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1.
Identification of long-grain chromosome segment substitution line Z744 and QTL analysis for agronomic traits in rice
MA Fu-ying, DU Jie, WANG Da-chuan, WANG Hui, ZHAO Bing-bing, HE Guang-hua, YANG Zheng-lin, ZHANG Ting, WU Ren-hong, ZHAO Fang-ming
Journal of Integrative Agriculture 2020, 19 (
5
): 1163-1169. DOI:
10.1016/S2095-3119(19)62751-6
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118
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Length of grain affects the appearance, quality, and yield of rice. A rice long-grain chromosome segment substitution line Z744, with Nipponbare as the recipient parent and Xihui 18 as the donor parent, was identified. Z744 contains a total of six substitution segments distributed on chromosomes (Chrs.) 1, 2, 6, 7, and 12, with an average substitution length of 2.72 Mb. The grain length, ratio of length to width, and 1 000-grain weight of Z744 were significantly higher than those in Nipponbare. The plant height, panicle number, and seed-set ratio in Z744 were significantly lower than those in Nipponbare, but they were still 78.7 cm, 13.5 per plant, and 86.49%, respectively. Furthermore, eight QTLs of different traits were identified in the secondary F
2
population, constructed by Nipponbare and Z744 hybridization. The grain weight of Z744 was controlled by two synergistic QTLs (
qGWT1
and
qGWT7
) and two subtractive QTLs (
qGWT2
and
qGWT6
), respectively. The increase in the grain weight of Z744 was caused mainly by the increase in grain length. Two QTLs were detected,
qGL1
and
qGL7-3
, which accounted for 25.54 and 15.58% of phenotypic variation, respectively. A Chi-square test showed that the long-grain number and the short-grain number were in accordance with the 3:1 separation ratio, which indicates that the long grain is dominant over the short-grain and Z744 was controlled mainly by the principal effect
qGL1
. These results offered a good basis for further fine mapping of
qGL1
and further dissection of other QTLs into single-segment substitution lines.
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2.
Identification and QTL mapping of Z550, a rice backcrossed inbred line with increased grains per panicle
WANG Shi-ming, CUI Guo-qing, WANG Hui, MA Fu-ying, XIA Sai-sai, LI Yun-feng, YANG Zheng-lin, LING Ying-hua, ZHANG Chang-wei, HE Guang-hua, ZHAO Fang-ming
Journal of Integrative Agriculture 2019, 18 (
3
): 526-531. DOI:
10.1016/S2095-3119(18)61996-3
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253
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An elite backcrossed inbred line Z550 with increased grains per panicle was identified from advanced backcrosses between Nipponbare and Xihui 18 by simple sequence repeat (SSR) marker-assisted selection (MAS). Z550 carries 13 substitution segments distributed on chromosomes 1, 6, 7, 8, 9, 10, and 12, with an average substitution length of 1.68 Mb. Compared with the Nipponbare parental line, plant height, panicle length, spikelets per panicle, grains per panicle, and grain weight for Z550 were significantly increased. While the grain width of Z550 was significantly narrower, and the seed setting ratio (81.43%) was significantly lower than that of Nipponbare, it is still sufficient for breeding purposes. Quantitative trait loci (QTLs) mapping for important agronomic traits was conducted with the F
2
population derived from Nipponbare crossed with Z550 using the restricted maximum likelihood (REML) method. A total of 16, including 12 previously unreported QTLs were detected, with contribution rates ranging from 1.46 to 10.49%. Grains per panicle was controlled by 8 QTLs, 5 of which increased number of grains whereas 3 decreased it.
qGPP-1
, with the largest contribution (10.49%), was estimated to increase grains per panicle by 30.67, while
qGPP-9,
with the minimum contribution rate (2.47%), had an effect of increasing grains per panicle by 15.79. These results will be useful for further development of single segment substitution lines with major QTLs, and for research of their molecular functions via QTL cloning.
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3.
