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1. HD-Zip转录因子GhHB12通过调控生长素信号抑制棉花株高
LIU Yan, WANG Wei-ping, ZHANG Lin, ZHU Long-fu, ZHANG Xian-long, HE Xin
Journal of Integrative Agriculture    2023, 22 (7): 2015-2024.   DOI: 10.1016/j.jia.2022.09.022
摘要248)      PDF    收藏

陆地棉是世界上最重要的纤维作物。株高作为植物株型的重要组成部分,影响着作物的种植模式、产量和经济系数。前期研究中,我们分离并鉴定了一个棉花HD-ZIP基因(GhHB12),该基因调控棉花的非生物和生物胁迫应答反应和生长发育过程。在本研究中,我们证明GhHB12基因受生长素诱导表达,过表达GhHB12基因能激活HY5、ATH1和HAT4基因的表达,抑制生长素的时空分布、极性运输和信号传导,并改变细胞壁扩张相关基因的表达,最终抑制棉花株高。这些结果表明,GhHB12可以通过影响生长素的信号传导和细胞壁的扩展来调节棉花株高。

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2. JIA-2021-0958 整合全基因组关联分析和选择信号分析揭示鸡F2群体骨骼肌产肉性状的遗传因子
LI Yu-dong, BAI Xue, LIU Xin , WANG Wei-jia, LI Zi-wei, WANG Ning, XIAO Fan, GAO Hai-he, GUO Huai-shun, LI Hui, WANG Shou-zhi
Journal of Integrative Agriculture    2022, 21 (7): 2065-2075.   DOI: 10.1016/S2095-3119(21)63805-4
摘要318)      PDF    收藏

本研究以东北农业大学鸡F2资源群体(NEAURP)为材料,利用 Illumina HiSeq PE150平台进行全基因组测序(26个F0个体进行10×重测序,519个F2个体进行3×重测序)。使用SAMtools进行SNP calling,BEAGLE 4.0在默认参数设置下进行基因型填充。经过质量控制和基因型填充后,共有7,890,258个SNPs用于分析。根据GRCg6a参考基因组,使用ANNOVAR软件进行SNP注释。基于混合线性模型(MLM),使用GEMMA软件进行全基因组关联分析。使用FST和π两种选择信号方法评估F2群体的遗传分化和遗传多样性。 GWAS与选择信号的整合分析表明,控制鸡骨骼肌产肉性状的遗传因子主要位于第1染色体(168.95Mb-172.43Mb)和第4染色体(74.37Mb-75.23Mb)上,共鉴定出17个可能影响目标性状的位置候选基因( LRCH1、CDADC1、CAB39L、LOC112531568、LOC112531569、FAM124A、FOXO1、NBEA、GPALPP1、RUBCNL、ARL11、KPNA3、LHFP、GBA3、LOC112532426、KCNIP4、SLIT2),其中KPNA3FOXO1是与鸡产肉性状相关的强烈候选基因。本研究的主要创新点是结合GWAS和选择信号分析方法解析鸡骨骼肌产肉性状的遗传结构,发现了一些新的影响鸡产肉性状的基因组区域和候选基因。

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3. JIA-2020-2649在水稻高产水平下通过改变淀粉结构与理化性质进而改善稻米品质的氮肥运筹管理
ZHOU Tian-yang, LI Zhi-kang, LI En-peng, WANG Wei-lu, YUAN Li-min, ZHANG Hao, LIU Li-jun, WANG Zhi-qin, GU Jun-fei, YANG Jian-chang
Journal of Integrative Agriculture    2022, 21 (6): 1576-1592.   DOI: 10.1016/S2095-3119(21)63678-X
摘要268)      PDF    收藏

本研究通过两年大田试验,以两个高产超级稻品种为试验材料,设置了不施用氮肥、高氮肥投入的当地农民习惯栽培方式、优化氮肥管理措施1和优化氮肥管理措施2共计四种氮肥管理方式。试验结果表明通过控制氮肥投入总量、增加种植密度和优化氮肥追施比例等措施,实现高产优质和氮肥利用率的提高。与当地农民习惯相比,优化氮肥管理分别提高了产量和氮肥偏生产力1.70%和13.06%,提高了籽粒淀粉和直链淀粉含量,显著降低了蛋白质含量。在优化氮肥管理下,支链淀粉短支链A链(DP6-12)和B1链(DP13-25)含量显著增加,淀粉结晶度显著下降,同时淀粉的粘度值增加,淀粉的热力学特性变优,从而提高了稻米的蒸煮与食味品质。以上研究结果表明优化氮肥管理可以缓解高产水平条件下因大量氮肥投入而引起的稻米品质变劣,实现高产优质和氮肥利用率的协同提高的目标,对水稻的高产优质生产具有实践和指导意义


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4. The power of informal institutions: The impact of clan culture on the depression of the elderly in rural China
LIU Xiao-hong, WANG Wei-dong, ZHANG Lin-xiu
Journal of Integrative Agriculture    2021, 20 (4): 1107-1118.   DOI: 10.1016/S2095-3119(21)63626-2
摘要139)      PDF    收藏

探索如何提升居民的主观福利是当前学术研究的重要议题之一。本文采用2010年中国家庭追踪调查数据库探究宗族文化对农村老年人精神健康的影响。本文的研究结果发现,宗族文化能够显著地降低农村老年人口的抑郁得分。同时,研究结论也表明,宗族文化对老年人抑郁得分的影响并不存在显著的差异。本研究进一步发现宗族文化对农村老年人抑郁状况的改善作用在经济欠发达的农村地区更为明显。进一步探究宗族文化影响农村老年人抑郁得分的机制发现,宗族文化通过影响老年人的社会支持,进一步起到改善其抑郁状况的作用。本研究有助于丰富非正式制度对农村居民福利的影响的研究。同时,也能够为下一阶段政府制定相对贫困的纾解策略提供一定的决策参考。


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5. Integration of association and computational methods reveals functional variants of LEPR gene for abdominal fat content in chickens
LI Yu-dong, WANG Wei-jia, LI Zi-wei, WANG Ning, XIAO Fan, GAO Hai-he, GUO Huai-shun, LI Hui, WANG Shou-zhi
Journal of Integrative Agriculture    2021, 20 (10): 2734-2748.   DOI: 10.1016/S2095-3119(20)63575-4
摘要149)      PDF    收藏

瘦素受体(LEPR)是瘦素的高亲和力受体,在人类和动物肥胖中起着至关重要的作用。本研究的目的是以东北农业大学肉鸡双向选择品系(NEAUHLF)为研究材料,通过关联分析和电子计算分析相结合的方法,研究LEPR外显子功能变异对鸡脂肪沉积的影响。使用5种在线生物信息学工具预测编码区单核苷酸多态性(SNPs)的功能。进一步,通过基于氨基酸残基的保守性和稳定性分析、蛋白质配体结合位点的预测、蛋白质二级结构分析、蛋白质三级结构的建模等生物信息学分析,确定了高置信度SNPs的可能结构与功能。同时,对鸡LEPR基因外显子20个非同义单核苷酸多态性(nsSNPs)与腹脂性状进行了关联分析。5种在线生物信息学工具显示,rs731962924(N867I)和rs13684622(C1002R)是最可能影响鸡腹部脂肪性状的功能性nsSNPs。氨基酸残基稳定性和保守型分析显示,大部分nsSNPs可引起蛋白质稳定性下降,rs731962924(N867I)和rs13684622(C1002R)在进化过程中相对保守。蛋白质结构分析显示rs731962924(N867I)和rs13684622(C1002R)均在可引起LEPR蛋白质结构和功能的显著变化。关联分析显示rs13684622(C1002R)与鸡腹脂重和腹脂率显著相关(P=0.0413,P=0.0260)。因此,我们认为rs13684622(C1002R)可能是一个影响鸡腹脂沉积的重要功能性SNP,有望应用于分子标记辅助选择(MAS)中培育低脂肉鸡品系。本研究的主要创新点是结合了多种生物信息学方法和nsSNPs与腹脂性状之间的关联分析进行LEPR基因功能性SNPs的筛选,为后续进行深入的功能分析提供优先研究SNP(priorization SNP)。此外,本研究用到的关联分析与计算机电子计算分析相结合的方法为鉴定农业动物重要经济性状的功能性分子标记提供了一条新的途径。


