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1. NlMIP和Gαi/q偶联受体NlA10的结合促进雌性褐飞虱腹部振动的产生
SU Qin, LÜ Jun, LI Wan-xue, CHEN Wei-wen, LUO Min-shi, ZHANG Chuan-chuan, ZHANG Wen-qing
Journal of Integrative Agriculture    2023, 22 (8): 2470-2482.   DOI: 10.1016/j.jia.2023.02.028
摘要183)      PDF    收藏

对于某些性成熟昆虫包括褐飞虱)而言,腹部振动(abdominal vibration,AV)是交配过程的启动信号,对成功交配至关重要。目前,关于调控AV的遗传和分子机制的研究很少。我们以往与AV相关的转录组学研究表明,肌抑制肽(myoinhibitory peptide,NlMIP调控雌性褐飞虱AV的潜在基因,但其对AV的调控机制尚未报道本文证实NlMIP参与调控雌性褐飞虱的AV和交配行为。当NlMIP敲低效率为59.00%时,雌性褐飞虱在1小时内产生AV频率和交配成功率分别下降了38.89%61.11%。此外,6NlMIP成熟肽能够调控雌性褐飞虱AV的产生及其交配行为,其中NlMIP2的作用最强。基于系统发育树分析和NlMIP成熟肽有效激活A家族神经肽G蛋白偶联受体10(A-family neuropeptide GPCR 10NlA10的结果表明NlA10NlMIP的潜在受体。NlA10被敲低后,雌性褐飞虱1小时内产生AV频率和交配成功率分别下降了28.89%43.33%。当NlA10NlMIP2激活时,NlA10偶联到Gαi/q信号通路,从而抑制下游AC/cAMP/PKA激活PLC/Ca2+/PKC信号通路,进而级联激活MEK1/2介导ERK1/2的磷酸化,最终调控雌性褐飞虱的AV。这些结果为通过干扰雌性褐飞虱的AV进行害虫防治提供了依据。

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2. JIA-2021-1796 高粱SnRK1亚基编码基因的鉴定及其组合模式研究
XIAO Qian-lin, HUANG Tian-hui, ZHOU Chang, CHEN Wei-xi, CHA Jian-kui, WEI Xi-mei, XING Fang-yu, QIAN Meng-ya, MA Qian-nan, DUAN Hong, LIU Zhi-zhai
Journal of Integrative Agriculture    2023, 22 (2): 642-649.   DOI: 10.1016/j.jia.2022.08.068
摘要284)      PDF    收藏

蔗糖非发酵相关蛋白激酶1SnRK1)是一类重要的丝氨酸/苏氨酸蛋白激酶,广泛参与了植物的生长发育,并通过代谢及生理过程参与植物对生物与非生物胁迫的应答,同时在植物的碳水化合物分布及糖信号转导中也发挥着重要作用。本研究通过序列比对,从高粱基因组中鉴定到8SnRK1亚基编码基因,其中3个编码α亚基(SnRK1α1 - SnRK1α3)、3个编码β亚基(SnRK1β1 - SnRK1β3),以及编码γ (SnRK1γ)和βγ(SnRK1βγ)亚基的编码基因各1个。这8个高粱SnRK1基因分布于第1-3、第7、第95条染色体,与来自玉米、水稻的SnRK1基因存在共线性,并且这些基因的编码产物在相同亚基上表现出了高度的同源性。基于qRT-PCR的分析结果显示,在8个高粱SnRK1基因中,除SnRK1α3在籽粒中低表达以及SnRK1β2在穗中高表达外,其他基因在其他组织中均表现出相似的表达特性。基于高粱叶片原生质体的亚细胞定位结果表明,α1、α2、α3、γ4个亚基主要定位于细胞器,而在细胞膜和部分细胞器上则可以检测到β1、β2、β3、及βγ4个亚基的定位信号。此外,酵母双杂交分析发现,8个高粱SnRK1亚基存在α1-β2-βγ、α2-β3-γ、α3-β3-γ等3种不同的组合模式。这些研究结果,为后续高粱SnRK1亚基的功能解析等研究奠定了良好基础。

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3.  
