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Improved crop protection and biodiversity of the agroecosystem by reduced tillage in rice paddy fields in southern China
LU Qi-qi, SONG Yuan-feng, PAN Ke-qing, LI Yun, TANG Ming-xin, ZHONG Guo-hua, LIU Jie
2022, 21 (8): 2345-2356.   DOI: 10.1016/S2095-3119(21)63802-9
Abstract222)      PDF in ScienceDirect      

Agricultural sustainability has benefited from the broad adoption of conservation agriculture (CA) practices for decades, in which the reduction of mechanical disturbances to soil (also known as reduced tillage, RT) is one of the most essential principles for CA implementation.  Many studies have recommended the advantages of CA practices in the promotion of biodiversity, but the integrated impacts on crop productivity and biodiversity remain unclear.  Since CA has been applied in rice production in the subtropical area of southern China for several years, the effects of CA, particularly the RT methods, need to be evaluated for the local and long-term adoption.  In this study, we established an integrated network to illustrate how the reduction of tillage intensity influenced organisms including invertebrates (such as rice pests and their predators), pathogens and weeds, and then led to an impact on rice yield.  The two-year study demonstrated that major rice pests, such as rice planthoppers, stem borers and apple snails, were effectively controlled by RT practice.  Similarly, the occurrence of common diseases declined with less tillage.  Compared to the conventional tillage (CT) treatment, the density of weeds in paddy fields deceased significantly in the RT treatment.  In addition, the diversity and richness of pest predators increased remarkably in paddy fields where either reduced or no tillage was applied, which highlighted the significance of a CA strategy for the promotion of biodiversity in the agroecosystem.  More importantly, the rice yield gradually increased after the two-year reduction of tillage.  Taken together, our results suggest that the reduction of tillage intensity is beneficial for the protection of rice crops from various pests, and facilitates the sustainability of the agroecosystem and rice yield, which provides a solid basis and novel insights for the establishment of sustainable agroecosystems by CA-related practices in rice production in southern China.

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circRNA landscape of non-pregnant endometrium during the estrus cycle in dairy goats
LIU Xiao-rui, ZHANG Lei, CUI Jiu-zeng, YANG Li-chun, HAN Jin-cheng, CHE Si-cheng, CAO Bin-yun, LI Guang, SONG Yu-xuan
2021, 20 (5): 1346-1358.   DOI: 10.1016/S2095-3119(20)63464-5
Abstract129)      PDF in ScienceDirect      
Endometrial development is a complicated process involving numerous regulatory factors.  Circular RNAs (circRNAs) have been known as a member of the naturally occurring non-coding RNA family, and are reportedly crucial for a variety of physiological processes.  This study investigated the circRNA landscape of non-pregnant endometrium of dairy goats during estrus.  Non-pregnant endometrial samples of goats at estrus day 5 (Ed5) and estrus day 15 (Ed15) were used to methodically analyze the circRNA landscape using strand-specific Ribo-Zero RNA-Seq.  A total of 2 331 differentially expressed (P<0.05) circRNAs (DEciRs) between Ed5 and Ed15 were discovered in the goat endometrium.  It was found that Nipped-B-like (NIPBL) and calcium responsive transcription factor (CARF) may participate in the development of the endometrium by decreasing (P<0.05) the levels of their circRNA-transcript forms.  Furthermore, Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) analyses of DEciR host genes (hgDEciRs) revealed that tight junctions and GTPases may be involved in endometrial development during the estrus cycle.  A total of 2 331 DEciRs were discovered in the endometrium at Ed5 and Ed15.  Based on GO and KEGG enrichment analyses, it could be inferred that tight junctions and GTPases are likely to play an important role in the development of goat endometrium during the estrus cycle.  This circRNA study greatly enhances our knowledge of global trends in the development of non-pregnant endometrium during the estrus cycle in goats; these results help us to better understand the molecular regulation of endometrial development in dairy goats.
