenous Pb addition, and its proportion was more than 33% of the total soil Pb in the control and Ca treatments.  When Pb was added to calcareous soil, Pb existed largely in the oxidizable and reducible fractions during the two-year experimental period, and those fractions made up over 83% of the total Pb.  The proportion of the water-soluble Pb, regardless of the addition of Pb, was the lowest and was less than 0.0019% in all treatments, but the addition of Ca and chitosan amendments reduced the water-soluble and exchangeable Pb contents.  The Pb content in different parts of maize followed the order root>leaf>stem>grain during the experimental period.  Although maize had low transfer and enrichment factors in calcareous soil, which make the Pb content in the grain show no significant difference among the five treatments in the same year, adding Ca and chitosan to calcareous soil can reduce the Pb contents of maize, especially reduce the Pb contents of root, stem and leaf.  Therefore, the addition of calcium and chitosan is an effective strategy for reducing Pb availability in calcareous soils.
 
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11. Silencing the SLB3 transcription factor gene decreases drought stress tolerance in tomato
WANG Zi-yu, bAO Yu-fang, PEI Tong, WU Tai-ru, DU Xu, HE Meng-xi, WANG Yue, LIU Qi-feng, YANG Huan-huan, JIANG Jing-bin, ZHANG He, LI Jing-fu, ZHAO Ting-ting, XU Xiang-yang
Journal of Integrative Agriculture    2020, 19 (11): 2699-2708.   DOI: 10.1016/S2095-3119(20)63350-0
摘要128)      PDF    收藏
BRI1-EMS-SUPPRESSOR 1 (BES1) transcription factor is closely associated with the brassinosteroid (BR) signaling pathway and plays an important role in plant growth and development.  SLB3 is a member of BES1 transcription factor family and its expression was previously shown to increase significantly in tomato seedlings under drought stress.  In the present study,we used virus-induced gene silencing (VIGS) technology to downregulate SLB3 expression to reveal the function of the SLB3 gene under drought stress further.  The downregulated expression of SLB3 weakened the drought tolerance of the plants appeared earlier wilting and higher accumulation of H2O2 and O2·, decreased superoxide dismutase (SOD) activity, and increased proline (PRO) and malondialdehyde (MDA) contents and peroxidase (POD) activity.  Quantitative real-time PCR (qRT-PCR) analysis of BR-related genes revealed that the expression of SlCPD, SlDWARF and BIN2-related genes was significantly upregulated in SLB3-silenced seedlings under drought stress, but that the expression of TCH4-related genes was downregulated.  These results showed that silencing the SLB3 gene reduced the drought resistance of tomato plants and had an impact on the BR signaling transduction which may be probably responsible for the variation in drought resistance of the tomato plants. 
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12. Downregulation of SL-ZH13 transcription factor gene expression decreases drought tolerance of tomato
ZHAO Ting-ting, WANG Zi-yu, BAO Yu-fang, ZHANG Xiao-chun, YANG Huan-huan, ZHANG Dong-ye, JIANG Jing-bin, ZHANG He, LI Jing-fu, CHEN Qing-shan, XU Xiang-yang
Journal of Integrative Agriculture    2019, 18 (7): 1579-1586.   DOI: 10.1016/S2095-3119(19)62621-3
摘要293)      PDF    收藏
Zinc finger-homeodomain proteins (ZF-HDs) are transcription factors that regulate plant growth, development, and abiotic stress tolerance.  The SL-ZH13 gene was found to be significantly upregulated under drought stress treatment in tomato (Solanum lycopersicum) leaves in our previous study.  In this study, to further understand the role that the SL-ZH13 gene plays in the response of tomato plants to drought stress, the virus-induced gene silencing (VIGS) method was applied to downregulate SL-ZH13 expression in tomato plants, and these plants were treated with drought stress to analyze the changes in drought tolerance.  The SL-ZH13 silencing efficiency was confirmed by quantitative real-time PCR (qRT-PCR) analysis.  In SL-ZH13-silenced plants, the stems wilted faster, leaf shrinkage was more severe than in control plants under the same drought stress treatment conditions, anyd the mean stem bending angle of SL-ZH13-silenced plants was smaller than that of control plants.  Physiological analyses showed that the activity of superoxide dismutase (SOD) and peroxidase (POD) and the content of proline (Pro) in SL-ZH13-silenced plants were lower than those in control plants after 1.5 and 3 h of drought stress treatment.  The malondialdehyde (MDA) content in SL-ZH13-silenced plants was higher than that in control plants after 1.5 and 3 h of drought stress treatment, and H2O2 and O2-· accumulated much more in the leaves of SL-ZH13-silenced plants than in the leaves of control plants.  These results suggested that silencing the SL-ZH13 gene affected the response of tomato plants to drought stress and decreased the drought tolerance of tomato plants. 