DENG Dong, SUN Su-li, DU Chen-zhang, XIANG Chao, LONG Jue-chen, CHEN Wei-dong, ZHU Zhen-dong
Journal of Integrative Agriculture    2021, 20 (11): 2957-2965.   DOI: 10.1016/S2095-3119(21)63629-8
摘要117)      PDF    收藏
 

由核盘菌(Sclerotinia sclerotiorum)引起的豌豆菌核病是我国常见的豌豆病害。然而,我们近期在重庆和四川调查中发现,引起豌豆菌核病的病原菌可有多个核盘菌种。为此,我们对引起重庆和四川豌豆菌核病的病原菌种进行鉴定,以期为病害防控及抗病育种奠定基础。利用常规组织分离方法对采自重庆永川与合川、四川仪陇的病株及菌核进行病原菌分离,对获得的类似核盘菌的真菌分离物用PDA(potato dextrose agar)培养基培养,观察并测量菌落形态、生长速率与菌核大小。利用核糖体基因内转录区(rDNA-ITS)序列和种特异性分子标记进行分离物的分子鉴定。rDNA-ITS序列采用真菌通用引物ITS4/ITS5对分离物基因组DNA进行PCR扩增,种特异性分子标记鉴定分别利用核盘菌、小核盘菌(S. minor)和三叶草核盘菌(S. trifoliorum)特异性引物SMLcc2F/R、SSasprF/R与STCadF/ R对分离物基因组DNA进行PCR扩增,系统发育分析选取10个代表分离物进行ITS序列测序和采用Mega X软件中非加权组平均法(UPGMA)构建系统发育树。致病性测定采用菌丝块接种豌豆植株茎秆方法进行。菌落生长速率和菌核大小差异可将30个分离物区分为“快速生长-中菌核”、“中速生长-小菌核”和“慢速生长-大菌核”3中类型,分别有6个、7个和17个分离物,与已报道的核盘菌属中的核盘菌、小核盘菌和三叶草核盘菌的类似。ITS序列扩增片段将30个分离物分为2个带型,10个代表分离物进一步的系统发育分析表明,2个分离物与小核盘菌(KY550019、MN421822)聚在同一分支,2个分离物与核盘菌(MN216247、MK734068和MF776031)聚在同一分支,6个分离物与三叶草核盘菌(AY187070、AY547267)聚在同一分支。核盘菌种特异性引物扩增结果表明,30个分离物中分别有6、7和17个分离物扩增出小核盘菌、核盘菌和三叶草核盘菌的目标条带。综合形态和分子特征结果,我们确定30个分离物中有6为小核盘菌、7个为核盘菌和17为三叶草核盘菌。致病性测定结果表明,30个分离物对2个豌豆品种均具有致病性,病害症状与田间自然发病症状相似,且从感病植物中分离出病原菌分离物与接种分离物相同。本研究证明重庆市和四川省部分地区的豌豆菌核病有小核盘菌、核盘菌和三叶草核盘菌3种病原菌,其中小核盘菌和三叶草核盘菌引起豌豆菌核病是在我国西南地区首次报道。


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4. Combining simplified DNA extraction technology and recombinase polymerase amplification assay for rapid and equipment-free detection of citrus pathogen Phytophthora parasitica
CHEN Wei-yu, YU Jia, XU Heng, LU Xin-yu, DAI Ting-ting, TIAN Yue-e, SHEN Dan-yu, DOU Dao-long
Journal of Integrative Agriculture    2021, 20 (10): 2696-2705.   DOI: 10.1016/S2095-3119(20)63459-1
摘要125)      PDF    收藏

由寄生疫霉(Phytophthora parasitica)引起的柑橘根腐病是柑橘生产上普遍发生、对柑橘危害较为严重的一种病害。本研究的目的是建立一种简易快速的结合侧流层析技术判定结果的重组酶聚合酶扩增(lateral flow strip-based recombinase polymerase amplification, LF-RPA)方法检测寄生疫霉,为诊断和防治寄生疫霉引起的柑橘根腐病提供技术支撑。以Ypt1基因为检测的靶标序列,通过多序列比对分析,设计寄生疫霉的特异性引物和探针,建立并优化LF-RPA检测方法,并与简易核酸提取技术相结合,对该检测方法的特异性、灵敏度和实际应用效果进行评估。对LF-RPA体系中的温度、引物和探针比例、时间进行了优化,使得LF-RPA在40°C孵育温度下反应20分钟后即可肉眼判断检测结果。特异性试验中,LF-RPA能特异性地检测出不同来源的寄生疫霉,而其它亲缘关系相近的卵菌病原菌均未检测出。灵敏度试验结果显示,LF-RPA的最低检测灵敏度为1 pg。为了使LF-RPA检测方法更适宜基层使用,对四种不同的简易核酸提取技术进行了比较评估,发现基于PEG-NaOH的简易核酸提取技术更适合本研究。将LF-RPA与PEG-NaOH核酸提取技术相结合,不需要特定的仪器设备,只需要能维持40°C的保温杯,即可在30分钟内完成从发病植株的核酸提取到结果判定的整个检测过程。利用该方法,成功地从接种寄生疫霉的柑橘叶片、枝条和果实上检测出寄生疫霉;此外也从田间采集的10份柑橘发病样品中检测出其中3份样品含有寄生疫霉本研究成功建立了一种针对寄生疫霉的LF-RPA快速检测方法,该方法与简易核酸提取技术相结合,非常适宜于基层使用,为柑橘根腐病的快速诊断奠定了技术基础。


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5. Comparative analysis of the ecological fitness and transcriptome between two genotypes of the brown planthopper Nilaparvata lugens
LIU Kai, CHEN Zhan, SU Qin, YUE Lei, CHEN Wei-wen, ZHANG Wen-qing
Journal of Integrative Agriculture    2020, 19 (6): 1501-1511.   DOI: 10.1016/S2095-3119(19)62768-1
摘要119)      PDF    收藏