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Identification of a novel emaravirus infecting lilac through next-generation sequencing
WANG Ya-qin, SONG Yu, CAO Meng-ji, CHENG Qi, WU Jian-xiang, HU Tao
2020, 19 (8): 2064-2071.   DOI: 10.1016/S2095-3119(19)62806-6
Abstract144)      PDF in ScienceDirect      
Emaraviruses are multipartite negative-sense single-stranded viruses that usually infect flowering plants.  Using unbiased next-generation sequencing (NGS) approach, a novel virus from lilac leaves with yellow mottle symptom was identified.  Five viral genomic RNA segments were detected and completely sequenced.  The molecular characteristics of the viral RNAs and proteins resemble those of members of the genus Emaravirus.  The virus was found to be mechanically transmissible to Nicotiana benthamiana. Sequence alignment and phylogenetic analyses of the virus support the proposal of creating a new species in the genus Emaravirus for which the name lilac chlorotic ringspot-associated virus (LiCRaV) is proposed. 
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Regionalization of wheat powdery mildew oversummering in China based on digital elevation
ZOU Ya-fei, QIAO Hong-bo, CAO Xue-ren, Liu Wei, FAN Jie-ru, SONG Yu-li, WANG Bao-tong, ZHOU Yi-lin
2018, 17 (04): 901-910.   DOI: 10.1016/S2095-3119(17)61851-3
Abstract590)      PDF in ScienceDirect      
Blumeria graminis f. sp. tritici, the pathogen that causes wheat powdery mildew, is one of the most important diseases affecting wheat production in China, and the oversummering is the key stage of wheat powdery mildew epidemic.  The more oversummering regionalization of wheat powdery mildew has played an important role in disease prediction, prevention and control.  In this study, we analyzed the correlation between oversummering data of wheat powdery mildew and the meteorological factors over the past years, and determined that temperature was the key meteorological factor influencing oversummering of wheat powdery mildew.  The average temperature at which wheat powdery mildew growth was terminated (26.2°C) was used as the threshold temperature to regionalize the oversummering range of wheat powdery mildew.  This regionalization was done using the GIS ordinary kriging method combined with the Digital Elevation model (DEM) of China.  The results showed that annual probability of oversummering region based on Model 26.2 were consistent with the actual survey of the more summer wheat powdery mildew.  Wheat powdery mildew oversummering regions in China mainly cover mountainous or high-altitude areas, and these regions form a narrow north-south oversummering zone.  Oversummering regions of wheat powdery mildew is mainly concentrated in the high-altitude wheat growing areas, including northern and southern Yunnan, northwestern Guizhou, northern and southern Sichuan, northern and southern Chongqing, eastern and southern Gansu, southeastern Ningxia, northern and southern Shaanxi, central Shanxi, western Hubei, western Henan, northern and western Hebei, western Liaoning, eastern Tibet, eastern Qinghai, western Xinjiang and other regions of China.
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Molecular Characterization, Expression Patterns and Binding Properties of Two Pheromone-Binding Proteins from the Oriental Fruit Moth, Grapholita molesta (Busck)
SONG Yue-qin, DONG Jun-feng, QIAO Hui-li , WU Jun-xiang
2014, 13 (12): 2709-2720.   DOI: 10.1016/S2095-3119(13)60686-3
Abstract1459)      PDF in ScienceDirect      
Insect pheromone-binding proteins (PBPs) play important roles in transporting hydrophobic pheromone components across the sensillum lymph to the surface of olfactory receptors (ORs). However, the PBPs of the oriental fruit moth, Grapholita molesta, an important destructive pest of stone fruits worldwide, are not well characterized. In this study, two new putative PBP genes, GmolPBP2 and GmolPBP3, were identified from G. molesta antennae. The deduced amino-acid sequences of these two putative PBP genes are characteristic of the odorant binding protein family, containing six conserved cysteine residues. The genomic DNA sequence of each gene contained two introns. However, the lengths and positions of the introns differed. RT-PCR analyses revealed that the two GmolPBP genes are only expressed in the antennae of female and male moths. Quantitative real-time PCR indicated that the transcription levels of GmolPBP2 are far greater than those of GmolPBP3 in both female and male antennae. GmolPBP3 showed higher transcription levels in female antennae than in male antennae, while GmolPBP2 showed similar transcription levels in both female and male antennae. The transcript levels of both genes were significantly different in premating and post-coitum individuals, implying that mating affects the process of sex pheromone reception. To better understand the functions, two GmolPBPs were expressed in Escherichia coli, and the ligand binding assays were conducted. Results showed that GmolPBP2 has strong binding affinities to two sex pheromone components, E8-12:Ac and Z8-12:Ac, as well as weaker binding affinities to Z8-12:OH and 12:OH. GmolPBP2 also bound some ordinary odor molecules. However, the affinity of GmolPBP3 to both sex pheromones and ordinary odor molecules was very weak. These results show that GmolPBP2 plays the main role in pheromone discrimination and recognition in the oriental fruit moth.
