jia-2021-1125 PAY1基因对水稻不同生育期冠层结构影响的定量分析

doi:10.1016/j.jia.2022.08.093

摘要/Abstract

摘要：

叶型和茎型是水稻株型的核心冠层结构特征，决定了及其冠层光截获能力，直接影响着作物产量。PLANT ARCHITECTURE AND YIELD 1(PAY1)基因被证实能够改变野生稻匍匐特性，对野生稻匍匐生长习性基因PROSTRATE GROWTH 1（PROG1）具有一定抑制作用。本文选择含有PROG1基因的水稻材料YIL55及其突变体PAY1，以及其母本TQ为供试材料，基于三维数字化测定技术，构建了三种株型水稻的冠层三维结构模型。在此基础上，定量分析在PAY1基因作用下，植株叶型和茎型在拔节期、抽穗期和灌浆期的变化。结果表明，在PAY1基因影响下，植株茎叶夹角显著降低并趋于直立，叶片增大，植株茎集散度由松散型转变为紧凑型，三个关键生育期时的平均茎倾角由44.9°、28.5°、21.3°分别减小至17.6°、8.4°、10.5°。此外，PAY1基因保留了PROG1基因水稻全生育期分蘖角度动态变化的特性，茎集散度由拔节期的松散型变化为抽穗期时的紧凑型。冠层光合有效辐射测定结果也表明突变体PAY1的株型结构更有利于冠层底部的光截获，其在早、中、晚的消光系数分别为0.535、0.312、0.586，均低于其他两种株型。本文通过定量分析PAY1基因对水稻冠层结构特征的影响，旨在为株型选育提供有效冠层结构特征参数，为理想株型育种提供借鉴。

Abstract: The leaf and stem types are core structural characteristics of the rice phenotype that determine the light interception ability of the canopy and directly affect crop yield. The PLANT ARCHITECTURE AND YIELD 1 (PAY1) gene has been shown to alter the prostrate growth habit of wild rice and to inhibit the wild rice prostrate growth gene PROSTRATE GROWTH 1 (PROG1). In this paper, the wild rice introgression line YIL55, which contains the PROG1 gene; its mutant, PAY1; and its parent, TQ, were used as test varieties to construct three-dimensional (3D) canopy structure models based on 3D digital assay technology. On this basis, quantitative analyses of the PAY1 gene and the plant leaf and stem types at the jointing, heading and filling stages were performed. Under the influence of the PAY1 gene, the plant stem and leaf angles from vertical decreased significantly; the plants were upright, with larger leaves; the culm angle changed from loose to compact; and the average tiller angle during the three key reproductive stages decreased from 44.9, 28.5 and 21.3° to 17.6, 8.4 and 10.5°, respectively. Moreover, the PAY1 mutant retained the PROG1 gene characteristic of exhibiting dynamic changes in the tiller angle throughout the growth period, and its culm angle changed from loose during the jointing stage to compact during the heading stage. The measurements of photosynthetically active radiation (PAR) in the canopy also showed that the mutant PAY1 allowed more PAR to reach the bottom of the canopy than the other varieties. The light-extinction coefficients for PAY1 at the jointing, heading and filling stages were 0.535, 0.312 and 0.586, respectively, which were lower than those of the other two varieties. In this study, the influence of the PAY1 gene on rice canopy structural characteristics was quantitatively analyzed to provide effective canopy structure parameters for breeding the ideal plant type.

Key words: rice , plant type , 3D digitization technology , canopy structure

. jia-2021-1125 PAY1基因对水稻不同生育期冠层结构影响的定量分析[J]. Journal of Integrative Agriculture, 2022, 21(12): 3488-3500.

WEI Cui-lan, CAO Bing-shuai, HUA Shan, LI Bao-guo. Quantitative analysis of the effect of the PAY1 gene on rice canopy structure during different reproductive stages[J]. Journal of Integrative Agriculture, 2022, 21(12): 3488-3500.