Insect quantity is an important index for determining the degree of damage to plants.  The brown planthopper (BPH), Nilaparvata lugens (Stål), is one of the most important rice pests in Asia.  Here, we used two genotypes of BPH, a high-fecundity genotype (HFG) and a low-fecundity genotype (LFG), to measure their ecological fitness and to explore possible causes for genotype differentiation by transcriptome sequencing.  Our results showed that there were significant differences in body weight, egg hatching rate and honeydew secretion between the HFG and LFG, particularly, the number of eggs laid per female was more significant.  Transcriptional analysis showed that a total of 1 966 differentially expressed genes (DEGs) were mainly involved in energy metabolism, carbohydrate and lipid synthesis, insect hormone synthesis and fecundity-related pathways.  Moreover, we found that the phosphorylation levels of AMPK, AKT and FoxO and the synthesis of ecdysone were different between the two genotypes of BPH.  These findings may partially explain the difference in the ecological fitness between HFG and LFG.  This study is the first to compare the differences between two genotypes of BPH and to provide transcriptomic evidence to further understand the fecundity of BPH.
 
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6. Two new SINE insertion polymorphisms in pig Vertnin (VRTN) gene revealed by comparative genomic alignment
ZHENG Yao, CHEN Cai, CHEN Wei, WANG Xiao-yan, WANG Wei, GAO Bo, Klaus WIMMERS, MAO Jiu-de, SONG Cheng-yi
Journal of Integrative Agriculture    2020, 19 (10): 2514-2522.   DOI: 10.1016/S2095-3119(20)63255-5
摘要125)      PDF    收藏
Despite one SINE retrotransposon insertion polymorphism (sRTIP) in the vertebrae development-associated (VRTN) gene was identified in pigs, the structural variations (SVs) in VRTN gene and its proximal flank regions were largely unknown.  VRTN genic and flanking sequences from 14 breeds were assembled or downloaded from whole-genome shotgun contings (WGS) database, and aligned to identify the SVs with Clustalx, and retrotransposons in VRTN gene were annotated by RepeatMasker, the splicing patterns of VRTN gene were predicted by Genescan, and large SVs were evaluated by PCR.  A total of 12 small SVs and three large SVs in intron of VRTN, derived from SINE insertion polymorphisms, were identified, and two of them (VRTN-sRTIP2 and VRTN-sRTIP3) were not reported before.  These VRTN-sRTIPs may affect the splicing patterns of VRTN.  They displayed polymorphisms in most detected eight breeds.  VRTN-sRTIP2 and VRTN-sRTIP3 showed Hardy-Weinberg equilibrium distributions in most populations except the Chinese local Erhualian pigs, while VRTN-sRTIP1 showed genetic equilibrium in Erhualian pigs.  Three VRTN-sRTIPs were identified, and displayed polymorphisms in pigs, and two of them were not reported before.  These SVs provide a useful molecular markers for genetic analysis in pigs, and offer new information to facilitate the understanding the SVs of VRTN gene and their putative roles in the variation of vertebral number.
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7.