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6. Changes in starch quality of mid-season indica rice varieties in the lower reaches of the Yangtze River in last 80 years
ZHANG Hao, JING Wen-jiang, XU Jing-ju, MA Bing-ju, WANG Wei-lu, ZHANG Wei-yang, GU Jun-fei, LIU Li-jun, WANG Zhi-qin, YANG Jian-chang
Journal of Integrative Agriculture    2020, 19 (12): 2983-2996.   DOI: 10.1016/S2095-3119(20)63431-1
摘要119)      PDF    收藏
Rice (Oryza sativa L.) quality depends mainly on the characteristics of starch stored in kernels.  Understanding the changes in starch characteristics in kernels during variety improvement would have great significance to improve rice quality.  This study was designed to investigate the starch characteristics in the kernels and associated physiological traits of indica rice varieties in the lower reaches of the Yangtze River in China in last 80 years.  Eight representative mid-season indica rice varieties were grown in the field.  The results showed that the grain yield was significantly increased with the improvement of varieties and such an increase was mainly attributed to the increase in total number of spikelets.  The tall varieties applied in the 1940s–1950s had higher protein content, relative crystallinity and infrared (IR) ratio of 1 045/1 022 cm–1.  The semi-dwarf varieties applied in the 1980s–1990s had higher gel consistency, amylopectin content, IR ratio of 1 022/995 cm–1, and breakdown value.  With the improvement of varieties, the amylose content, large-sized starch granule number and volume distribution, onset and peak of gelatinization temperature, gelatinization and retrogradation enthalpy, setback value, pasting temperature, viscosity of peak, hot and final, and 1-aminocycopropane-1-carboxylic acid (ACC) concentrations in panicles and root bleeding were gradually decreased, whereas the medium-sized starch granule number and volume distribution, activities of key enzymes in grains, and zeatin (Z)+zeatin riboside (ZR) contents in panicles and root bleeding at grain filling stage were gradually increased.  Correlation analysis showed that starch thermodynamic characteristics were closely related to starch structure and components, key enzymes and hormones.  The results suggest that starch quality was enhanced through the optimization of starch components, structure, thermodynamics, and the regulation of key enzymes in grains and hormones in panicles and root bleedings at grain filling stage during the improvement of mid-season indica rice.
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7. Giving maize an excited start – Effects of dopamine on maize germination
CHENG Hang-yuan, WANG Xing, FENG Tian-yu, PENG Chuan-xi, WANG Wei, YANG Mu-yu, ZHOU Yu-yi
Journal of Integrative Agriculture    2020, 19 (11): 2690-2698.   DOI: 10.1016/S2095-3119(20)63252-X
摘要127)      PDF    收藏
Dopamine (DA) is a neurotransmitter which takes charge of brain activities about memory and self-stimulation behavior in animals.  Interestingly, our results suggest that DA could also give maize an “excited state”.  The results showed that 1  mmol L–1 DA promoted maize germination by 23.2% significantly, and accelerated the growth rate of roots and shoots by 21.4 and 24.7%, respectively.  As we all known, abscisic acid (ABA) is the key hormone involved in seed dormancy.  In our research, ABA levels in roots and shoots dramatically decreased by 16.45 and 57.57%, respectively.  To further investigate how DA reduces the ABA level in budding seed, we studied ABA synthesis and catabolism pathway.  Specific expression of key ABA-synthesis genes, such as ZmNCED1, ZmNCED3 and ZmZEP were down-regulated by DA.  Simultaneously, the expression levels of ABA8OX1a and ABA8OX1b which are major transcripts of ABA 8´-hydroxylase in ABA catabolism were up-regulated at least 1.5- and 4.6-fold, respectively.  Our results enriched the functions of animal hormones in plants.