参考文献

Arite T, Iwata H, Ohshima K, Maekawa M, Nakajima M, Kojima M, Sakakibara H, Kyozuka J. 2007. DWARF10, an RMS1/MAX4/DAD1 ortholog, controls lateral bud outgrowth in rice. The Plant Journal, 51, 1019–1029.
Bachelet D, Brown D, BHm M, Ressell P. 1992. Climate change in Thailand and its potential impact on rice yield. Climatic Change, 21, 347–366.
Bouman B A M, Kropff M J, Tuong T P. 2001. ORYZA2000: Modeling Lowland Rice. International Rice Research Institute, Los Banos, Philippines, and Wageningen University and Research Centre. Wageningen, Netherlands. p. 235.
Cao B S, Hua S, Ma Y T, Li B G, Sun C Q. 2017. Evaluation of ORYZA2000 for simulating rice growth of different genotypes at two latitudes. Agronomy Journal, 109, 2613–2629.
Chang L Y, Gu D X, Zhang W Y, Yang J, Cao W X. 2008. A simulation model of leaf elongation process in rice. Acta Agronomica Sinica, 34, 311–317. (in Chinese)
Chen W, Xi Z, Yang S. 2000. Creation of new plant type and breeding super rice in northern China. Rice Science, 8, 13–14.
Ding C, Luo X K, Wu Q, Lu B, Ding Y F, Wang S H, Li G H. 2021. Compact plant type rice has higher lodging and N resistance under machine transplanting. Journal of Integrative Agriculture, 20, 65–77.
Falster D S, Westoby M. 2003. Leaf size and angle vary widely across species: What consequences for light interception? New Phytologist, 158, 509–525.
Fan M S, Shen J B, Yuan L X, Jiang R F, Chen X P, Davies W J, Zhang F S. 2012. Improving crop productivity and resource use efficiency to ensure food security and environmental quality in China. Journal of Experimental Botany, 63, 13–24.
Guo Y, Li B G. 1999. Mathematical description and three-dimensional reconstruction of maize canopy. Chinese Journal of Applied Ecology, 10, 41–43. (in Chinese)
Hua S, Cao B S, Zheng B Y, Li B G, Sun C Q. 2016. Quantitative evaluation of influence of PROSTRATE GROWTH 1 gene on rice canopy structure based on three-dimensional structure model. Field Crops Research, 194, 65–74.
Ishikawa S, Maekawa M, T, Onishi K, Takamure I, Kyozuka J. 2005. Suppression of tiller bud activity in tillering dwarf mutants of rice. Plant and Cell Physiology, 46, 79–86.
Jin J, Huang W, Gao J P, Yang J, Shi M, Zhu M Z, Luo D, Lin H X. 2008. Genetic control of rice plant architecture under domestication. Nature Genetics, 40, 1365–1369.
Kang W Q, Ouyang Y N, Dong C Q, Zhu L F, Yu S M, Xu D H, Jin Q Y. 2007. Discussion on the dynamic plant type and its indexes in rice. China Rice, 13, 1–6. (in Chinese)
Kaitaniemi P, Room P M, Hanan J S. 1999. Architecture and morphogenesis of grain sorghum, Sorghum bicolor (L.) Moench. Field Crops Research, 61, 51–60.
Kempthorne D M, Turner I W, Belward J A, McCue S W, Barry M, Young J, Dorr G J, Hanan J, Zabkiewicz J A. 2015. Surface reconstruction of wheat leaf morphology from three-dimensional scanned data. Functional Plant Biology, 42, 444–451.
King D A. 1997. The functional significance of leaf angle in Eucalyptus. Australian Journal of Botany, 45, 619–639.
Kumagai E, Araki T, Ueno O. 2009. Effect of nitrogen-deficiency on midday photoinhibition in flag leaves of different rice (Oryza sativa L.) cultivars. Photosynthetica, 47, 241–246.
Kumagai E, Hamaoka N, Araki T, Ueno O. 2014. Dorsoventral asymmetry of photosynthesis and photoinhibition in flag leaves of two rice cultivars that differ in nitrogen response and leaf angle. Physiologia Plantarum, 151, 533–543.
Li P J, Wang Y H, Qian Q, Fu Z M, Wang M, Zeng D L, Li B H, Wang X J, Li J Y. 2007. LAZY1 controls rice shoot gravitropism through regulating polar auxin transport. Cell Research, 17, 402–410.