Isolation and identification of Fusarium oxysporum f. sp. cubense in Fujian Province, China
WU Kai-li, CHEN Wei-zhong, YANG Shuai, WEN Ya, ZHENG Yu-ru, Wilfred Mabeche Anjago, YUN Ying-zi, WANG Zong-hua
Journal of Integrative Agriculture    2019, 18 (8): 1905-1913.   DOI: 10.1016/S2095-3119(18)62149-5
摘要242)      PDF    收藏
Fusarium wilt, caused by Fusarium oxyporum f. sp. cubense (Foc), is the most serious disease affecting banana production.  To clarify the distribution of the Foc races in Fujian Province of China, 79 soil samples were collected from four regions of Zhangzhou City, the primary banana production area in Fujian.  We isolated and identified 12 Foc strains based on internal transcribed spacer (ITS) sequence analysis, PCR amplification by using Foc-specific primers and pathogenicity assays.  Our analysis indicated that 11 isolates belong to Foc race 1, and 1 isolate belongs to the Foc tropical species race 4 (TR4).  Although TR4 has previously been reported to occur in primary banana-producing provinces, such as Hainan, Guangxi, and Guangdong of China, this is the first report of TR4 isolated from the soil in Fujian Province.  Monitoring the presence of Foc, in particular, the TR4 strains in the soil, is the basic strategy to prevent and control Fusarium wilt.
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8. Effect of low-nitrogen stress on photosynthesis and chlorophyll fluorescence characteristics of maize cultivars with different lownitrogen tolerances
WU Ya-wei, LI Qiang, JIN Rong, CHEN Wei, LIU Xiao-lin, KONG Fan-lei, KE Yong-pei, SHI Hai-chun, YUAN Ji-chao
Journal of Integrative Agriculture    2019, 18 (6): 1246-1256.   DOI: 10.1016/S2095-3119(18)62030-1
摘要571)      PDF    收藏
Nitrogen (N) is a critical element for plant growth and productivity that influences photosynthesis and chlorophyll fluorescence. We investigated the effect of low-N stress on leaf photosynthesis and chlorophyll fluorescence characteristics of maize cultivars with difference in tolerance to low N levels. The low-N tolerant cultivar ZH311 and low-N sensitive cultivar XY508 were used as the test materials. A field experiment (with three N levels: N0, 0 kg ha–1; N1, 150 kg ha–1; N2, 300 kg ha–1) in Jiyanyang, Sichuan Province, China, and a hydroponic experiment (with two N levels: CK, 4 mmol L–1; LN, 0.04 mmol L–1) in Chengdu, Sichuan Province, China were conducted. Low-N stress significantly decreased chlorophyll content and rapid light response curves of the maximum fluorescence under light (Fm´), fluorescence instable state (Fs), non-photochemical quenching (qN), the maximum efficiency of PSII photochemistry under dark-adaption (Fv/Fm), potential activity of PSII (Fv/Fo), and actual photochemical efficiency of PSII (ΦPSII) of leaves. Further, it increased the chlorophyll (Chl) a/Chl b values and so on. The light compensation point of ZH311 decreased, while that of XY508 increased. The degree of variation of these indices in low-N tolerant cultivars was lower than that in low-N sensitive cultivars, especially at the seedling stage. Maize could increase Chl a/Chl b, apparent quantum yield and light saturation point to adapt to N stress. Compared to low-N sensitive cultivars, low-N tolerant cultivars maintained a higher net photosynthetic rate and electron transport rate to maintain stronger PSII activity, which further promoted the ability to harvest and transfer light. This might be a photosynthetic mechanism by which low-N tolerant cultivar adapt to low-N stress.
