[1] |
彭中镇 . 《全国生猪遗传改良计划》解读及实施中有关问题的讨论(续完).猪业科学, 2011(10):106-108.
|
|
PENG Z Z . Discussion on the relevant issues in the interpretation and implementation of the "National Swine Improvement Program"(Continued). Swine Industry Science , 2011(10):106-108.(in Chinese)
|
[2] |
张勤, 丁向东, 陈瑶生 . 种猪遗传评估技术研发与评估系统应用. 中国畜牧杂志, 2015,51(8):61-65.
|
|
ZHANG Q, DING X D, CHEN Y S . Development and application of swine genetic evaluation system in China. Chinese Journal of Animal Science, 2015,51(8):61-65.(in Chinese)
|
[3] |
张金鑫, 张锁宇, 邱小田, 高虹, 王长存, 王源, 张勤, 王志刚, 杨红杰, 丁向东 . 我国杜洛克、长白和大白猪场间遗传联系分析. 畜牧兽医学报, 2017,48(09):1591-1601.
|
|
ZHANG J X, ZHANG S Y, QIU X T, GAO H, WANG C C, WANG Y, ZHANG Q, WANG Z G, YANG H J, DING X D . The genetic connectedness of Duroc, Landrace and Yorkshire pigs in China. ActaVeterinaria et ZootechnicaSinica, 2017,48(9):1591-1601.(in Chinese)
|
[4] |
张哲, 张勤, 丁向东 . 畜禽基因组选择研究进展. 2011,56(26):2212-2222.
|
|
ZHANG Z, ZHANG Q, DING X D . Advances in genomic selection in domestic animals. Chinese Sci Bull, 2011,56(26):2212-2222.(in Chinese)
|
[5] |
SCHAEFFER L R . Strategy for applying genome-wide selection in dairy cattle. Journal of Animal Breeding and Genetics, 2006,123(4):381-391.
|
[6] |
FORNI S, AGUILAR I, MISZTAL I. Genomic relationships and biases in the evaluation of sow litter size. 2010: Liepzig, Germany. 2-6.
|
[7] |
SONG H L, ZHANG J X, JIANG Y, GAO H, TANG S Q, MI S R, YU F, MENG Q L, XIAO W, ZHANG Q, DING X D . Genomic prediction for growth and reproduction traits in pig using an admixed reference population. Journal of Animal Science, 2017,95(8):3415-3424.
|
[8] |
SAATCHI M, MCCLURE M C, MCKAY S D, ROLF M M, KIM J, DECKER J E, TAXIS T M, CGAPPLE R H, RAMEY H R, NORTHCUTT S L, BAUCK S, WOODWARD B, DEKKERS J C, FERNANDO R L, SCHNABEL R D, GARRICK D J . Accuracies of genomic breeding values in American Angus beef cattle using K-means clustering for cross-validation. Genetics Selection Evolution, 2011,43(1):40-43.
doi: 10.1186/1297-9686-43-40
|
[9] |
LONG N, GIANOLA D, ROSA GJ, WEIGEL K A, AVENDANO S . Machine learning classification procedure for selecting SNPs in genomic selection: Application to Early Mortality in Broilers. Journal of Animal Breeding and Genetics, 2007,124(6):377-389.
doi: 10.1111/j.1439-0388.2007.00694.x
|
[10] |
RIEDELSHEIMER C, CZEDIKEYSENBERG A, GRIEDER C, LISEC J, TECHNOW F, SULPICE R, ALTMANN T, STITT M, WILLMITZER L, MELCHINGER A E . Genomic and metabolic prediction of complex heterotic traits in hybrid maize. Nature Genetics, 2012,44(2):217-220.
doi: 10.1038/ng.1033
|
[11] |
GUO T T, LI H H, YAN J B, TANG J H, LI J S, ZHANG Z W, ZHANG L Y, WANG J K . Performance prediction of F1 hybrids between recombinant inbred lines derived from two elite maize inbred lines. Theoretical and Applied Genetics, 2013,126(1):189-201.
doi: 10.1007/s00122-012-1973-9
|
[12] |
郭亮虎, 逯腊虎, 张婷, 史晓芳, 袁凯, 王镇, 杨三维 . 植物全基因组选择育种研究进展与前景. 山西农业科学, 2015,43(11):1558-1562.
