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Journal of Integrative Agriculture
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Genome-wide identification and analysis of the regulation wheat DnaJ family genes following wheat yellow mosaic virus infection
LIU Ting-ting, XU Miao-ze, GAO Shi-qi, ZHANG Yang, HU Yang, JIN Peng, CAI Lin-na, CHENG Ye, CHEN Jian-ping, YANG Jian, ZHONG Kai-li
2022, 21 (
1
): 153-169. DOI:
10.1016/S2095-3119(21)63619-5
Abstract
(
258
)
PDF in ScienceDirect
The co-chaperone DnaJ plays an important role in protein folding and regulation of various physiological activities, and participates in several pathological processes. DnaJ has been extensively studied in many species including humans, drosophila, mushrooms, tomatoes, and
Arabidopsis
. However, few studies have examined the role of DnaJ in wheat (
Triticum aestivum
), and the interaction mechanism between
TaDnaJs
and plant viruses. Here, we identified 236
TaDnaJs
and performed a comprehensive genome-wide analysis of conserved domains, gene structure and protein motifs, chromosomal positions and duplication relationships, and
cis
-acting elements. We grouped these
TaDnaJs
according to their domains, and randomly selected six genes from the groups for tissue-specific analysis, and expression profiles analysis under hormone stress, and 17 genes for plant virus infection stress. In qRT-PCR, we found that among the 17
TaDnaJ
genes tested, 16 genes were up-regulated after wheat yellow mosaic virus (WYMV) infection, indicating that the
TaDnaJ
family is involved in plant defense response. Subsequent yeast two-hybrid assays verified the WYMV NIa, NIb and 7KD proteins interacted with TaDJC (TraesCS7A02G506000), which had the most significant changes in gene expression levels after WYMV infection. Insights into the molecular mechanisms of
TaDnaJ
-mediated stress tolerance and sensitivity could inform different strategies designed to improve crop resistance to abiotic and biotic stress. This study provides a basis for future investigation of the
TaDnaJ
family and plant defense mechanisms.
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G-protein β subunit AGB1 positively regulates salt stress tolerance in Arabidopsis
MA Ya-nan, CHEN Ming, XU Dong-bei, FANG Guang-ning, WANG Er-hui, GAO Shi-qing, XU Zhao-shi, LI Lian-cheng, ZHANG Xiao-hong, MIN Dong-hong, MA You-zhi
2015, 14 (
2
): 314-325. DOI:
10.1016/S2095-3119(14)60777-2
Abstract
(
1947
)
PDF in ScienceDirect
The heterotrimeric GTP-binding proteins (G-proteins) in eukaryotes consisted of α, β and γ subunits and are important in molecular signaling by interacting with G-protein-coupled receptors (GPCR), on which to transduce signaling into the cytoplast through appropriate downstream effectors. However, downstream effectors regulated by the G-proteins in plants are currently not well defined. In this study, the transcripts of AGB1, a G protein β subunit gene in Arabidopsis were found to be down-regulated by cold and heat, but up-regulated by high salt stress treatment. AGB1 mutant (agb1-2) was more sensitive to high salt stress than wild-type (WT). Compared with WT, the cotyledon greening rates, fresh weight, root length, seedling germination rates and survival rates decreased more rapidly in agb1-2 along with increasing concentrations of NaCl in normal (MS) medium. Physiological characteristic analysis showed that compared to WT, the contents of chlorophyll, relative proline accumulation and peroxidase (POD) were reduced, whereas the malonaldehyde (MDA) content and concentration ratio of Na+/K+ were increased in agb1-2 under salt stress condition. Further studies on the expression of several stress inducible genes associated with above physiological processes were investigated, and the results revealed that the expressions of genes related to proline biosynthesis, oxidative stress response, Na+ homeostasis, stress- and ABAresponses were lower in agb1-2 than in WT, suggesting that those genes are possible downstream genes of AGB1 and that their changed expression plays an important role in determining phenotypic and physiologic traits in agb1-2. Taken together, these findings indicate that AGB1 positively regulates salt tolerance in Arabidopsis through its modulation of genes transcription related to proline biosynthesis, oxidative stress, ion homeostasis, stress- and ABA-responses.
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Phylogenetic Analysis and Expression Patterns of the MAPK Gene Family in Wheat (Triticum aestivum L.)
LIAN Wei-wei, TANG Yi-miao, GAO Shi-qing, ZHANG Zhao, ZHAO Xin, ZHAO Chang-ping
2012, 12 (
8
): 1227-1235. DOI:
10.1016/S1671-2927(00)8651
Abstract
(
1291
)
PDF in ScienceDirect
Mitogen activated protein kinases (MAPK) cascades based on protein phosphorylation play an important role in plant growth and development. In this study, we have identified 15 putative members of the wheat MAPK gene (TaMPK) family through an in silico search of wheat expressed sequence tags (EST) databases based on the presence of amino acid sequence of Arabidopsis and rice MAPKs. Phylogenetic analyses of MAPKs from wheat, rice and Arabidopsis genomes have classified them into seven subgroups (A, B, C, D, E, F, and G). Using the available EST information as a source of expression data, the MAPK family genes from Triticum aestivum were detected in diverse tissues. Further expression analysis of the MAPKs in NCBI EST database revealed that their transcripts were most abundant in callus (20%), followed by leaf (12%) and inflorescence (12%). Most MAPK family genes showed some tissue specificity.
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