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9. Identification of QTLs associated with cadmium concentration in rice grains
HU Da-wei, SHENG Zhong-hua, LI Qian-long, CHEN Wei, WEI Xiang-jin, XIE Li-hong, JIAO Gui-ai, SHAO Gao-neng, WANG Jian-long, TANG Shao-qing, HU Pei-song
Journal of Integrative Agriculture    2018, 17 (07): 1563-1573.   DOI: 10.1016/S2095-3119(17)61847-1
摘要517)      PDF    收藏
Cadmium (Cd) contamination in rice has been a hot topic of research because of its potential risk to human health.  In this study, a double haploid (DH) population derived from Zhongjiazao 17 (YK17) (an early-season indica cultivar)×D50 (a tropical japonica cultivar) was used to identify quantitative trait loci (QTLs) associated with Cd concentration in brown rice (CCBR) and Cd concentration in milled rice (CCMR).  Continuous and wide variation for CCBR and CCMR were observed among the DH population.  Correlation analysis revealed a positive and highly significant correlation between the two traits.  A total of 18 QTLs for CCBR and 14 QTLs for CCMR were identified in five different pot and field trials.  Two pairs of QTLs for CCBR (qCCBR2-1 and qCCBR2-2, qCCBR9-1 and qCCBR9-2) and one pair of QTLs for CCMR (qCCMR5-1 and qCCMR5-2) were detected in multiple trials.  The alleles increasing CCBR at the qCCBR2-1/qCCBR2-2 and qCCBR9-1/qCCBR9-2 QTLs were contributed by YK17 and D50, respectively, whereas the D50 allele at the qCCMR5-1/qCCMR5-2 QTLs increased CCMR.  Eight pairs of QTLs for CCBR and CCMR, qCCBR2-2 and qCCMR2-2, qCCBR3 and qCCMR3, qCCBR4-2 and qCCMR4-1, qCCBR4-3 and qCCMR4-2, qCCBR4-4 and qCCMR4-3, qCCBR5 and qCCMR5-2, qCCBR7 and qCCMR7, and qCCBR11-1 and qCCMR11-2, co-localized on chromosomes 2, 3, 4, 5, 7, and 11, respectively.  For all of these QTL pairs, except qCCBR5/qCCMR5-2, the additive effects came from YK17.  In addition, four CCMR QTLs showing significant additive×environment interaction and two pairs of CCMR QTLs with bi-allelic epistatic interactions were identified.  The results of this study could facilitate marker-assisted selection of breeding rice varieties with low Cd accumulation in grain.
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10. Effects of plastic mulching film-induced leaf burning on seedling growth in tobacco cultivation: Different findings beyond conservation view
LIN Ying-chao, WEI Ke-su, GAO Wei-chang, CHEN Yi, LIN Ye-chun, CHEN Wei, LI Hong-xun, PAN Wen-jie
Journal of Integrative Agriculture    2018, 17 (06): 1327-1337.   DOI: 10.1016/S2095-3119(17)61871-9
摘要461)      PDF    收藏
Solving high-temperature plastic mulching film-induced leaf burning in the first week during tobacco cultivation would take much time and effort.  In the present study, the growth as well as the leaf sugar and nicotine contents of seedlings with or without leaf burning induced by high-temperature plastic mulching film were tested at two independent sites in 2015 and 2016 to identify the influence of leaf burning on seedling growth.  The results showed that the growth of seedlings with leaf burning was improved with increased leaf area, leaf number and plant height compared to those without leaf burning, combined with an increased seedling survival rate at two sites in two years.  In seedlings with leaf burning, the contents of fructose and glucose increased and peaked at 11:00 and 13:00 in the leaf and root, respectively, with an increased root nicotine content beginning at 13:00, highlighting the signalling role of sugars.  Activities of antioxidant enzymes including peroxidase (POD), superoxide dismutase (SOD) and catalase (CAT) were all increased in seedlings with leaf burning.  More plant biomass was allocated to roots in seedlings with leaf burning with increased root volume compared to control seedlings, which might facilitate the absorption of water and nutrients from the soil.  Our findings demonstrate that high-temperature plastic mulching film-induced leaf burning not inhibited but benefited seedling survival and growth, suggesting that the time and labour-consuming manual plucking of burnt leaves can be avoided during tobacco cultivation.
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11. Sequence and phylogenetic analysis of hemagglutinin genes of H9N2 influenza viruses isolated from chicken in China from 2013 to 2015
SU Xiao-na, XIE Qing-mei, LIAO Chang-tao, YAN Zhuan-qiang, CHEN Wei-guo, BI Ying-zuo, CHEN Feng
Journal of Integrative Agriculture    2016, 15 (11): 2604-2612.   DOI: 10.1016/S2095-3119(16)61406-5
摘要1285)      PDF    收藏
    H9N2 avian influenza virus (AIV) infection is a major problem in poultry industry worldwide. In this study, molecular characterizations and phylogenetic relationships of hemagglutinin (HA) gene sequences of H9N2 AIV of 5 Chinese isolates in 2014 recently available in GenBank, 3 widely used vaccine strains, and 52 novel isolates in China from 2013 to 2015 were analyzed. The homology analysis showed that the nucleotide sequences of HA gene of these recent Chinese H9N2 AIV isolates shared homologies from 94.1 to 99.9%. Phylogenetic analysis showed that all isolates belonged to AIV lineage h9.4.2.5. Fifty-six out of the 57 recent Chinese H9N2 AIV isolates had the motifs PSRSSR↓GLF at the cleavage sites within the HA protein, while one isolate PWH01 harbored LSRSSR↓GLF. Remarkably, all of the recent Chinese H9N2 AIV strains had the Q216L substitution in the receptor binding site, which indicated that they had potential to infect humans. Most of recent Chinese H9N2 AIV isolates lost the potential N-linked glycosylation site at residues 200–202 compared with vaccine strains. This present study demonstrated that AIV lineage h9.4.2.5 was more predominant in China than other lineages as it harbored all the H9N2 AIV isolated between 2013 and 2015. Also we showed the importance of continuous surveillance of emerging H9N2 AIV in China and update of vaccine formulation accordingly in order to prevent and control H9N2 AIV.