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13. A rapid approach for isolating a single fungal spore from rice blast diseased leaves
FEI Li-wang, LU Wen-bo, XU Xiao-zhou, YAN Feng-cheng, ZHANG Li-wei, LIU Jin-tao, BAI Yuan-jun, LI Zhen-yu, ZHAO Wen-sheng, YANG Jun, PENG You-liang
Journal of Integrative Agriculture    2019, 18 (6): 1415-1418.   DOI: 10.1016/S2095-3119(19)62581-5
摘要298)      PDF    收藏
Single spore isolation is a fundamental approach in plant pathology and mycology to isolate and identify plant fungal pathogens from diseased samples.  However, routine single spore isolation procedure is time-consuming and has a high risk of contamination by other microorganisms.  In this study, we developed a rapid approach for isolating a single spore of the fungal pathogen, Pyricularia oryzae, from rice blast diseased leaves in the paddy field with low potential of contamination.  First, rice blast leaves with single lesions were selected in the paddy field, and a single lesion was cut out and pressed and dragged gently across the surface of water agar.  Next, a germinated single spore with a barely visible piece of agar was cut out of water agar with a dissecting needle under a stereomicroscope at approximately 120-fold magnification.  Last, the germinated single spore with water agar was transferred onto oatmeal tomato agar for growth and preservation.  Based on our experience, a skilled technician or student can successfully isolate single spore from over 150 independent diseased samples with nearly no contaminations in a single working day.  This approach is also suitable for isolating single spore from other fungal disease samples that produce abundant aerial conidia.
 
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14. Genomic and transcriptomic insights into cytochrome P450 monooxygenase genes involved in nicosulfuron tolerance in maize (Zea mays L.)
LIU Xiao-min, XU Xian, LI Bing-hua, YAO Xiao-xia, ZHANG Huan-huan, WANG Gui-qi, HAN Yu-jun
Journal of Integrative Agriculture    2018, 17 (08): 1790-1799.   DOI: 10.1016/S2095-3119(18)61921-5
摘要375)      PDF    收藏
Received  8 September, 2017    Accepted  13 March, 2018

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15. Insecticide resistance of the field populations of oriental armyworm, Mythimna separata (Walker) in Shaanxi and Shanxi provinces of China
ZHAO Yu-yu, SU Li, LI Shuai, LI Yi-ping, XU Xiang-li, CHENG Wei-ning, WANG Yi, WU Jun-xiang
Journal of Integrative Agriculture    2018, 17 (07): 1556-1562.   DOI: 10.1016/S2095-3119(17)61787-8
摘要518)      PDF    收藏
Resistance of five field populations of Mythimna separata (Walker) collected from Shaanxi and Shanxi provinces of China to six different insecticides was evaluated by leaf dip method in the laboratory.  The results showed that all populations were relatively sensitive to emamectin benzoate with a resistance ratio (RR) of 0.583–1.583 folds.  All populations showed susceptible or low level resistance to chlorantraniliprole and beta-cypermethrin.  Compared with a relatively susceptible strain of M. separata, the resistance level of the whole populations ranged from susceptible to moderate to chlorpyrifos and lambda-cyhalothrin, moderate to high to phoxim (RR=19.367–70.100) except for population from Sanyuan County (RR=2.567).  Pair-wise correlation analysis among different insecticides indicated that chlorpyrifos has a significantly positive and significant correlation with emamectin benzoate.  Chlorantraniliprole didn’t have significant correlation with emamectin benzoate, chlorpyrifos and phoxim.  Therefore, emamectin benzoate, chlorantraniliprole and beta-cypermethrin are recommended to control oriental armyworm.  Meanwhile, to postpone the occurrence and development of insecticide resistance in Shaanxi and Shanxi provinces, alternative and rotational application of insecticides between chlorantraniliprole and emamectin benzoate or chlorpyrifos is necessary.