|
|
GUO L H, LU L H, ZHANG T, SHI X F, YUAN K, WANG Z, YANG S W . Research Progress and Prospects of Genome-wide Selection Breeding in Plants. Journal of Shanxi Agricultural Sciences. 2015,43(11):1558-1562.(in Chinese)
|
[13] |
GUTIERREZ A P . Genomic selection for improvement of Atlantic salmon aquaculture: [Doctor of Philosophy]. University ofConcepcionDepartment of Molecular Biology and Biochemistry Faculty of Science, 2015.
|
[14] |
张璐 . 全基因组选择在栉孔扇贝育种中的应用: [D], 青岛:中国海洋大学, 2015.
|
|
ZHANG L . Application of genome selection in breeding of Zhikong Scallop (Chlamysfarreri):[D]. Qingdao: OceanUniversity of China, 2015.(in Chinese)
|
[15] |
MEUWISSEN T HE, HAYES B J, GODDARD M E . Prediction of total genetic value using genome-wide dense marker maps . Genetics, 2001,157(4):1819-1829.
|
[16] |
SAMORE A B, FONTANESI L . Genomic selection in pigs: state of the art and perspectives. Italian Journal of Animal Science, 2016,15(2):211-232.
doi: 10.1080/1828051X.2016.1172034
|
[17] |
周磊, 杨华威, 赵祖凯, 杨红杰, 刘剑锋 . 基因组选择在我国种猪育种中应用的探讨. 中国畜牧杂志, 2018,54(3):4-8.
|
|
ZHOU L, YANG H W, ZHAO Z K, YANG H J, LIU J F . The Application of Genomic Selection in Chinese Pig Breeding Industry. Chinese Journal of Animal Science. 2018,54(3):4-8.(in Chinese)
|
[18] |
CHANG C C, CHOW C C, TELLIER L C, VATTIKUTI S, PURCELL S M, LEE J J . Second-Generation PLINK: Rising to the challenge of larger and richer datasets. GigaScience, 2015,4(1):4-7.
|
[19] |
BROWNING B L, BROWNING S R . A unified approach to genotype imputation and haplotype-phase inference for large data sets of trios and unrelated individuals. American Journal of Human Genetics, 2009,84(2):210-223.
doi: 10.1016/j.ajhg.2009.01.005
|
[20] |
MATHUR P K, SSLLIVAN B P, CHESNAIS J P . Measuring connectedness: concept and application to a large industry breeding program. Ottawa, Canada: Canadian Centre for Swine Improvement, 2002.
|
[21] |
MAYHUR P K, SULLIVAN B, CHESNAIS J . Estimation of the degree of connectedness between herds or management groups in the Canadian swine population. Ottawa, Canada: Canadian Centre for Swine Improvement, 1999.
|
[22] |
张越, 杨宇泽, 张金鑫, 张锁宇, 邱小田, 唐韶青, 丁向东 . DMU、GBS和Herdsman 3个软件育种值估计的比较. 中国畜牧杂志, 2017,53(7):29-35.
|
|
ZHANG Y, YANG Y Z, ZHANG J X, ZHANG S Y, QIU X T, TANG S Q, DING X D . Comparison of Breeding Value Estimation by DMU,GBS and Herdsman. Chinese Journal of Animal Science, 2017,53(7):29-35.(in Chinese)
|
[23] |
白俊艳, 杨又兵, 李广录 . GBS育种分析系统在家畜育种学实验教学中的应用. 畜牧与饲料科学, 2018,39(03):97-100.
|
|
BAI J Y, YANG Y B, LI G L . Application of GBS Breeding Analysis System in the Teaching of Livestock Breeding. Animal Husbandry and Feed Science, 2018,39(03):97-100.(in Chinese)
|
[24] |
CHRISTENSEN O F, LUND M S . Genomic prediction when some animals are not genotyped. Genetics Selection Evolution, 2010,42(1):2.
doi: 10.1186/1297-9686-42-2
|
[25] |
CHRISTENSEN O F, MADSEN P, NIELSEN B, OSTERSEN T, SU G . Single-step methods for genomic evaluation in pigs. Animal, 2012,6(10):1565-1571.
doi: 10.1017/S1751731112000742
|
[26] |
HENDERSON C R . Best linear unbiased estimation and prediction under a selection model. Biometrics, 1975,31(2):423-447.
