中国农业科学 ›› 2004, Vol. 37 ›› Issue (09): 1396-1339 .

• 研究简报 • 上一篇    下一篇

用等位基因特异性寡核苷酸(ASO)-PCR快速检测抗多菌灵的油菜菌核病菌

李红霞,周明国   

  1. 南京农业大学农业部病虫检测与治理重点开放实验室
  • 收稿日期:2003-01-23 修回日期:1900-01-01 出版日期:2004-09-20 发布日期:2004-09-20
  • 通讯作者: 周明国

Rapid Identification of Carbendazim Resistant Strains of Sclerotinia sclerotiorum Using Allele-Specific Oligonucleotide (ASO)-PCR

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  1. 南京农业大学农业部病虫检测与治理重点开放实验室
  • Received:2003-01-23 Revised:1900-01-01 Online:2004-09-20 Published:2004-09-20

摘要: 通过3对兼并性引物扩增获得与S.sclerotiorum抗药性相关的β-微管蛋白基因,全长1 685 bp,包含4个内元,相应的编码447个氨基酸。该基因与其它6种线状真菌的β-微管蛋白基因相比,氨基酸序列同源性达95.78%~97.66%,但内元数目和大小不同。比较S.sclerotiorum敏感型和抗药性菌株的β-微管蛋白基因,发现该基因第198位氨基酸由谷氨酸突变为丙氨酸,从而导致田间抗药性的产生。为了快速、准确监测田间抗药性频率,根据S.sclerotiorumβ-微管蛋白基因的突变位点设计了2对等位基因特异性寡核苷酸(ASO),直接以菌核的基因组DNA为模板扩增,所需时间约为6 h,抗药性检出率为100%,与传统菌丝直径法的测定结果相比检测准确率为96%,而传统的检测方法至少需要1~2周。

关键词: 油菜菌核病菌, β-微管蛋白, 多菌灵抗药性, 等位基因特异性寡核苷酸(ASO)-PCR

Abstract: Benzimidazole fungicides are important mixture components to control rape sclerotinia rot disease in China. Carbendazim-resistant isolates of Sclerotinia sclerotiorum have been detected in fields since 1996. In this paper, three pairs of degenerate primers were used to amplify theβ-tubulin gene from S.sclerotiorum. The gene from S.sclerotiorum has 1 685 bp, including 4 introns, encoding 447 amino acid. Except for the difference in the number of the introns, the deduced amino acid sequence of the β-tubulin gene from S.sclerotiorum are 95.78% to 97.66% identical to those of other six plant pathogenic filamentous fungi. Resistance was related to a point mutation in codon 198 where the glutamic acid has changed into alanine, which caused the occurrence of resistance field. A DNA fragment surrounding codon 198 was amplified directly from genomic DNA of sclerotinia using two pairs of Allele-Specific Oligonucleotide(ASO) primers to detect resistant frequency accurately. Using this method within 6 h, the detection rate for benzimidazole resistance was up to 100%; in comparison with the conventional assay procedure, which needs 1-2 weeks, the accuracy of the new method was 96%.

Key words: Sclerotinia sclerotiorum, β-tubulin, Carbendazim-resistance, Allele-Specific Oligonucleotide (ASO)-PCR