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8. Two new SINE insertion polymorphisms in pig Vertnin (VRTN) gene revealed by comparative genomic alignment
ZHENG Yao, CHEN Cai, CHEN Wei, WANG Xiao-yan, WANG Wei, GAO Bo, Klaus WIMMERS, MAO Jiu-de, SONG Cheng-yi
Journal of Integrative Agriculture    2020, 19 (10): 2514-2522.   DOI: 10.1016/S2095-3119(20)63255-5
摘要125)      PDF    收藏
Despite one SINE retrotransposon insertion polymorphism (sRTIP) in the vertebrae development-associated (VRTN) gene was identified in pigs, the structural variations (SVs) in VRTN gene and its proximal flank regions were largely unknown.  VRTN genic and flanking sequences from 14 breeds were assembled or downloaded from whole-genome shotgun contings (WGS) database, and aligned to identify the SVs with Clustalx, and retrotransposons in VRTN gene were annotated by RepeatMasker, the splicing patterns of VRTN gene were predicted by Genescan, and large SVs were evaluated by PCR.  A total of 12 small SVs and three large SVs in intron of VRTN, derived from SINE insertion polymorphisms, were identified, and two of them (VRTN-sRTIP2 and VRTN-sRTIP3) were not reported before.  These VRTN-sRTIPs may affect the splicing patterns of VRTN.  They displayed polymorphisms in most detected eight breeds.  VRTN-sRTIP2 and VRTN-sRTIP3 showed Hardy-Weinberg equilibrium distributions in most populations except the Chinese local Erhualian pigs, while VRTN-sRTIP1 showed genetic equilibrium in Erhualian pigs.  Three VRTN-sRTIPs were identified, and displayed polymorphisms in pigs, and two of them were not reported before.  These SVs provide a useful molecular markers for genetic analysis in pigs, and offer new information to facilitate the understanding the SVs of VRTN gene and their putative roles in the variation of vertebral number.
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9. First report of a new potato disease caused by Galactomyces candidum F12 in China
SONG Su-qin, Lü Zhuo, WANG Jing, ZHU Jing, GU Mei-ying, TANG Qi-yong, ZHANG Zhi-dong, WANG Wei, ZHANG Li-juan, WANG Bo
Journal of Integrative Agriculture    2020, 19 (10): 2470-2476.   DOI: 10.1016/S2095-3119(20)63257-9
摘要123)      PDF    收藏
Potato (Solanum tuberosum L.) is an important crop throughout the world.  An uncharacterized disease has been observed on potato plants during the growing season and tubers during the storage period from Nileke County, Qitai County and other locations in Xinjiang, China.  A particular fungus was consistently isolated from the infected potato plants and tubers.  Based on its morphology, molecular characteristics, pathogenicity test and internal transcribed spacer (ITS) sequence, the pathogens was identified as Galactomyces candidum F12.  Further study also showed that the hyphae and conidia of the pathogenic fungus grew faster as the temperature was 30°C, pH was 7, soluble starch was used as optimal carbon source and yeast powder as optimal nitrogen source.  In addition, 12-h continuous illumination light was beneficial to the hyphal growth, while 24-h continuous illumination was beneficial to the sporulation of the strain at 30°C.  To our knowledge, this is the first report of Galactomyces candidum causing leaf wilt and postharvest tuber rot on potato in China.
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10. A joint use of emergy evaluation, carbon footprint and economic analysis for sustainability assessment of grain system in China during 2000–2015
WANG Xiao-long, WANG Wei, GUAN Yue-shan, XIAN Yuan-ran, HUANG Zhi-xin, FENG Hai-yi, CHEN Yong
Journal of Integrative Agriculture    2018, 17 (12): 2822-2835.   DOI: 10.1016/S2095-3119(18)61928-8
摘要251)      PDF    收藏
The rapid growth of grain yield in China accelerates a discussion on whether the grain system in China is sustainable.  To answer the question, a comprehensive assessment from economic and environmental points is necessary.  This study jointly used economic analysis (ECA), emergy evaluation (EME) and carbon footprint (CF) to analyze the environmental and economic sustainability of the grain production system in China based on the national statistical data during 2000–2015.  Results showed that the costs of maize, wheat, rice and soybean had increased by 252−346% from 2000 to 2015, causing the lower profit of grain system in recent years.  The situation resulted in a serious problem on economic sustainability of grain system in China.  Meanwhile, the emergy sustainability index (ESI) of maize, wheat, rice and soybean systems were increasing during 2000–2015, and the CF on unit yield of the crops had been reduced by 10−30% in the study period.  The results reflected the improved environmental sustainability of grain system in China during 2000–2015.  Nevertheless, the emergy flow of industrial inputs for the crops were increased by 4−22% in the study period, and the CF from the inputs presented a growth rate of 16−23% as well during the same period.  The results implied that the grain system in China was relying more on fossil-based inputs.  Finally, according to the key points of cost, emergy and CF, we suggest that improving labor efficiency, advanced agricultural practices and optimizing cropping pattern will be effective ways to further improve the economic and environmental sustainability of grain system in China.  