 
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16. Effects of constant and stage-specific-alternating temperature on the survival, development and reproduction of the oriental armyworm, Mythimna separata (Walker) (Lepidoptera: Noctuidae)
LI Bo-liao, XU Xiang-li, JI Jia-yue, WU Jun-xiang
Journal of Integrative Agriculture    2018, 17 (07): 1545-1555.   DOI: 10.1016/S2095-3119(17)61841-0
摘要479)      PDF    收藏
Migratory insects make diverse adaptive strategies in response to changes in external environment.  Temperature has an impact on the survival, development, reproduction, and migration initiation of insects.  Previous research has primarily been focused on the effects of constant temperature on populations, but changing temperature has received less attention.  Three constant temperature treatments (20, 25 and 30°C) and three pupal-alternating temperature treatments (20–25, 25–20 and 25–30°C) were set up to study the relationship between temperature and population development by age-stage, two-sex life table analysis in the oriental armyworm, Mythimna separata Walker, a notorious migratory pest in grain crops.  The 25°C treatment was considered optimal with 20 and 30°C as low suitable temperature and high temperatures, respectively.  The survival rate was relatively low before third instar larvae at  20°C (63.0%) and 20–25°C (70.1%), and extreme low after pupal stage at 30°C (20.6%).  Developmental duration of each stage was negatively correlated with temperature.  The adult pre-oviposition period, when most migratory insects initiate migration, was the shortest at 25°C (2.69 d) but was lengthened at both low suitable (7.48 d for 20°C, 6.91 d for 25–20°C and 4.57 d for 20–25°C) and high temperatures (3.74 d for 25–30°C and 5.00 d for 30°C).  Both low suitable and high temperature decreased lifetime fecundity, net reproductive rate and the intrinsic rate of increase, with variability observed across developmental duration and stage during non-optimal temperature.  The results expand knowledge of the relationship between changing temperature and armyworm population development, and adaptive strategies in complex ambient environment.
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17. Identification of the resistance gene to powdery mildew in Chinese wheat landrace Baiyouyantiao
XU Xiao-dan, FENG Jing, FAN Jie-ru, LIU Zhi-yong, LI Qiang, ZHOU Yi-lin, MA Zhan-hong
Journal of Integrative Agriculture    2018, 17 (01): 37-45.   DOI: 10.1016/S2095-3119(16)61610-6
摘要748)      PDF    收藏
Powdery mildew, caused by Blumeria graminis f. sp. tritici (Bgt), is one of the most damaging diseases to wheat in the world.  The cultivation of resistant varieties of wheat is essential for controlling the powdery mildew epidemic.  Wheat landraces are important resources of resistance to many diseases.  Mapping powdery mildew resistance genes from wheat landraces will promote the development of new varieties with disease resistance.  The Chinese wheat landrace Baiyouyantiao possesses characteristic of disease resistance to powdery mildew.  To identify the resistance gene in this landrace, Baiyouyantiao was crossed with the susceptible cultivar Jingshuang 16 and seedlings of parents and F1, BC1, F2, and F2:3 were tested with Bgt isolate E09.  The genetic results showed that the resistance of Baiyouyantiao to E09 was controlled by a single recessive gene, tentatively designated PmBYYT.  An Illumina wheat 90K single-nucleotide polymorphism (SNP) array was applied to screen polymorphisms between F2-resistant and F2-susceptible DNA bulks for identifying the chromosomal location of PmBYYT.  A high percentage of polymorphic SNPs between the resistant and susceptible DNA bulks was found on chromosome 7B, indicating that PmBYYT may be located on this chromosome.  A genetic linkage map of PmBYYT consisting of two simple sequence repeat markers and eight SNP markers was developed.  The two flanking markers were SNP markers W7BL-8 and W7BL-15, with genetic distances of 3 and 2.9 cM, respectively.  The results of this study demonstrated the rapid characterization of a wheat disease resistance gene and SNP marker development using the 90K SNP assay.  The flanking markers of gene PmBYYT will benefit marker-assisted selection (MAS) and map-based cloning in breeding wheat cultivars with powdery mildew resistance.
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18. Genetic background analysis and breed evaluation of Yiling yellow cattle
Xu Ling, Zhang Wen-gang, Li Jun-ya, Zhu De-jiang, Xu Xiao-cheng, Tian Yan-zi, Xiong Xiong, Guo Ai-zhen, Cao Bing-hai, Niu Hong, Zhu Bo, Wang Ze-zhao, Liang Yong-hu, Shen Hong-xue, Chen Yan
Journal of Integrative Agriculture    2017, 16 (10): 2246-2256.   DOI: 10.1016/S2095-3119(17)61679-4
摘要616)      收藏
Traditionally, Chinese indigenous cattle is geographically widespread.  The present study analyzed based on genome-wide variants to evaluate the genetic background among 157 individuals from four representative indigenous cattle breeds of Hubei Province of China: Yiling yellow cattle (YL), Bashan cattle (BS), Wuling cattle (WL), Zaobei cattle (ZB), and 21 individuals of Qinchuan cattle (QC) from the nearby Shanxi Province of China.  Linkage disequilibrium (LD) analysis showed the LD of YL was the lowest (r2=0.32) when the distance between markers was approximately 2 kb.  Principle component analysis (PCA), and neighbor-joining (NJ)-tree revealed a separation of Yiling yellow cattle from other geographic nearby local cattle breeds.  In PCA plot, the YL and QC groups were segregated as expected; moreover, YL individuals clustered  together more obviously.  In the NJ-tree, the YL group formed an independent branch and BS, WL, ZB groups were mixed.  We then used the FST statistic approach to reveal long-term selection sweep of YL and other 4 cattle breeds.  According to the selective sweep, we identified the unique pathways of YL, associated with production traits.  Based on the results, it can be proposed that YL has its unique genetic characteristics of excellence resource, and it is an indispensable cattle breed in China.   
