中国农业科学 ›› 2008, Vol. 41 ›› Issue (6): 1804-1809 .doi: 10.3864/j.issn.0578-1752.2008.06.030

• 畜牧·资源昆虫 • 上一篇    下一篇

西农萨能山羊锌指蛋白基因Ubi-d4的筛选、克隆和生物信息学分析

武会娟,罗 军,张丽娟,杨宝进,韩雪峰,王海滨   

  1. 西北农林科技大学动物科技学院
  • 收稿日期:2007-01-25 修回日期:2007-10-12 出版日期:2008-06-10 发布日期:2008-06-10
  • 通讯作者: 罗 军

Identification and Bioinformatics Analysis of Ubi-d4/Requiem Gene in Mammary Gland of Xinong Saanen Goat

Wu Hui-Juan   

  1. 西北农林科技大学动物科技学院
  • Received:2007-01-25 Revised:2007-10-12 Online:2008-06-10 Published:2008-06-10

摘要: 【目的】克隆西农萨能山羊泌乳中期和后期乳腺组织差异表达基因Ubi-d4并进行生物信息学分析,为进一步研究该基因的功能以及乳腺退化的分子机制提供信息。【方法】以西农萨能羊乳腺组织为材料,利用抑制性消减杂交技术筛选泌乳中期和后期乳腺组织差异表达基因,用RT-PCR克隆Ubi-d4基因,用实时定量PCR分析Ubi-d4基因的表达水平变化,用生物信息学方法对Ubi-d4基因进行结构和功能域预测。【结果】山羊乳腺Ubi-d4基因开放读码框全长1 176 bp,编码391个氨基酸,GenBank登陆号为EF105410;与牛(XM_881516)、人(NM_006268.3)、鼠(NM_011262)、兔(XM_341998)对应基因的核苷酸和氨基酸同源性分别为98%、90%、93%、90%和99%、99%、99%、98%,泌乳后期乳腺组织中mRNA表达水平是泌乳中期的6.10倍;氨基酸序列中含有一个C2H2型锌指结构,一个PHD型锌指结构,没有信号肽和跨摸结构。【结论】筛选到西农萨能山羊乳腺泌乳后期高水平表达基因Ubi-d4,克隆了它的开放读码框(1176bp,GenBank No:EF105410);生物信息学分析推测它是乳腺退化过程中的重要功能基因。

关键词: 萨能山羊, 乳腺组织, Ubi-d4基因, 抑制性消减杂交

Abstract: Ubi-d4, belonging to d4 gene family, it involves in apoptosis response and modulates cell growth and turnover. The object of this study was to identify and verify if Ubi-d4 was involved in mammary gland involution of goat. Mammary gland samples came from Xinong Saanen goat at middle and late lactation periods. Suppression subtractive hybridization (SSH) approach, reverse transcriptase-polymerase chain reaction (RT-PCR), real-time reverse transcriptase-polymerase chain reaction (RT-PCR), and biotechnology were employed to study Ubi-d4. Results: Goat mammary gland zinc-finger protein Ubi-d4 had an open reading frame of 1176 nucleotides encoding a putative protein of 391 amino acid, the GenBank No was EF105410), the homologies of nucleotide and peptide sequence of this Ubi-d4 with bovine (XM_881516), human (NM_006268.3), mouse’s (NM_011262) and rabbit (XM_341998) were 98%, 90%, 93%, 90% and 99%, 99%, 99%,98% respectively; the amino acid sequence of Ubi-d4 included one C2H2 type zinc-finger, one PHD-type zinc-finger, and had no signal peptide, no transmember structure. Conclusion: we successfully identified goat zinc-finger protein Ubi-d4 gene and predicted its function which might give valuable information for further functional studying.

Key words: Xinong saanen goat, Mammary gland, Ubi-d4, Suppression subtractive hybridization