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11. Modeling the regional grazing impact on vegetation carbon sequestration ability in Temperate Eurasian Steppe
CHEN Yi-zhao, SUN Zheng-guo, QIN Zhi-hao, Pavel Propastin, WANG Wei, LI Jian-long, RUAN Hong-hua
Journal of Integrative Agriculture    2017, 16 (10): 2323-2336.   DOI: 10.1016/S2095-3119(16)61614-3
摘要488)      PDF    收藏
Anthropogenic activities profoundly influence carbon sequestration in the Eurasian Steppe.  In particular, grazing has been identified as having a major effect on carbon sequestration.  However, the extent to which grazing affects regional patterns or carbon sequestration is unknown.  In this study, we evaluated the impact of regional grazing on grassland carbon sequestration using the Boreal Ecosystem Productivity Simulator (BEPS) and the Shiyomi grazing model.  Model performances were validated against the results from field measurements and eddy covariance (EC) sites.  Model outputs showed that in 2008, the regional net primary productivity (NPP) was 79.5 g C m–2, and the net ecosystem productivity (NEP) was –6.5 g C m–2, characterizing the region as a weak carbon source.  The Mongol Steppe (MS) was identified as a carbon sink, whereas the Kazakh Steppe (KS) was either carbon neutral or a weak carbon source.  The spatial patterns of grazing density are divergent between the MS and the KS.  In the MS, livestock was mainly distributed in China with relatively good management, while in the KS livestock was mainly concentrated in the southern countries (especially Uzbekistan and Turkmenistan) with harsh environments and poor management.  The consumption percentages of NPP in Turkmenistan, Tajikistan and Uzbekistan were 5.3, 3.3 and 1.2%, respectively, whereas the percentages in other countries were lower than 1%.  Correspondingly, grazing consumption contributed to the carbon sources of Turkmenistan, Tajikistan and Uzbekistan by 11.6, 6.3 and 4.3%, respectively, while it weakened the carbon sink in Inner Mongolia, China and Mongolia by 1.6 and 0.5%.  This regional pattern should be affected by different sub-regional characteristics, e.g., the continuous degradation of grassland in the southern part of the KS and the restoration of grassland in Inner Mongolia, China.
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12. Effects of early energy and protein restriction on growth performance, clinical blood parameters, carcass yield, and tibia parameters of broilers
YANG Hai-ming, WANG Wei, WANG Zhi-yue, YANG Zhi, WAN Yan, HOU Bang-hong, HUANG Kaihua, LU Hao
Journal of Integrative Agriculture    2016, 15 (8): 1825-1832.   DOI: 10.1016/S2095-3119(15)61234-5
摘要1886)      PDF    收藏
   This study was conducted to investigate the effects of dietary energy and protein dilution from age 8 to 14 d on growth performance, clinical blood parameters, carcass yield, and tibia parameters of broilers. Treatments were assigned in a completely randomized manner with factorial arrangement (4×4) including 4 levels of energy dilution and 4 levels of protein dilution. All birds were fed the same diet during the remaining period of time. The feeds were weighed every week, and the birds were weighed at 7, 14, and 42 d. At 14 d, blood samples were taken for clinical chemistry measurements, and 4 birds from each replicate were sacrificed to measure carcass yield and tibia parameters at 42 d. From 8 to 14 d, average daily feed intake (ADFI) of the 20% protein dilution group increased significantly compared with that of the 10% protein dilution group (P<0.05). The feed conversion ratio (FCR) of the group with 30% protein dilution and 15% energy dilution creased the most among all treatment groups. From 15 to 42 d, the ADFI and FCR of the 20% protein dilution group were greater than those of the 0 and 10% protein dilution groups (P<0.05), and the FCR of the 15% energy dilution group increased significantly (P<0.05). At 42 d, body weight (BW) of the 15% energy dilution group was less than that of the other groups (P<0.05). Significant interactions were observed in ADFI, FCR, and BW at 42 d of age between energy dilution and protein dilution (P<0.05). At 14 d, serum total protein levels of birds in the 20 and 30% protein dilution groups decreased significantly compared to that of the 10% protein dilution group (P<0.05). Blood urea nitrogen concentration of birds in the 20 and 30% protein dilution groups decreased significantly compared with those in 0 and 10% protein dilution groups (P<0.05). Triacylglycerol concentration of birds in the 20% protein and 10% energy dilution groups decreased significantly compared with that of the 0 dilution group (P<0.05). The carcass yields were unaffected by dilution of energy and protein (P>0.05). The bone breaking strength of the 15% energy dilution group decreased significantly compared with that of the 5% energy dilution group (P<0.05). This study suggested that dietary protein and energy reduced 10% from 8 to 14 d of age can not affect the growth performance and other indexes in broilers.
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13. Effects of short-term osmotic stress on leaf hydraulic conductivity and ZmPIPs mRNA accumulation in maize seedlings
WANG Wei-feng, ZONG Yu-zheng, ZHANG Sui-qi
Journal of Integrative Agriculture    2016, 15 (11): 2497-2506.   DOI: 10.1016/S2095-3119(16)61466-1
摘要1326)      PDF    收藏
Plants maintain water balance by varying hydraulic properties, and plasma membrane intrinsic proteins (PIPs) may be involved in this process.  Leaf xylem and root hydraulic conductivity and the mRNA contents of four highly expressed ZmPIP genes (ZmPIP1;1, ZmPIP1;2, ZmPIP2;2, and ZmPIP2;5) in maize (Zea mays) seedlings were investigated.  Under well-watered conditions, leaf hydraulic conductivity (Kleaf) varied diurnally and was correlated with whole-plant hydraulic conductivity.  Similar diurnal rhythms of leaf transpiration rate (E), Kleaf and root hydraulic conductivity (Kroot) in well-watered plants are important for maintaining whole-plant water balance.  After 2 h of osmotic stress treatment induced by 10% polyethylene glycol 6000, the Kroot of stressed plants decreased but Kleaf increased, compared with well-watered plants.  The mRNA contents of four ZmPIPs were significantly up-regulated in the leaves of stressed plants, especially for ZmPIP1;2.  Meanwhile, ZmPIP2;5 was significantly down-regulated in the roots of stressed plants.  After 4 h of osmotic stress treatment, the E and leaf xylem water potentials of stressed plants unexpectedly increased.  The increase in Kleaf and a partial recovery of Kroot may have contributed to this process.  The mRNA content of ZmPIP1;2 but not of the other three genes was up-regulated in roots at this time.  In summary, the mRNA contents of these four ZmPIPs associated with Kleaf and Kroot change in maize seedlings during short-term osmotic stress, especially for ZmPIP1;2 and ZmPIP2;5, which may help to further reveal the hydraulic resistance adjustment role of ZmPIPs.  