doi: 10.2307/2529430
|
[27] |
BALOCHE G, LEGARRA A, SALLE G, LARROQUE H, ASTRUC J M, ROBERT-GRANIE C, BARILLET F . Assessment of accuracy of genomic prediction for French Lacaune dairy sheep. Journal of Dairy Science, 2014,97(2):1107-1116.
doi: 10.3168/jds.2013-7135
|
[28] |
ZHONG S Q, DEKKERS J C, FERNANDO R L, JANNINK J L . Factors affecting accuracy from genomic selection in populations derived from multiple inbred lines: a barley case study. Genetics, 2009,182(1):355-364.
doi: 10.1534/genetics.108.098277
|
[29] |
MEUWISSEN T H . Accuracy of breeding values of ‘unrelated’ individuals predicted by dense SNP genotyping. Genetics Selection Evolution, 2009: 35-41.
|
[30] |
CALUS M P, MEUWISSEN T H ,DE ROOS A P W, VEERKAMP R F. Accuracy of genomic selection using different methods to define haplotypes. Genetics, 2008,178(1):553-561.
doi: 10.1534/genetics.107.080838
|
[31] |
LUND M S ,ROOS A P D, VRIES A G D, DRUET T, DUCROCQ V, FRITZ S, GUILLAUME F, GULDRANDSEN B, LIU Z, REENTS R, SCHROOTEN C, SEEFRIED F, SU G S. A common reference population from four europeanholstein populations increases reliability of genomic predictions. Genetics Selection Evolution, 2011,43(1):43-51.
doi: 10.1186/1297-9686-43-43
|
[32] |
BEN J H, PHILLIP J B, AMANDA C C, VERBYLA K, GODDARD M E . Accuracy of genomic breeding values in multi-breed dairy cattle populations. Genetics Selection Evolution, 2009: 41-51.
|
[33] |
WEBER K L, THALLMAN R M, KEELE J W, SNELLING W M, BENNETT G L ,SMITH T P L, MCDANELD T G, ALLAN M F, EENENNAAM A L V, KUEHN L A. Accuracy of genomic breeding values in multibreed beef cattle populations derived from deregressed breeding values and phenotypes. Journal of Animal Science, 2012,90(12):4177-4190.
doi: 10.2527/jas.2011-4586
|
[34] |
GUO X, CHRISTENSEN O F, OSTERSEN T, WANG Y, LUND M S, SU G . Improving genetic evaluation of litter size and piglet mortality for both genotyped and nongenotyped individuals using a single-step method. Journal of Animal Science, 2015,93(2):503-512.
doi: 10.2527/jas.2014-8331
|
[35] |
MIAR Y, PLASTOW G S, BRUCE H L , KEMP B . Genomic selection of pork pH in purebred pigs for crossbred performance. 2014: VancouverBC,Canada.
|
[36] |
OU Z, TEMPELMAN R J, STEIBEL J P, ERNST C W, BATES R O, BELLO N M . Genomic prediction accounting for residual heteroskedasticity. G3-Genes Genomes Genetics, 2015(6):1-13.
|
[37] |
YI N, XU S . Bayesian LASSO for quantitative trait loci mapping. Genetics, 2008,179(2):1045-1055.
doi: 10.1534/genetics.107.085589
|
[38] |
朱波, 王延晖, 牛红, 陈燕, 张路培, 高会江, 高雪, 李俊雅, 孙少华 . 畜禽基因组选择中贝叶斯方法及其参数优化策略. 中国农业科学, 2014,47(22):4495-4505.
|
|
ZHU B, WANG Y H, NIU H, CHEN Y, ZHANG L P, GAO H J, GAO X, LI J Y, SUN S H . The Strategy of Parameter Optimization of Bayesian Methods for Genomic Selection in Livestock. ScientiaAgriculturaSinica, 2014,47(22):4495-4505.(in Chinese)
|
[39] |
VANRADEN P M . Efficient Methods to Compute Genomic Predictions. Journal of Dairy Science, 2008,91(11):4414-4423.
doi: 10.3168/jds.2007-0980
|
[40] |
AGUILAR I, MISZTAL I, JOHNSON D L, LEGARRA A, TSURUTA S, LAWLOR T J . Hot Topic: A unified approach to utilize phenotypic, full pedigree, and genomic information for genetic evaluation of Holstein final score1. Journal of Dairy Science, 2010,93(2):743-752.
doi: 10.3168/jds.2009-2730
|