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19. Effects of different feeding methods and space allowance on the growth performance, individual and social behaviors of Holstein calves
DONG Li-feng, XU Xian-cha, ZHANG Nai-feng, TU Yan, DIAO Qi-yu
Journal of Integrative Agriculture    2017, 16 (06): 1375-1382.   DOI: 10.1016/S2095-3119(16)61484-3
摘要666)      PDF    收藏
The importance of nutrient provisions and weaning methods for calves has been well established over the past few years, while as increasing interest has focused on contribution of animal behavior and their overall performance in production regimes.  The present study investigated the effects of feeding methods and space allowance on growth performance, individual and social behaviors in Holstein calves.  Twenty-four Chinese Holstein male and female calves were allocated to either an individual or group of 6 and fed either with a bucket or a teat.  Milk replacer, calf starter, and Chinese wildrye were offered during the experiment.  A fecal index used in the present study was defined as the total fecal scores/total number of calves in each treatment.  The results showed that there was no significant difference among the 4 treatments in terms of feed intake, body weight, average daily gain, and fecal index.  For the feeding behaviors, the ingesting milk time and ingesting milk rate were significantly affected by space allowance, while the feeding methods showed a significant influence on the bunting behavior of the calves.  There was no significant difference among the 4 treatments in terms of licking fixtures, self-grooming, and lying down behaviors, irrespective of the feeding method or space allowance.  However, sucking an empty bucket or the teat was significantly affected by the feeding method.  Several selected group behaviors were examined in the present study, and similar values for sniffing the other calves, social grooming, and cross-sucking behaviors were observed.  Overall, the present study demonstrated that different feeding methods and space allowances had a significant effect on the feeding behavior of calves, while the feed intake, growth performance, health condition, individual and group social behaviors were not significantly influenced.  Furthermore, under intensified production systems, Holstein calves raised in a group may obtain a similar production performance, thus reducing management input and profitability compared with those kept individually.  However, there may be competition during the feeding period.
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20. An improved method for RNA extraction from urediniospores of and wheat leaves infected by an obligate fungal pathogen, Puccinia striiformis f. sp. tritici
MA Li-Jie, QIAO Jia-xing, KONG Xin-yu, WANG Jun-juan, XU Xiang-ming, HU Xiao-ping
Journal of Integrative Agriculture    2016, 15 (06): 1293-1303.   DOI: 10.1016/S2095-3119(15)61250-3
摘要1723)      PDF    收藏
   Stripe rust, caused by Puccinia striiformis f. sp. tritici, is an important wheat disease in China, seriously threatening wheat production. Understanding the winter survival of the fungus is a key for predicting the spring epidemics of the disease, which determines the crop loss. Estimation of P. striiformis f. sp. tritici winter survival requires processing a large number of samples for sensitive detection of the pathogen in wheat leaf tissue using real-time quantitative reverse transcription PCR (qRT-PCR). A bottleneck for the analysis is the acquisition of a good yield of high quality RNA suitable for qRT-PCR to distinguish dead and alive fungal hyphae inside leaves. Although several methods have been described in the literatures and commercial kits are available for RNA extraction, these methods are mostly too complicated, expensive and inefficient. Thus, we modified three previously reported RNA extraction methods with common and low-cost reagents (LiCl, SDS and NaCl) to solve the problems and selected the best to obtain high quality and quantity RNA for use in qRT-PCR. In the three improved methods, the NaCl method was proven to be the best for extracting RNA from urediniospores of and wheat leaves infected by P. striiformis f. sp. tritici, although the modified LiCl and SDS methods also increased yield of RNA compared to the previous methods. The improved NaCl method has the following advantages: 1) Complete transfer of urediniospores of P. striiformis f. sp. tritici from the mortar and pestle can ensure the initial amount of RNA for the qRT-PCR analysis; 2) the use of low-cost NaCl to replace more expensive Trizol can reduce the cost; 3) the yield and quality of RNA can be increased; 4) the improved method is more suitable for a large number and high quantity of samples from fields. Using the improved NaCl method, the amount of RNA was increased three times from urediniospores of P. striiformis f. sp. tritici compared from the extraction kit. Approximately, 10.11 μg total RNA of high quality was obtained from 100 mg of infected leaves, which was 8.8, 6.5, 3.4 and 2.1 folds of the amounts obtained from the previous LiCl, SDS, NaCl and traditional Trizol methods, respectively. The method could be used to study the overwintering rates of P. striiformis f. sp. tritici over a large region of wheat production for predicting epidemic levels by determining pathogen survival levels after winter. The method can also be used in any studies which need a large number of high quality RNA samples.