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14. Comparison and analysis of QTLs for grain and hull thickness related traits in two recombinant inbred line (RIL) populations in rice (Oryza sativa L.)
YAO Xiao-yun, WANG Jia-yu, LIU Jin, WANG Wei, YANG Sheng-long, ZHANG Yu, XU Zheng-jin
Journal of Integrative Agriculture    2016, 15 (11): 2437-2450.   DOI: 10.1016/S2095-3119(15)61311-9
摘要1559)      PDF    收藏
    Grain traits are major constraints in rice production, which are key factors in determining grain yield and market values. This study used two recombinant inbred line (RIL) populations, RIL-JJ (japonica/japonica) and RIL-IJ (indica/japonica) derived from the two crosses Shennong 265/Lijiangxintuanheigu (SN265/LTH) and Shennong 265/Luhui 99 (SN265/LH99). Sixty-eight quantitative trait loci (QTLs) associated with 10 grain traits were consistently detected on the 12 chromosomes across different populations and two environments. Although 61.75% of the QTLs clustered together across two populations, only 16.17% could be detected across two populations. Eight major QTLs were detected on the 9, 10 and 12 chromosomes in RIL-JJ under two environments, a novel QTL clustered on the 10 chromosome, qGT10, qBT10 and qTGW10, have a higher percentage of explained phenotypic variation (PVE) and additive effect; 15 major QTLs were detected on the 5, 8, 9, and 11 chromosomes in RIL-IJ under two environments, a novel clustered QTL, qGT8 and qTGW8, on the 8 chromosome have a higher additive effect. Finally, the analysis of major QTL-BSA mapping narrowed the qTGW10 to a 1.47-Mb region flanked by simple sequence repeat markers RM467 and RM6368 on chromosome 10. A comparison of QTLs for grain traits in two different genetic backgrounds recombinant inbred line populations confirmed that genetic background had a significant impact on grain traits. The identified QTLs were stable across different populations and various environments, and 29.42% of QTLs controlling grain traits were reliably detected in different environments. Fewer QTLs were detected for brown rice traits than for paddy rice traits, 7 and 17 QTLs brown rice out of 25 and 43 QTLs under RIL-JJ and RIL-IJ populations, respectively. The identification of genes constituting the QTLs will help to further our understanding of the molecular mechanisms underlying grain shape.
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15. Isolation and identification of Serratia marcescens Ha1 and herbicidal activity of Ha1 ‘pesta’ granular formulation
YANG Juan, WANG Wei, YANG Peng, TAO Bu, YANG Zheng, ZHANG Li-hui, DONG Jin-gao
Journal of Integrative Agriculture    2015, 14 (7): 1348-1355.   DOI: 10.1016/S2095-3119(14)60967-9
摘要2038)      PDF    收藏
A total of 479 bacterial strains were isolated from brine (Bohai, Qinhuangdao City, Hebei Province, China). Bioassay results indicated that 4 strains named Ha1, Ha17, Ha38, and Ha384 had herbicidal activity. And strain Ha1 had the highest effective herbicidal activity. As a result, this study aims to identify strain Ha1, characterize its physiological and biological activities, evaluate the herbicidal activity of its metabolites, and develop a ‘pesta’ formulation and assess its effectiveness on Digitaria sanguinalis. Ha1 was identified as Serratia marcescens based on 16S rDNA sequencing. This strain has a flagellum, a diameter of 0.5 to 0.8 μm, and a length of 0.9 to 2.0 μm. The indole test shows positive results, and the catalase enzyme exhibits strong positive reactions. Results further showed that the inhibitory concentration (IC50) of the crude extracts to D. sanguinalis radicula and coleoptile were 3.332 and 2.828 mg mL–1, respectively. Both the suppression of D. sanguinalis and the cell viability of the Ha1 formulation in ‘pesta’ were higher when stored at 4°C than at (25±2)°C. These results indicated that S. marcescens Ha1 can potentially be used as a biocontrol agent against D. sanguinalis.
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16. Evaluation of nitrogen requirement and efficiency of rice in the region of Yangtze River Valley based on large-scale field experiments
CONG Ri-huan, ZHANG Zhi, LU Jian-wei, LI Xiao-kun, REN Tao, WANG Wei-ni
Journal of Integrative Agriculture    2015, 14 (10): 2090-2098.   DOI: 10.1016/S2095-3119(14)60946-1
摘要1646)      PDF    收藏
Overestimation of nitrogen (N) uptake requirement is one of the driving forces of the overuse of N fertilization and the low efficiency of N use in China. In this study, we collected data from 1 844 site-years of rice (Oryza sativa L.) under various rotation cropping systems across the Yangtze River Valley. Selected treatments included without (N0 treatment) and with N application (N treatment) which were recommended by local technicians, with a wide grain range of 1.5–11.9 t ha–1. Across the 1 844 site-years, over 96% of the sites showed yield increase (relative yield>105%) with N fertilization, and the increase rates decreased from 78.9 to 16.2% within the lowest range <4.0 to the highest >6.5 t ha–1. To produce one ton of grain, the rice absorbed approximately 17.8 kg N in the N0 treatment and 20.4 kg N in the N treatment. The value of partial factor productivity by N (PFPN) reached a range of 35.2–51.4 kg grain kg–1 with N application under the current recommended N rate. Averaged recovery rate of N (REN) was above 36.0% in yields below 6.0 t ha–1 and lower than 31.7% in those above 6.0 t ha–1. Soil properties only affected yield increments within low rice yield levels (<5.5 t ha–1). There is a poor relationship between N application rates and indigenous nitrogen supply (INS). From these observations and considering the local INS, we concluded there was a great potential for improvement in regional grain yield and N efficiency.