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12. Genetic Relationships Among Chinese Maize OPVs Based on SSR Markers
SONG Li-ya, LIU Xue, CHEN Wei-guo, HAO Zhuan-fang, BAI Li , ZHANG De-gui
Journal of Integrative Agriculture    2013, 12 (7): 1130-1137.   DOI: 10.1016/S2095-3119(13)60341-X
摘要1517)      PDF    收藏
Bulk-SSR method was used to analyze the genetic diversity of 44 open-pollinated varieties collected from Henan, Shandong, Shanxi, and Jilin provinces and Guangxi Zhuang Autonomous Region, China using 70 pairs of SSR primers. The purposes of this study were to (1) compare the genetic diversity among 44 Chinese maize open-pollinated varieties; (2) estimate the minimum number of alleles for construction of a stable dendrogram; and (3) trace the genetic relationships among local germplasm from different regions of China. In total, these 70 SSR primers yielded 292 alleles in 176 samples (4×44) analyzed. The number of alleles per locus was 4.17 on average and ranged from 2 to 8. The highest number of alleles per open-pollinated variety (55.25) was detected in Shanxi germplasm, which indicated that open-pollinated varieties from Shanxi possessed the largest genetic diversity among those from the five locations. The correlation coefficients between different genetic similarity matrices suggested that 200 alleles were sufficient for analysis of the genetic diversity of these 44 open-pollinated varieties. The cluster analysis showed that 44 open-pollinated varieties collected from three growing regions in China were accurately classified into three groups that were highly consistent with their geographic origins, and there is no correlation between GS and geographic distance in this study.
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13. Cloning and Functional Analysis of Lycopene ε-Cyclase (IbLCYe) Gene from Sweetpotato, Ipomoea batatas (L.) Lam.
YU Ling, ZHAI Hong, CHEN Wei, HE Shao-zhen , LIU Qing-chang
Journal of Integrative Agriculture    2013, 12 (5): 773-780.   DOI: 10.1016/S2095-3119(13)60299-3
摘要1468)      PDF    收藏
This paper reported firstly successful cloning of lycopene ε-cyclase (IbLCYe) gene from sweetpotato, Ipomoea batatas (L.) Lam. Using rapid amplification of cDNA ends (RACE), IbLCYe gene was cloned from sweetpotato cv. Nongdafu 14 with high carotenoid content. The 1 805 bp cDNA sequence of IbLCYe gene contained a 1 236 bp open reading frame (ORF) encoding a 411 amino acids polypeptide with a molecular weight of 47 kDa and an isoelectric point (pI) of 6.95. IbLCYe protein contained one potential lycopene ε-cyclase domain and one potential FAD (flavinadenine dinucleotide)/NAD(P) (nicotinamide adenine dinucleotide phosphate)-binding domain, indicating that this protein shares the typical characteristics of LCYe proteins. The gDNA of IbLCYe gene was 4 029 bp and deduced to contain 5 introns and 6 exons. Real-time quantitative PCR analysis revealed that the expression level of IbLCYe gene was significantly higher in the storage roots of Nongdafu 14 than those in the leaves and stems. Transgenic tobacco (cv. Wisconsin 38) expressing IbLCYe gene accumulated significantly more β-carotene compared to the untransformed control plants. These results showed that IbLCYe gene has an important function for the accumulation of carotenoids of sweetpotato.