Li X Y, Qian Q, Fu Z M, Wang Y H, Xiong G S, Zeng D L, Wang X Q, Liu X F, Teng S, Hiroshi F J M T, Yuan M, Luo D, Han B, Li J Y. 2003. Control of tillering in rice. Nature, 422, 618–621.
Monsi M T. 1953. Uber den Lichtfaktor in den Pflanzengesellschaften und seine Bedeutung fur die Stoffproduktion. Japanese Journal of Botany, 14, 22–52. (in German)
Murchie E, Chen Y Z, Hubbart-Edwards S, Peng S B. 1999. Interactions between senescence and leaf orientation determine in situ patterns of photosynthesis and photoinhibition in field-grown rice. Plant Physiology, 119, 553–564.
Murchie E H, Pinto M, Horton P. 2009. Agriculture and the new challenges for photosynthesis research. The New Phytologist, 181, 532–552.
National Bureau of Statistics of China. 2016. China Statistical Yearbook. China Agriculture Press, Beijing, China. (in Chinese)
Parzen E. 1962. On estimation of a probability density function and mode. The Annals of Mathematical Statistics, 33, 1065–1076.
Peng S B, Khush G S, Virk P, Tang Q Y, Zou Y B. 2008. Progress in ideotype breeding to increase rice yield potential. Field Crops Reseach, 108, 32–38.
Qiao G X, Wen W L, Guo X Y, Wei C L, Zhao G H, Wang J. 2011. Research on visualization of plant stalk. Computer Engineering and Applications, 35, 164–167.
Rosenblatt M. 1956. Remarks on some nonparametric estimates of a density function. Annals of Mathematical Statistics, 27, 832–837.
Sakamoto T, Morinaka Y, Ohnishi T, Sunohara H, Fujioka S, Ueguchi-Tanaka M, Mizutani M, Sakata K, Takatsuto S, Yoshida S, Tanaka H, Kitano H, Matsuoka M. 2006. Erect leaves caused by brassinosteroid deficiency increase biomass production and grain yield in rice. Nature Biotechnology, 24, 105–109.
Sasaki A, Ashikari M, Ueguchi-Tanaka M, Itoh H, Nishimura A, Swapan D, Ishiyama K, Saito T, Kobayashi M, Khush G S, Kitano H, Matsuoka M. 2002. Green revolution: A mutant gibberellin-synthesis gene in rice. Nature, 416, 701–702.
Shi C L, Zhu Y, Cao W X. 2006. A quantitative analysis on leaf curvature characteristics in rice. Acta Agronomica Sinica, 32, 656–660. (in Chinese)
Sinclair T R, Sheehy J E. 1999. Erect leaves and photosynthesis in rice. Science, 283, 1456–1457.
Sonohat G, Sinoquet H, Varlet-Grancher C, Rakocevic M, Jacquet A, Simon J C, Adam B. 2002. Leaf dispersion and light partitioning in three-dimensionally digitized tall fescue-white clover mixtures. Plant, Cell and Environment, 25, 529–538.
Sun X C. 1985. Studies on classification of leaf types of rice and its relation with photosynrhesis. Scientia Agricultura Sinica, 4, 49–55. (in Chinese)
Tan L B, Li X R, Liu F X, Sun X Y, Li C G, Zhu Z F, Fu Y C, Cai H W, Wang X K. 2008. Control of a key transition from prostrate to erect growth in rice domestication. Nature Genetics, 40, 1360–1364.
Thanisawanyangkura S, Sinoquet H, Rivet P, Cretenet M, Jallas E. 1997. Leaf orientation and sunlit leaf area distribution in cotton. Agricultural and Forest Meteorology, 86, 1–15.
Wang H M, Ouyang Y N, Liu F M, Zhu L F, Yu S M, Jin Q Y. 2010. Advance in research of light energy utilization efficiency related to plant type in rice. China Rice, 16, 12–15. (in Chinese)
Wang Q A, Lu C M, Zhang Q D. 2005. Midday photoinhibition of two newly developed super-rice hybrids. Photosynthetica, 43, 277–281.
Wang X P, Guo Y, Li B G, Wang X Y, Ma Y T. 2006. Evaluating a three dimensional model of diffuse photosynthetically active radiation in maize canopies. International Journal of Biometeorology, 50, 349–357.
