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Predicting soil depth in a large and complex area using machine learning and environmental correlations
LIU Feng, YANG Fei, ZHAO Yu-guo, ZHANG Gan-lin, LI De-cheng
2022, 21 (8): 2422-2434.   DOI: 10.1016/S2095-3119(21)63692-4
Abstract153)      PDF in ScienceDirect      

Soil depth is critical for eco-hydrological modeling, carbon storage calculation and land evaluation.  However, its spatial variation is poorly understood and rarely mapped.  With a limited number of sparse samples, how to predict soil depth in a large area of complex landscapes is still an issue.  This study constructed an ensemble machine learning model, i.e., quantile regression forest, to quantify the relationship between soil depth and environmental conditions.  The model was then combined with a rich set of environmental covariates to predict spatial variation of soil depth and straightforwardly estimate the associated predictive uncertainty in the 140 000 km2 Heihe River basin of northwestern China.  A total of 275 soil depth observation points and 26 covariates were used.  The results showed a model predictive accuracy with coefficient of determination (R2) of 0.587 and root mean square error (RMSE) of 2.98 cm (square root scale), i.e., almost 60% of soil depth variation explained.  The resulting soil depth map clearly exhibited regional patterns as well as local details.  Relatively deep soils occurred in low lying landscape positions such as valley bottoms and plains while shallow soils occurred in high and steep landscape positions such as hillslopes, ridges and terraces.  The oases had much deeper soils than outside semi-desert areas, the middle of an alluvial plain had deeper soils than its margins, and the middle of a lacustrine plain had shallower soils than its margins.  Large predictive uncertainty mainly occurred in areas with a lack of soil survey points.  Both pedogenic and geomorphic processes contributed to the shaping of soil depth pattern of this basin but the latter was dominant.  This findings may be applicable to other similar basins in cold and arid regions around the world.

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Estimating wheat fractional vegetation cover using a density peak k-means algorithm based on hyperspectral image data
LIU Da-zhong, YANG Fei-fei, LIU Sheng-ping
2021, 20 (11): 2880-2891.   DOI: 10.1016/S2095-3119(20)63556-0
Abstract153)      PDF in ScienceDirect      
Fractional vegetation cover (FVC) is an important parameter to measure crop growth.  In studies of crop growth monitoring, it is very important to extract FVC quickly and accurately.  As the most widely used FVC extraction method, the photographic method has the advantages of simple operation and high extraction accuracy.  However, when soil moisture and acquisition times vary, the extraction results are less accurate.  To accommodate various conditions of FVC extraction, this study proposes a new FVC extraction method that extracts FVC from a normalized difference vegetation index (NDVI) greyscale image of wheat by using a density peak k-means (DPK-means) algorithm.  In this study, Yangfumai 4 (YF4) planted in pots and Yangmai 16 (Y16) planted in the field were used as the research materials.  With a hyperspectral imaging camera mounted on a tripod, ground hyperspectral images of winter wheat under different soil conditions (dry and wet) were collected at 1 m above the potted wheat canopy.  Unmanned aerial vehicle (UAV) hyperspectral images of winter wheat at various stages were collected at 50 m above the field wheat canopy by a UAV equipped with a hyperspectral camera.  The pixel dichotomy method and DPK-means algorithm were used to classify vegetation pixels and non-vegetation pixels in NDVI greyscale images of wheat, and the extraction effects of the two methods were compared and analysed.  The results showed that extraction by pixel dichotomy was influenced by the acquisition conditions and its error distribution was relatively scattered, while the extraction effect of the DPK-means algorithm was less affected by the acquisition conditions and its error distribution was concentrated.  The absolute values of error were 0.042 and 0.044, the root mean square errors (RMSE) were 0.028 and 0.030, and the fitting accuracy R2 of the FVC was 0.87 and 0.93, under dry and wet soil conditions and under various time conditions, respectively.  This study found that the DPK-means algorithm was capable of achieving more accurate results than the pixel dichotomy method in various soil and time conditions and was an accurate and robust method for FVC extraction. 
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Rapid determination of leaf water content for monitoring waterlogging in winter wheat based on hyperspectral parameters
YANG Fei-fei, LIU Tao, WANG Qi-yuan, DU Ming-zhu, YANG Tian-le, LIU Da-zhong, LI Shi-juan, LIU Sheng-ping
2021, 20 (10): 2613-2626.   DOI: 10.1016/S2095-3119(20)63306-8
Abstract225)      PDF in ScienceDirect      
Waterlogging is becoming an obvious constraint on food production due to the frequent occurrence of extremely high-level rainfall events.  Leaf water content (LWC) is an important waterlogging indicator, and hyperspectral remote sensing provides a non-destructive, real-time and reliable method to determine LWC.  Thus, based on a pot experiment, winter wheat was subjected to different gradients of waterlogging stress at the jointing stage.  Leaf hyperspectral data and LWC were collected every 7 days after waterlogging treatment until the winter wheat was mature.  Combined with methods such as vegetation index construction, correlation analysis, regression analysis, BP neural network (BPNN), etc., we found that the effect of waterlogging stress on LWC had the characteristics of hysteresis and all waterlogging stress led to the decrease of LWC.  LWC decreased faster under severe stress than under slight stress, but the effect of long-term slight stress was greater than that of short-term severe stress.  The sensitive spectral bands of LWC were located in the visible (VIS, 400–780 nm) and short-wave infrared (SWIR, 1 400–2 500 nm) regions.  The BPNN Model with the original spectrum at 648 nm, the first derivative spectrum at 500 nm, the red edge position (λr), the new vegetation index RVI (437, 466), NDVI (437, 466) and NDVI´ (747, 1 956) as independent variables was the best model for inverting the LWC of waterlogging in winter wheat (modeling set: R2=0.889, RMSE=0.138; validation set: R2=0.891, RMSE=0.518).  These results have important theoretical significance and practical application value for the precise control of waterlogging stress. 
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