Nitrous oxide emissions following seasonal freeze-thaw events from arable soils in Northeast China
CHEN Zhe, YANG Shi-qi, ZHANG Ai-ping, JING Xin, SONG Wei-min, MI Zhao-rong, ZHANG Qingwen, WANG Wen-ying, YANG Zheng-li
Journal of Integrative Agriculture 2018, 17 (
01
): 231-246. DOI:
10.1016/S2095-3119(17)61738-6
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614
)
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Seasonal soil freeze-thaw events may enhance soil nitrogen transformation and thus stimulate nitrous oxide (N
2
O) emissions in cold regions. However, the mechanisms of soil N
2
O emission during the freeze-thaw cycling in the field remain unclear. We evaluated N
2
O emissions and soil biotic and abiotic factors in maize and paddy fields over 20 months in Northeast China, and the structural equation model (SEM) was used to determine which factors affected N
2
O production during non-growing season. Our results verified that the seasonal freeze-thaw cycles mitigated the available soil nitrogen and carbon limitation during spring thawing period, but simultaneously increased the gaseous N
2
O-N losses at the annual time scale under field condition. The N
2
O-N cumulative losses during the non-growing season amounted to 0.71 and 0.55 kg N ha
–1
for the paddy and maize fields, respectively, and contributed to 66 and 18% of the annual total. The highest emission rates (199.2–257.4 μg m
–2
h
–1
) were observed during soil thawing for both fields, but we did not observe an emission peak during soil freezing in early winter. Although the pulses of N
2
O emission in spring were short-lived (18 d), it resulted in approximately 80% of the non-growing season N
2
O-N loss. The N
2
O burst during the spring thawing was triggered by the combined impact of high soil moisture, flush available nitrogen and carbon, and rapid recovery of microbial biomass. SEM analysis indicated that the soil moisture, available substrates including NH
4
+
and dissolved organic carbon (DOC), and microbial biomass nitrogen (MBN) explained 32, 36, 16 and 51% of the N
2
O flux variation, respectively, during the non-growing season. Our results suggested that N
2
O emission during the spring thawing make a vital contribution of the annual nitrogen budget, and the vast seasonally frozen and snow-covered croplands will have high potential to exert a positive feedback on climate change considering the sensitive response of nitrogen biogeochemical cycling to the freeze-thaw disturbance.
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4.
Phenotypic characterization and fine mapping of
mps1
, a premature leaf senescence mutant in rice (
Oryza sativa
L.)
LIU Zhong-xian, CUI Yu, WANG Zhong-wei, XIE Yuan-hua, SANG Xian-chun, YANG Zheng-lin, ZHANG Chang-wei, ZHAO Fang-ming, HE Guang-hua, LING Ying-hua
Journal of Integrative Agriculture 2016, 15 (
9
): 1944-1954. DOI:
10.1016/S2095-3119(15)61279-5
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1857
)
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Leaves play a key role in photosynthesis in rice plants. The premature senescence of such plants directly reduces the accumulation of photosynthetic products and also affects yield and grain quality significantly and negatively. A novel premature senescence mutant,
mps1
(
mid-late stage premature senescence 1
), was identified from a mutant library consisting of ethyl methane sulfonate (EMS) induced descendants of Jinhui 10, an elite indica restorer line of rice. The mutant allele,
mps1
, caused no phenotypic differences from the wild type (WT), Jinhui 10, but drove the leaves to turn yellow when mutant plants grew to the tillering stage, and accelerated leaf senescence from the filling stage to final maturation. We characterized the agronomic traits, content of photosynthetic pigments and photosynthetic efficiency of
mps1
and WT, and fine-mapped
MPS1
. The results showed that the
MPS1
-drove premature phenotype appeared initially on the leaf tips at the late tillering stage and extended to the middle of leaves during the maturing stage. Compared to the WT, significant differences were observed among traits of the number of grains per panicle (–31.7%) and effective number of grains per panicle (–38.5%) of
mps1
individuals. Chlorophyll contents among the first leaf from the top (Top 1st), the second leaf from the top (Top 2nd) and the third leaf from the top (Top 3rd) of mps1 were significantly lower than those of WT (
P
<0.05), and the levels of photosynthetic efficiency from Top 1st to the forth leaf from the top (Top 4th) of
mps1
were significantly lower than those of WT (
P
<0.01). Results from the genetic analysis indicated that the premature senescence of
mps1
is controlled by a recessive nuclear gene, and this locus,
MPS1
is located in a 37.4-kb physical interval between the markers Indel145 and Indel149 on chromosome 6. Genomic annotation suggested eight open reading frames (ORFs) within this physical region. All of these results will provide informative references for the further researches involving functional analyses and molecular mechanism exploring of
MPS1
in rice.