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14. Identification of Differentially Expressed Genes in Sweetpotato Storage Roots Between Kokei No. 14 and Its Mutant Nongdafu 14 Using PCR-Based cDNA Subtraction
CHEN Wei, ZHAI Hong, YANG Yuan-jun, HE Shao-zhen, LIU De-gao , LIU Qing-chang
Journal of Integrative Agriculture    2013, 12 (4): 589-595.   DOI: 10.1016/S2095-3119(13)60276-2
摘要1321)      PDF    收藏
The contents of carotenoids in the storage root of sweetpotato, Ipomoea batatas (L.) Lam. vary dramatically among different cultivars. However, so far little is known about the regulation of carotenoids synthesis in sweetpotato. In our laboratory, we identified a novel sweetpotato mutant, Nongdafu 14, which is a homogenous mutant derived from the wild type Kokei No. 14. The contents of carotenoids in the storage root of Nongdafu 14 were analyzed using high performance liquid chromatography (HPLC), and it was found that the amount of carotenoids, b-carotene, lutein and zeaxantion, three major types of carotenoids in sweetpotato storage roots, increased 2-26 folds in Nongdafu 14 compared to Kokei No. 14. Suppression subtractive hybridization (SSH) was used to identify genes that were differentially expressed in Nongdafu 14, and a differentially expressed cDNA library was constructed using the cDNA of Nongdafu 14 storage roots as tester and that of Kokei No. 14 storage roots as driver. Out of the 1 530 clones sequenced, we identified 292 nonredundant ESTs. GO and KEGG analyses of these differentially expressed ESTs indicated that diverse metabolism pathways were affected and candidate genes involved in regulation of carotenoids synthesis are suggested.
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15. Human Capital of Family and Social Mobility in Rural Areas - Evidence from China
ZHANG Jin-hua, YU Mei-lian, WU Fang-wei , CHEN Wei
Journal of Integrative Agriculture    2013, 12 (10): 1905-1915.   DOI: 10.1016/S2095-3119(13)60599-7
摘要1482)      PDF    收藏
This research focuses on the impact of family’s human capital on social mobility in China’s rural community. Empirical research is conducted based on data from surveying a typical rural community in the past 20 yr. The study indicates that social mobility in rural area is active in the past 20 yr, and the human capital of family, represented by primary labor’s education level, has played an essential role in mobility of low social class. Meanwhile, socio-economic development and the change of supply and demand in labor market dims the signaling role of degree education, but the impact of occupational training is increasingly remarkable. Therefore, the change from sole degree education to multi-leveled education including occupational education and training is a main way for China’s rural families in low class to realize social mobility.
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16. Differentially Expressed Genes of Soybean During Infection by Phytophthorasojae
XU Peng-fei, Allen Xue, CHEN Wei-yuan, LV Hui-ying, FAN Su-jie, WANG Xin, JIANG Liang-yu, ZHANG Shu-zhen
Journal of Integrative Agriculture    2012, 12 (3): 368-377.   DOI: 10.1016/S1671-2927(00)8554
摘要1624)      PDF    收藏
To elucidate the differential gene expression patterns in soybeans during infection by Phytophthora sojae, a cDNA libraryfor suppression subtractive hybridization (SSH) was constructed with cDNAs from soybean cultivar Suinong 10 treatedwith sterile distilled water as the driver and cDNAs from Suinong 10 inoculated with P. sojae as the tester. A total of 2 067recombinant colonies from the SSH library were randomly picked, amplified, and sequenced. After discarding 312 poorquality expressed sequence tags (EST), 1 755 high quality ESTs were assembled and edited to 1 384 tentatively uniquegenes (TUG), in which, 586 showed significant homology to known sequences, and 798 had low homology or no matchwith the known sequences. A cDNA microarray containing 307 singletons from the 586 TUGs and 222 singletons from the798 TUGs was developed to characterize differentially expressed cDNAs in the SSH library, and eight cDNAs wereidentified to be up-regulated after microarray analysis and then confirmed by real-time PCR. They were homologous to theprotein 10, and were also related to some proteins in disease resistance response, such as pathogen-related protein,phenylalanine ammonia-lyase, isoflavone reductase, WRKY transcription factor 31, major allergen Pru ar 1, and pleiotropicdrug resistance protein 12. Most of the up-regulated cDNAs encode enzymes of phytoalexin biosynthesis andpathogenesis-related proteins involved in plant disease resistance. Here, we fist reported the Pru ar 1 in soybeans. Thefindings of this research have contributed to better understanding of soybean resistance to P. sojae at the molecular level.