Wang Y Y, Wen W L, Guo X Y, Zhao G H, Lu S L, Xiao B X. 2011. Virtual realization of tobacco leaves based on ball B-spline function. Transactions of the Chinese Society of Agricultural Engineering, 27, 230–235. (in Chinese)
Watanabe T, Hanan J S, Room P M, Hasegawa T, Nakagawa H, Takahashi W. 2005. Rice morphogenesis and plant architecture: Measurement, specification and the reconstruction of structural development by 3D architectural modelling. Annals of Botany, 95, 1131–1143.
Wu X, Tang D, Li M, Wang K, Cheng Z. 2013. Loose Plant Architecture1, an INDETERMINATE DOMAIN protein involved in shoot gravitropism, regulates plant architecture in rice. Plant Physiology, 161, 317–329.
Yu B S, Lin Z W, Li H X, Li X J, Li J Y, Wang Y H, Zhang X, Zhu Z F, Zhai W X, Wang X K, Xie D X, Sun C Q. 2007. TAC1, a major quantitative trait locus controlling tiller angle in rice. The Plant Journal, 52, 891–898.
Yuan L P. 2015. Development of super hybrid rice for food security in China. Engineering, 1, 13–14.
Yuan L P. 1997a. Hybrid rice breeding for super high yield. In: Denning G L, Mew T W, eds., China and IRRI Improving China’s Rice Productivity in the 21st Century. IRRI Discussion Papers 287591. International Rice Research Institute (IRRI), Philippines.
Yuan L P. 1997b. Super-high yield hybrid rice breeding. Hybrid Rice, 12, 4–9. (in Chinese)
Yuan L P. 2001. Breeding of super hybrid rice. In: Peng S, Hardy B, eds., Rice Research for Food Security and Poverty Alleviation. Nternational Rice Research Institute. Los Banos, Philippines. pp. 143–149.
Zang Y H, Yang Y B, Chen C L, Zang K T, Jiang H Y, Cao W X, Zhu Y. 2022. Modeling leaf color dynamics of winter wheat in relation to growth stages and nitrogen rates. Journal of Integrative Agriculture, 21, 60–69.
Zhang L Y, Bai M Y, Wu J X. 2009. Antagonistic HLH/bHLH transcription factors mediate brassinosteroid regulation of cell elongation and plant development in rice and Arabidopsis. Plant Cell, 21, 3767–3780.
Zhang X, Wang D, Fang F, Liao X. 2005. Food safety and rice production in China. Research of Agricultural Modernization, 26, 85–88.
Zhao L, Tan L B, Zhu Z F, Xiao L T, Xie D X, Sun C Q. 2015. PAY1 improves plant architecture and enhances grain yield in rice. The Plant Journal, 83, 528–536.
Zheng B Y. 2010. Evaluation of 3-D structure and function and simulation of growth for the canopies of super high-yielding rice. Ph D thesis, China Agricultural University, Beijing, China. (in Chinese)
Zheng B Y, Biddulph B, Li D, Haydn K, Scott1 C. 2013. Quantification of the effects of VRN1 and Ppd-D1 to predict spring wheat (Triticum aestivum) heading time across diverse environments. Journal of Experimental Botany, 64, 3747–3761.
Zheng B Y, Shi L J, Ma Y T, Deng Q Y, Li B G, Guo Y. 2008. Comparison of architecture among different cultivars of hybrid rice using a spatial light model based on 3-D digitising. Functional Plant Biology, 35, 900–910.
Zheng B Y, Shi L J, Ma Y T, Deng Q Y, Li B G, Guo Y. 2009. Three-dimensional digitization in situ of rice canopies and virtual stratified-clipping method. Scientia Agricultura Sinica, 42, 1181–1189. (in Chinese)
Zheng W G, Guo X Y, Zhao C J, Wang J H. 2004. Geometry modeling of the maize leaf canopy. Transactions of the Chinese Society of Agricultural Engineering, 1, 152–154. (in Chinese)
Zhou H Q, Chen J Y, He K M, Pan D J, Fan Z L, Li C. 2005. Culm angle analysis and standard record of rice varieties. Journal of Plant Genetic Resources, 6, 457–459.
Zou J H, Zhang S Y, Zhang W P. 2006. The rice HIGH-TILLERING DWARF1 encoding an ortholog of Arabidopsis MAX3 is required for negative regulation of the outgrowth of axillary buds. The Plant Journal, 48, 687–698.