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Transient Expression of Exogenous Gene into Plant Cell Mediated by PEI Nanovector
LI Ying, CUI Hai-xin, SONG Yu, LI Yao, HUANG Jin-li
2011, 10 (6): 820-826.   DOI: 10.1016/S1671-2927(11)60067-9
Abstract3406)      PDF in ScienceDirect      
This study was carried out to investigate the transfection effect of exogenous gene into plant protoplast cell mediated by polyethylenimine (PEI) nanovector, based on PEI gene delivery system in the field of medical science. PEI/DNA complexes were prepared by using PEI polymer to bind the plant expression plasmid, pCMl205-GFPn. The ability of PEI combining and protecting DNA was investigated by agarose gel electrophoresis retardation assay. The surface characteristics of PEI/DNA complexes were observed with transmission electron microscope. The transfection efficiency of Arabidopsis thaliana protoplasts mediated by PEI/DNA complexes at different N/P ratios was analyzed based on observation of transient expression of green fluorescent protein with confocal laser scanning microscope. PEI could bind and condense DNA, and form stable 100-200 nm PEI/DNA complexes when the proportion of PEl and DNA is in the range of 5:1-1:4. Transfection efficiency of PEI/DNA complexes increased with N/P ratios in range of N/P<5 and reached the highest at N/P=5, and began to decrease beyond N/P>5 as higher toxicity to cells. The transfection efficiency of PEI/DNA complexes at N/P=5 was higher than PEG. This study confirmed that PEI nanovector could effectively mediate foreign gene entering into A. thaliana protoplast cell to obtain transient expression, which may be developed as a hopeful and novel transgenic method combined with plant protoplast regeneration.
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Variability of Pesticide Residues in Vegetables from the Marketplaces in Jinan City
SONG Yu-feng, LU Xiao, REN Feng-shan
2011, 10 (10): 1646-1652.   DOI: 10.1016/S1671-2927(11)60163-6
Abstract1714)      PDF in ScienceDirect      
In order to provide technological support for risk estimation of pesticide residues taken from vegetables, the residues of pesticide in vegetables in Jinan City, China, were investigated. Moreover, the variability of pesticide residues in vegetables was explored, and the variability factor was calculated. The level of pesticide residue was studied by statistical method. The variability factor was calculated using the Harrell-Davis method in accordance with principles recommended by the JMPR. In addition, the procedure of evaluation was validated according to the principles laid down by the JMPR (Joint Meeting on Pesticide Residues). The detection rate of pesticide residues in all marketplace samples was less than 20% in Jinan City. The unqualified rate of vegetables was low (0.6%). The chlorothalonil was found as the pesticide with the highest rate of detection. The vegetables with the highest rate of pesticide residues detected were leafy vegetables. The relationship between variability factor and mean value of concentrations of contaminations was expressed by the formula, v=4.9×Cmean. The pesticide residues in vegetables from Jinan City is low. The evaluated variability factor is larger than that the value recommended by the JMPR, however, less than the default value used for acute intake assessment of pesticide residues in UK in most cases.
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