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17. Isolation, Identification, and Herbicidal Activity of Metabolites Produced by Pseudomonas aeruginosa CB-4
YANG Juan, CAO Hong-zhe, WANG Wei, ZHANG Li-hui , DONG Jin-gao
Journal of Integrative Agriculture    2014, 13 (8): 1719-1726.   DOI: 10.1016/S2095-3119(13)60695-4
摘要1796)      PDF    收藏
CB-4, a bacterial strain with highly effective herbicidal activity, was isolated from infected corn leaves. Through morphology, physiological and biochemical tests, and 16S ribosomal DNA gene sequencing methods, CB-4 was identified as Pseudomonas aeruginosa. We conducted activity-evaluation experiments in the laboratory to assess the herbicidal potential of metabolites produced by strain CB-4. Crude extracts of strain CB-4 have high inhibition activity on Digitaria sanguinalis. In general, the root and shoot growth parameters of D. sanguinalis were significantly reduced by metabolites of strain CB-4. The IC50 of the culture filtrate extracts for the radicula and coleoptile of D. sanguinalis were 0.299 and 0.210 mg mL-1, respectively. Component 2 of the herbicidal activity of the crude toxin from strain CB-4 was successfully purified for the first time by using high-speed counter current chromatography with a two-phase solvent system composed of petroleum ether-ethyl acetate-methanol-water (4:5:4:5, v/v) and high-performance liquid chromatography. We concluded that the metabolites of strain CB-4 have the potential to be developed as a microbe-based herbicide.
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18. Carbon and Nitrogen Contents in Typical Plants and Soil Profiles in Yanqi Basin of Northwest China
ZHANG Juan, WANG Xiu-jun, WANG Jia-ping, WANG Wei-xia
Journal of Integrative Agriculture    2014, 13 (3): 648-656.   DOI: 10.1016/S2095-3119(13)60723-6
摘要1293)      PDF    收藏
Carbon and nitrogen are the most important elements in the terrestrial ecosystem. Studying carbon and nitrogen distributions in plant and soil is important for our understanding of the ecosystem dynamics and carbon cycle on arid lands. A study was conducted in a typical arid area, the Yanqi Basin, Northwest China. Carbon and nitrogen distributions in plant tissues and soil profiles were determined at 21 sites with typical native plants and crops. Our results indicated that carbon content was similar between crops and native plants, and the average carbon contents in aboveground (42.4%) and belowground (42.8%) tissues were almost the same. Average nitrogen contents in crops were nearly the same (~0.7%) in aboveground and belowground tissues whereas mean nitrogen content was approximately 100% higher in aboveground (2.2%) than in belowground (1.2%) tissues for native species. Soil organic carbon (SOC) and total nitrogen (TN) in cropland (9.4 and 0.9 g kg-1) were significantly higher than those in native land (6.2 and 0.7 g kg-1). Multiple regression analyses indicated that carbon content in belowground tissue and nitrogen content in aboveground tissue were key factors connecting plant and soil in native land. However, there was no significant relationship for carbon or nitrogen between soil and crop, which might reflect human disturbance, such as plowing and applications of various organic materials.
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19. Comparing Immature Development and Life History Traits in Two Coexisting Host-Feeding Parasitoids, Diglyphus isaea and Neochrysocharis formosa (Hymenoptera: Eulophidae)
ZHANG Yi-bo, LU Shu-long, LIU Wan-xue, WANG Wen-xia, WANG Wei , WAN Fang-hao
Journal of Integrative Agriculture    2014, 13 (12): 2690-2700.   DOI: 10.1016/S2095-3119(14)60868-6
摘要1377)      PDF    收藏
Coexisting natural enemies that share a common host resource in the same guild usually exhibit variation in their life history traits, due to their need to share a similar ecological niche. In this study, we compared the immature development times and adult life history traits of two coexisting, host-feeding parasitoids, Diglyphus isaea Walker and Neochrysocharis formosa Westwood (Hymenoptera: Eulophidae), of which both attack larvae of the same agromyzid leafminers. These two species are both synovigenic, idiobiont parasitoids, whose adults consume host fluids (“host feeding”) and lay anhydropic eggs. Of the two, D. isaea has a larger body but little or no initial egg load, and engages in similar lifetime host-feeding events. However, it achieves higher fecundity, longer adult longevity, and higher host suppression ability than N. formosa, which has a smaller body and higher initial egg load. Although D. isaea engages in similar lifetime host-feeding events with N. formosa, all of its gains in life history traits per host-feeding event of D. isaea were larger than those of N. formosa. The age-specific fecundity and host mortality curves of N. formosa were more skewed in early life than those of D. isaea. In addition, the ovigeny index of N. formosa was negatively correlated to body size. Our results confirmed that two coexisting parasitoids, which share the same host resource, show different immature development patterns and life history traits, suggesting that different resource allocation mode could be a general rule of coexisting species sharing the same habitat or host.
