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Genome-wide identification and expression analysis of StPP2C gene family in response to multiple stresses in potato (Solanum tuberosum L.)
WANG Yi-fan, LIAO Yu-qiu, WANG Ya-peng, YANG Jiang-wei, ZHANG Ning, SI Huai-jun
2020, 19 (6): 1609-1624.   DOI: 10.1016/S2095-3119(20)63181-1
Abstract153)      PDF in ScienceDirect      
The plant protein phosphatase 2Cs (PP2Cs) play an essential role in response to stress and abscisic acid (ABA) signaling pathway.  However, to date, no systemic characterization of the PP2Cs has yet been conducted in potato (Solanum tuberosum L.).  In the study, a comprehensive research was performed on genome-wide identification and expression analysis of StPP2C genes in potato.  A total of 78 potato StPP2C genes were identified based on specific structure of PP2C domain, which were distributed across 11 out of 12 potato chromosomes and divided into 12 (A–L) phylogenetic branches.  The result from gene duplication analysis showed that 14 StPP2Cs were involved in gene tandem duplication and 8 genes formed fragment duplication events, which indicated that both tandem and fragment duplication contributed to the expansion of the gene family in evolution.  Exon–intron structural analysis showed that they had a wide range of exon numbers.  Analysis of protein conservative motif demonstrated that StPP2Cs contained more similar motif structures in the same phylogenetic branches.  The cis-elements in StPP2C gene promoter regions were mainly responded to light, phytohormone and abiotic stress.  Most of them exhibited tissue-specific expression patterns, and some members could differentially express under abiotic stress.  The evidence suggested that StPP2C genes may contribute to different functions in several physiological stress and environmental stress conditions.  This study could provide new insights to further investigate StPP2C functional characteristics responding to various stresses in potato.
 
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Effects of RNAi Silencing of SSIII Gene on Phosphorus Content and Characteristics of Starch in Potato Tubers
DU Hong-hui, YANG Tao, MA Cong-yu, FENG Dan, ZHANG Ning, SI Huai-jun, WANG Di
2012, 12 (12): 1985-1992.   DOI: 10.1016/S1671-2927(00)8735
Abstract1247)      PDF in ScienceDirect      
The sense and antisense fragments of the soluble starch synthase (SSIII) gene and the intron fragment of somatic embryogenesis receptor-like kinase (SERK1) gene were cloned from potato using PCR techniques. The RNAi plant expression vectors pBI-SSIII-RNAi and pBIC-SSIII-RNAi were constructed which containing fusion fragment of “sense fragment-intron-antisense fragment” driven by the constitutive expression promoter CaMV 35S and the tuber-specific expression promoter CIPP, respectively. The putative transgenic plants of potato cultivars Kexin-1 and Kexin-4 were obtained using Agrobacterium-mediated transformation method. PCR assay showed that the interference fragment of SSIII gene was integrated into potato genome. The RT-PCR analysis showed that the expression of SSIII gene was repressed apparently on the transcription level. Starch granules of the transgenic potato plants were different in morphology and became cracked in starch granule centre compared with the non-transgenic control plants. The amylose content of starch was increased by 2.68-29.05%, amylopectin to amylose ratio of starch had declined significantly, and the phosphorus content of the starch of the transgenic plants was reduced 9.94-58.36% compared with control plants. The results could provide certain foundation for improvement of potato starch quality.
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