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17. Effects of Long-Term Fertilization on the Distribution of Carbon, Nitrogen and Phosphorus in Water-Stable Aggregates in Paddy Soil
WANG Wei, CHEN Wei-cai, WANG Kai-rong, XIE Xiao-li, YIN Chun-mei , CHEN An-lei
Journal of Integrative Agriculture    2011, 10 (12): 1932-1940.   DOI: 10.1016/S1671-2927(11)60194-6
摘要1901)      PDF    收藏
We investigated the size distribution of water-stable aggregates and the soil carbon, nitrogen and phosphorus concentration
over aggregate size fractions based on a long-term (1990-2006) fertilization experiment in a reddish paddy soil. The results
showed that the largest water-stable aggregate (WSA) (>5 mm) and the smallest WSA (<0.25 mm) took up the first largest
proportion (38.3%) and the second largest proportion (23.3%), respectively. Application of organic materials increased
the proportion of the large WSA (>2 mm) and decreased the proportion of the small WSA (<1 mm), resulting in an increase
in the mean weight diameter of WSA, whereas application of chemical fertilizer had little effect. Application of organic
materials, especially combined with chemical fertilizers, increased total carbon, nitrogen and phosphorus concentrations
in all sizes of WSA, and total carbon, nitrogen and phosphorus were prone to concentrate in the large WSA. Further more,
application of organic materials improved the supply effectiveness of available phosphorus, whereas had little influence
on the labile carbon in WSA. Application of chemical fertilizers improved concentrations of total and available phosphorus
in all sizes of WSA, whereas had little influence on total carbon and nitrogen contents. Economical fertilization model
maintained the soil fertility when compared with full dose of chemical fertilizers, indicating that using organic materials
could reduce chemical fertilizers by about one third.We investigated the size distribution of water-stable aggregates and the soil carbon, nitrogen and phosphorus concentration over aggregate size fractions based on a long-term (1990-2006) fertilization experiment in a reddish paddy soil. The results showed that the largest water-stable aggregate (WSA) (>5 mm) and the smallest WSA (<0.25 mm) took up the first largest proportion (38.3%) and the second largest proportion (23.3%), respectively. Application of organic materials increased the proportion of the large WSA (>2 mm) and decreased the proportion of the small WSA (<1 mm), resulting in an increase in the mean weight diameter of WSA, whereas application of chemical fertilizer had little effect. Application of organic materials, especially combined with chemical fertilizers, increased total carbon, nitrogen and phosphorus concentrations in all sizes of WSA, and total carbon, nitrogen and phosphorus were prone to concentrate in the large WSA. Further more, application of organic materials improved the supply effectiveness of available phosphorus, whereas had little influence on the labile carbon in WSA. Application of chemical fertilizers improved concentrations of total and available phosphorus in all sizes of WSA, whereas had little influence on total carbon and nitrogen contents. Economical fertilization model maintained the soil fertility when compared with full dose of chemical fertilizers, indicating that using organic materials could reduce chemical fertilizers by about one third.
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18. Optimization of Two-Dimensional Gel Electrophoresis for Kenaf Leaf Proteins
CHEN Tao, QI Jian-min, XU Jian-tang, CHEN Pin-pin, TAO Ai-fen, CHEN Fu-cheng , CHEN Wei
Journal of Integrative Agriculture    2011, 10 (12): 1842-1850.   DOI: 10.1016/S1671-2927(11)60184-3
摘要1711)      PDF    收藏
To establish a suitable and effective protocol of protein extraction for two-dimensional gel electrophoresis (2-DE) analysis in kenaf leaf tissues, three extraction methods (trichloroacetic acid/acetone, urea/thiourea, and phenol extraction methods) were applied to the extraction of kenaf leaf protein. The results were compared in regard to protein extraction efficiency, sodiumdodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE), and 2-DE gels. Furthermore, the 2-DE system was optimized for four aspects: the pH range of IPG (immobilized pH gradient) stripes, sampling methods, sample volumes, and concentration of polyacrylamide gels. The data presented showed that the phenol extraction method is the best method to perform 2-DE analysis of kenaf leaf protein. The protein extracted from phenol extraction method reached the purity of (26.40±0.859)%, showed (25.67±1.53) protein bands in one dimension SDS-PAGE gels, and (1 374±54.44) protein spots on 2-DE gels. The research also indicates that kenaf leaf protein spots were distributed mainly within the pH range of 4-8. More clear background with a better distribution effect and many protein spots could be obtained on 2-DE gels under the conditions of active rehydration loading, 24 cm IPG strips (linear pH gradient of 4-7), 1.4 mg samples, and 12% SDS-PAGE gels.
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19. 24种基因型填充软件组合在猪SNP芯片的应用效果研究
Haonan Zeng, Kaixuan Guo, Zhanming Zhong, Jinyan Teng, Zhiting Xu, Chen Wei, Shaolei Shi, Zhe Zhang, Yahui Gao
Journal of Integrative Agriculture    DOI: 10.1016/j.jia.2024.12.009
录用日期: 2024-12-10