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20. Functional Characteristics of a Novel Chemosensory Protein in the Cotton Bollworm Helicoverpa armigera (Hübner)
ZHANG Tian-tao, WANG Wei-xuan, ZHANG Zi-ding, ZHANG Yong-jun , GUO Yu-yuan
Journal of Integrative Agriculture    2013, 12 (5): 853-861.   DOI: 10.1016/S2095-3119(13)60304-4
摘要1743)      PDF    收藏
A chemosensory protein named HarmCSP5 in cotton bollworm Helicoverpa armigera (Hübner) was obtained from antennal cDNA libraries and expressed in Escherichia coli. The real time quantitative PCR (RT-qPCR) results indicated that HarmCSP5 gene was mainly expressed in male and female antennae but also expressed in female legs and wings. Competitive binding assays were performed to test the binding affinity of recombinant HarmCSP5 to 60 odor molecules including some cotton volatiles. The resules showed that HarmCSP5 showed strong binding abilities to 4-ehtylbenzaldehyde and 3,4-dimethlbenz aldehyde, whereas methyl phenylacetate, 2-decanone, 1-pentanol, carvenol, isoborneol, nerolidol, 2- nonanone and ethyl heptanoate have relatively weak binding affinity. Moreover, the predicted 3D model of HarmCSP5 consists of six α-helices located among residues 33-38 (α1), 40-48 (α2), 62-72 (α3), 80-96 (α4), 98-108 (α5), and 116-119 (α6), two pairs of disulfide bridges Cys49-Cys55, Cys75-Cys78. The two amino acid residues, Ile94 and Trp101, may play crucial roles in HarmCSP5 binding with ligands and need further study for confirmation.
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21. Construction of Two Suppression Subtractive Hybridization Libraries and Identification of Salt-Induced Genes in Soybean
LI Liang, WANG Wei-qi, HAN Tian-fu, HOU Wen-sheng
Journal of Integrative Agriculture    2012, 12 (7): 1075-1085.   DOI: 10.1016/S1671-2927(00)8632
摘要1467)      PDF    收藏
Soybean is planted worldwide and its productivity is significantly hampered by salinity. Development of salt tolerant cultivars is necessary for promoting soybean production. Despite wealth of information generated on salt tolerance mechanism, its basics still remain elusive. A continued effort is needed to understand the salt tolerance mechanism in soybean using suitable molecular tools. To better understand the molecular basis of the responses of soybean to salt stress and to get an enrichment of critical salt stress responsive genes in soybean, suppression subtractive hybridization libraries (SSH) are constructed for the root tissue of two cultivated soybean genotypes, one was tolerant and the other was sensitive to salt stress. To compare the responses of plants in salt treatment and non-treatment, SSH1 was constructed for the salt-tolerant cultivar Wenfeng 7 and SSH2 was constructed for the salt-sensitive cultivar Union. From the two SSH cDNA libraries, a total of 379 high quality ESTs were obtained. These ESTs were then annotated by performing sequence similarity searches against the NCBI nr (National Center for Biotechnology Information protein non-redundant) database using the BLASTX program. Sixty-three genes from SSH1 and 49 genes from SSH2 could be assigned putative function. On the other hand, 25 ESTs of SSH1 which may be not the salt tolerance-related genes were removed by comparing and analyzing the ESTs from the two SSH libraries, which increased the proportion of the genes related to salt tolerance in SSH1. These results suggested that the novel way could realize low background of SSH and high level enrichment of target cDNAs to some extent.
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22. Structure, Binding Characteristics, and 3D Model Prediction of a Newly Identified Odorant-Binding Protein from the Cotton Bollworm, Helicoverpa armigera (Hübner)
ZHANG Tian-tao, WANG Wei-xuan, ZHANG Zi-ding, ZHANG Yongjun, GUO Yu-yuan
Journal of Integrative Agriculture    2012, 12 (3): 430-438.   DOI: 10.1016/S1671-2927(00)8561
摘要1481)      PDF    收藏
The full-length sequence of the odorant binding protein 5 gene, HarmOBP5, was obtained from an antennae cDNA library of cotton bollworm, Helicoverpa armigera (Hübner). The cDNA contains a 444 bp open reading frame, encoding a protein with 147 amino acids, namely HarmOBP5. HarmOBP5 was expressed in Escherichia coli and the recombinant protein was purified by affinity chromatography. SDS-PAGE and Western blot analysis demonstrated that the purified protein can be used for further investigation of its binding characteristics. Competitive binding assays with 113 odorant chemicals indicated that HarmOBP5 has strong affinity to some special plant volatiles, including (E)-β-farnesene, ethyl butyrate, ethyl heptanoate, and acetic acid 2-methylbutyl ester. Based on three-dimensional (3D) model of AaegOBP1 from Aedes aegypti, a 3D model of HarmOBP5 was predicted. The model revealed that some key binding residues in HarmOBP5 may play important roles in odorant perception of H. armigera. This study provides clues for better understanding physiological functions of OBPs in H. armigera and other insects.
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23. Estimates of N2O Emissions and Mitigation Potential from a Spring Maize Field Based on DNDC Model
LI Hu, QIU Jian-jun, WANG Li-gang, XU Ming-yi, LIU Zhi-qiang, WANG Wei
Journal of Integrative Agriculture    2012, 12 (12): 2067-2078.   DOI: 10.1016/S1671-2927(00)8745
摘要1437)      PDF    收藏
Agricultural production plays an important role in affecting atmospheric nitrous oxide (N2O) concentrations. Field measurements were conducted in Dalian City, Liaoning Province in Northeast China from two consecutive years (2009 and 2010) to estimate N2O emissions from a spring maize field, a main cropping system across the Chinese agricultural regions. The observed flux data in conjunction with the local climate, soil and management information were utilized to test a process-based model, DeNitrification-DeComposition (DNDC), for its applicability for the cropping system. The validated DNDC was then used for exploring strategies to reduce N2O emissions from the target field. The results showed that the major N2O pulse emissions occurred with duration of about 3-5 d after fertilizer application in both years 2009 and 2010, which on average accounted for about 60% of the total N2O emissions each year. Rainfall and fertilizer application were the major factors influencing the N2O emissions from spring maize field. The average N2O fluxes from the CK (control plot, without fertilization) and FP (traditional chemical N fertilizer) treatments were 23.1 and 60.6 μg m-2 h-1 in 2009, respectively, and 21.5 and 64.3 μg m-2 h-1 in 2010, respectively. The emission factors (EFs) of the applied N fertilizer (270 kg N ha-1) as N2ON were 0.62% in 2009 and 0.77% in 2010, respectively. The comparison of modeled daily N2O emission fluxes against observations indicated that the DNDC model had a good performance even if without adjusting the internal parameters. The modeled results showed that management practices such as no-till, changing timing or rate of fertilizer application, increasing residue incorporation, and other technically applicable measures could effectively reduce N2O emissions from the tested fields. Our study indicated that avoiding application of N fertilizers at heavy rainfall events or splitting the fertilizer into more applications would be the most feasible approaches to reduce N2O emissions from spring maize production in Northeast China.