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21. Identification and Genetic Analysis of a Novel Rice Spotted-Leaf Mutant with Broad-Spectrum Resistance to Xanthomonas oryzae pv. oryzae
SHEN Hai-chao; SHI Yong-feng; FENG Bao-hua; WANG Hui-mei; XU Xia; HUANG Qi-na; L
Journal of Integrative Agriculture    2014, 13 (4): 713-721.   DOI: 10.1016/S1671-2927(00)9386
摘要1683)      PDF    收藏
A spotted-leaf mutant of rice HM143 was isolated from an EMS-induced IR64 mutant bank. Brown lesions randomly distributed on leaf blades were observed about 3 wk after sowing. The symptom lasted for the whole plant growth duration. Histochemical analysis indicated that cell death occurred in and around the site of necrotic lesions accompanied with accumulation of hydrogen hyperoxide. Agronomic traits were largely similar to the wild type IR64 except seed setting rate and 1 000-grain weight which were significantly decreased in the mutant. Disease resistance of the mutant to multiple races of Xanthomonas oryzae pv. oryzae was significantly enhanced. Genetic analysis showed that the mutation was controlled by a single recessive gene, tentatively termed splHM143. In addition, using molecular markers and 1 023 mutant type individuals from an F2 segregating population derived from the cross HM143/R9308, the spotted-leaf gene was finally delimited to an interval of 149 kb between markers XX25 and ID40 on the long arm of chromosome 4. splHM143 is likely a novel rice spotted-leaf gene since no other similar genes have been identified near the chromosomal region.
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22. Effects of Long-Term Organic Amendments on Soil Organic Carbon in a Paddy Field: A Case Study on Red Soil
HUANG Qing-hai, LI Da-ming, LIU Kai-lou, YU Xi-chu, YE Hui-cai, HU Hui-wen, XU Xiao-lin
Journal of Integrative Agriculture    2014, 13 (3): 570-576.   DOI: 10.1016/S2095-3119(13)60714-5
摘要1759)      PDF    收藏
Soil organic carbon (SOC) is one of the main carbon reservoirs in the terrestrial ecosystem. It is important to study SOC dynamics and effects of organic carbon amendments in paddy fields because of their vest expansion in south China. A study was carried out to evaluate the relationship between the SOC content and organic carbon input under various organic amendments at a long-term fertilization experiment that was established on a red soil under a double rice cropping system in 1981. The treatments included non-fertilization (CK), nitrogen-phosphorus-potassium fertilization in early rice only (NPK), green manure (Astragalus sinicus L.) in early rice only (OM1), high rate of green manure in early rice only (OM2), combined green manure in early rice and farmyard manure in late rice (OM3), combined green manure in early rice, farmyard manure in late rice and rice straw mulching in winter (OM4), combined green manure in early rice and rice straw mulching in winter (OM5). Our data showed that the SOC content was the highest under OM3 and OM4, followed by OM1, OM2 and OM5, then NPK fertilization, and the lowest under non-fertilization. However, our analyses in SOC stock indicated a significant difference between OM3 (33.9 t ha-1) and OM4 (31.8 t ha-1), but no difference between NPK fertilization (27 t ha-1) and nonfertilization (28.1 t ha-1). There was a significant linear increase in SOC over time for all treatments, and the slop of linear equation was greater in organic manure treatments (0.276-0.344 g kg-1 yr-1) than in chemical fertilizer (0.216 g kg-1 yr-1) and no fertilizer (0.127 g kg-1 yr-1).
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23. Functional prediction of tomato PLATZ family members and functional verification of SlPLATZ17
XU Min, GAO Zhao, LI Da-long, ZHANG Chen, ZHANG Yu-qi, HE Qian, QI Ying-bin, ZHANG He, JIANG Jing-bin, XU Xiang-yang, ZHAO Ting-ting
Journal of Integrative Agriculture    DOI: doi.org/10.1016/j.jia.2023.08.003
录用日期: 2023-08-03