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5.
Using side-dressing technique to reduce nitrogen leaching and improve nitrogen recovery efficiency under an irrigated rice system in the upper reaches of Yellow River Basin, Northwest China
ZHANG Ai-ping, GAO Ji, LIU Ru-liang, ZHANG Qing-wen, CHEN Zhe, YANG Shi-qi, YANG Zheng-li
Journal of Integrative Agriculture 2016, 15 (
1
): 220-231. DOI:
10.1016/S2095-3119(14)60952-7
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1936
)
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The excessive nitrogen (N) fertilizer input coupled with flood irrigation might result in higher N leaching and lower nitrogen recovery efficiency (NRE). Under an intensive rice system in the Ningxia irrigation region, China, environmental friendly N management practices are heavily needed to balance the amount of N input for optimum crop production while minimize the nitrogen loss. The objective of this study was to determine the influences of side-dressing (SD) technique in mechanical transplanting systems on the NRE, N leaching losses and rice yield in anthropogenic-alluvial soil during two rice growing seasons (2010-2011). Four fertilizer N treatments were established, including conventional urea rate (CU, 300 kg ha–1 yr–1); higher SD of controlled-release N fertilizer rate (SD1, 176 kg ha–1 yr–1); lower SD of controlled-release N fertilizer rate (SD2, 125 kg ha–1 yr–1); and control (CK, no N fertilizer). Field lysimeters were used to quantify drainage from undisturbed soil during six rice growing stages. Meanwhile, the temporal variations of total nitrigen (TN), NO3 –-N, and NH4 +-N concentrations in percolation water were examined. The results showed that SD1 substantially improved NRE and reduced N leaching losses while maintaining rice yields. Across two years, the averaged NRE under SD1 treatment increased by 25.5% as relative to CU, but yet the rice yield was similar between two treatments. On average, the nitrogen loss defined as TN, NH4 +-N, and NO3 –-N under the SD1 treatment reduced by 27.4, 37.2 and 24.1%, respectively, when compared with CU during the study periods. Although the SD2 treatment could further reduce N leaching loss to some extent, this technique would sharply decline rice yield, with the magnitude of as high as 21.0% relative to CU treatment. Additionally, the average NRE under SD2 was 11.2% lower than that under SD1 treatment. Overall, the present study concluded that the SD technique is an effective strategy to reduce N leaching and increase NRE, thus potentially mitigate local environmental threat. We propose SD1 as a novel alternative fertilizer technique under an irrigated rice-based system in Ningxia irrigation region when higher yields are under consideration.
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6.
Isolation and identification of Serratia marcescens Ha1 and herbicidal activity of Ha1 ‘pesta’ granular formulation
YANG Juan, WANG Wei, YANG Peng, TAO Bu, YANG Zheng, ZHANG Li-hui, DONG Jin-gao
Journal of Integrative Agriculture 2015, 14 (
7
): 1348-1355. DOI:
10.1016/S2095-3119(14)60967-9
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2038
)
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A total of 479 bacterial strains were isolated from brine (Bohai, Qinhuangdao City, Hebei Province, China). Bioassay results indicated that 4 strains named Ha1, Ha17, Ha38, and Ha384 had herbicidal activity. And strain Ha1 had the highest effective herbicidal activity. As a result, this study aims to identify strain Ha1, characterize its physiological and biological activities, evaluate the herbicidal activity of its metabolites, and develop a ‘pesta’ formulation and assess its effectiveness on Digitaria sanguinalis. Ha1 was identified as Serratia marcescens based on 16S rDNA sequencing. This strain has a flagellum, a diameter of 0.5 to 0.8 μm, and a length of 0.9 to 2.0 μm. The indole test shows positive results, and the catalase enzyme exhibits strong positive reactions. Results further showed that the inhibitory concentration (IC50) of the crude extracts to D. sanguinalis radicula and coleoptile were 3.332 and 2.828 mg mL–1, respectively. Both the suppression of D. sanguinalis and the cell viability of the Ha1 formulation in ‘pesta’ were higher when stored at 4°C than at (25±2)°C. These results indicated that S. marcescens Ha1 can potentially be used as a biocontrol agent against D. sanguinalis.
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