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24. Common Spectral Bands and Optimum Vegetation Indices for Monitoring Leaf Nitrogen Accumulation in Rice andWheat
WANG Wei, YAO Xia, TIAN Yong-chao, LIU Xiao-jun, NI Jun, CAO Wei-xing , ZHU Yan
Journal of Integrative Agriculture    2012, 12 (12): 2001-2012.   DOI: 10.1016/S1671-2927(00)8737
摘要1342)      PDF    收藏
Real-time monitoring of nitrogen status in rice and wheat plant is of significant importance for nitrogen diagnosis, fertilization recommendation, and productivity prediction. With 11 field experiments involving different cultivars, nitrogen rates, and water regimes, time-course measurements were taken of canopy hyperspectral reflectance between 350-2 500 nm and leaf nitrogen accumulation (LNA) in rice and wheat. A new spectral analysis method through the consideration of characteristics of canopy components and plant growth status varied with phenological growth stages was designed to explore the common central bands in rice and wheat. Comprehensive analyses were made on the quantitative relationships of LNA to soil adjusted vegetation index (SAVI) and ratio vegetation index (RVI) composed of any two bands between 350-2 500 nm in rice and wheat. The results showed that the ranges of indicative spectral reflectance were largely located in 770-913 and 729-742 nm in both rice and wheat. The optimum spectral vegetation index for estimating LNA was SAVI (R822,R738) during the early-mid period (from jointing to booting), and it was RVI (R822,R738) during the mid-late period (from heading to filling) with the common central bands of 822 and 738 nm in rice and wheat. Comparison of the present spectral vegetation indices with previously reported vegetation indices gave a satisfactory performance in estimating LNA. It is concluded that the spectral bands of 822 and 738 nm can be used as common reflectance indicators for monitoring leaf nitrogen accumulation in rice and wheat.
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25. Effects of Long-Term Fertilization on the Distribution of Carbon, Nitrogen and Phosphorus in Water-Stable Aggregates in Paddy Soil
WANG Wei, CHEN Wei-cai, WANG Kai-rong, XIE Xiao-li, YIN Chun-mei , CHEN An-lei
Journal of Integrative Agriculture    2011, 10 (12): 1932-1940.   DOI: 10.1016/S1671-2927(11)60194-6
摘要1901)      PDF    收藏
We investigated the size distribution of water-stable aggregates and the soil carbon, nitrogen and phosphorus concentration
over aggregate size fractions based on a long-term (1990-2006) fertilization experiment in a reddish paddy soil. The results
showed that the largest water-stable aggregate (WSA) (>5 mm) and the smallest WSA (<0.25 mm) took up the first largest
proportion (38.3%) and the second largest proportion (23.3%), respectively. Application of organic materials increased
the proportion of the large WSA (>2 mm) and decreased the proportion of the small WSA (<1 mm), resulting in an increase
in the mean weight diameter of WSA, whereas application of chemical fertilizer had little effect. Application of organic
materials, especially combined with chemical fertilizers, increased total carbon, nitrogen and phosphorus concentrations
in all sizes of WSA, and total carbon, nitrogen and phosphorus were prone to concentrate in the large WSA. Further more,
application of organic materials improved the supply effectiveness of available phosphorus, whereas had little influence
on the labile carbon in WSA. Application of chemical fertilizers improved concentrations of total and available phosphorus
in all sizes of WSA, whereas had little influence on total carbon and nitrogen contents. Economical fertilization model
maintained the soil fertility when compared with full dose of chemical fertilizers, indicating that using organic materials
could reduce chemical fertilizers by about one third.We investigated the size distribution of water-stable aggregates and the soil carbon, nitrogen and phosphorus concentration over aggregate size fractions based on a long-term (1990-2006) fertilization experiment in a reddish paddy soil. The results showed that the largest water-stable aggregate (WSA) (>5 mm) and the smallest WSA (<0.25 mm) took up the first largest proportion (38.3%) and the second largest proportion (23.3%), respectively. Application of organic materials increased the proportion of the large WSA (>2 mm) and decreased the proportion of the small WSA (<1 mm), resulting in an increase in the mean weight diameter of WSA, whereas application of chemical fertilizer had little effect. Application of organic materials, especially combined with chemical fertilizers, increased total carbon, nitrogen and phosphorus concentrations in all sizes of WSA, and total carbon, nitrogen and phosphorus were prone to concentrate in the large WSA. Further more, application of organic materials improved the supply effectiveness of available phosphorus, whereas had little influence on the labile carbon in WSA. Application of chemical fertilizers improved concentrations of total and available phosphorus in all sizes of WSA, whereas had little influence on total carbon and nitrogen contents. Economical fertilization model maintained the soil fertility when compared with full dose of chemical fertilizers, indicating that using organic materials could reduce chemical fertilizers by about one third.
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