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1. 一个编码B-BOX蛋白的GhDR基因上的2bp移码缺失与陆地棉矮杆红叶性状共分离
WANG Xue-feng, SHAO Dong-nan, LIANG Qian, FENG Xiao-kang, ZHU Qian-hao, YANG Yong-lin, LIU Feng, ZHANG Xin-yu, LI Yan-jun, SUN Jie, XUE Fei
Journal of Integrative Agriculture    2023, 22 (7): 2000-2014.   DOI: 10.1016/j.jia.2022.10.007
摘要291)      PDF    收藏

株型和叶色是棉花纤维产量的重要影响因素。本研究基于遗传分析、茎秆石蜡切片和植物激素处理方法,发现棉花矮红突变体DR一个赤霉素敏感型突变体,由一个单显性基因位点突变引起,将其命名为GhDR。通过BSA-seq结合靶向测序基因型检测GBTS方法控制突变性状基因定位A09 染色体约197 kb候选区间包含 25 个注释基因。基于候选基因的注释信息及其在突变体和正常植株之间的序列和表达差异GH_A09G2280基因被认为是控制矮红突变体表型的最佳候选基因。在DR突变体GhDR/GH_A09G2280基因编码区发现一个2 bp缺失,导致GhDR基因产生移码突变,蛋白翻译提前终止GhDR是拟南芥AtBBX24的同源基因,编码B-box锌指蛋白。移码缺失导致GhDR C末端缺失核定位结构域和VP结构,并改变了其亚细胞定位结果比较转录组分析表明,在DR突变体中,参与赤霉素生物合成和信号转导的关键基因下调表达,而与赤霉素降解和花青素生物合成相关基因上调表达。研究初步揭示了GhDR基因同时调控棉花株型和花青素积累的潜在分子机制

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2. 中麦578/济麦22群体产量相关性状基因定位
LIU Dan, ZHAO De-hui, ZENG Jian-qi, Rabiu Sani SHAWAI, TONG Jing-yang, LI Ming, LI Fa-ji, ZHOU Shuo, HU Wen-li, XIA Xian-chun, TIAN Yu-bing, ZHU Qian, WANG Chun-ping, WANG De-sen, HE Zhong-hu, LIU Jin-dong, ZHANG Yong
Journal of Integrative Agriculture    2023, 22 (7): 1985-1999.   DOI: 10.1016/j.jia.2022.12.002
摘要301)      PDF    收藏

发掘稳定的数量性状位点(Quantitative trait lociQTL,并开发其紧密连锁分子标记进一步提高小麦产量的重要途径本研究以中麦578/济麦22重组自交系(Recombinant inbreed linesRIL)群体262个家系为材料,通过调查两年五个环境千粒重、粒长、粒宽、平均灌浆速率、穗粒数和株高共六个产量相关性状利用50K SNP芯片基因型分析数据,构建了含有1501bin标记的遗传连锁图谱,图谱总长度2384.95 cM。利用完备区间作图法,在1D2、2A9、2B6、2D、3A2、3B2、4A5、4D、5B8、5D2、7A7、7B3)和7D5染色体上共定位到53个产量相关QTL,可解释表型变异的2.7–25.5%其中23QTL可在3个以上环境定位到,表现稳定;QKl.caas-2A.1QKl.caas-7DQKw.caas-7DQGfr.caas-2B.1QGfr.caas-4AQGfr.caas-7AQPh.caas-2A.17QTL可能是新的位点。定位到的一因多效QTL共形成六个富集区段(R1–R6),分别包含2–6QTL,位于2A2B4A5B7A7D染色体TaSus2-2BWAPO-A1分别是位于2B7A染色体上一因多效QTL的候选基因。7D染色体上的QTL富集区段内含有4个稳定QTL,分别控制千粒重、粒长、粒宽和株高,利用与其紧密连锁的侧翼标记,开发了KASP标记,在自然群体中对其效应进行了验证。本研究结果为小麦高产育种和中麦578的进一步改良提供基因和分子标记

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3. Comprehensive characterization of yam tuber nutrition and medicinal quality of Dioscorea opposita and D. alata from different geographic groups in China
SHAN Nan, WANG Pu-tao, ZHU Qiang-long, SUN Jing-yu, ZHANG Hong-yu, LIU Xing-yue, CAO Tian-xu, CHEN Xin, HUANG Ying-jin, ZHOU Qing-hong
Journal of Integrative Agriculture    2020, 19 (11): 2839-2848.   DOI: 10.1016/S2095-3119(20)63270-1
摘要179)      PDF    收藏
China is an important domestication center of yams, and two main yam species of Dioscorea opposita and D. alata are commonly cultivated in China.  However, the differences of nutritional and medicinal characteristics between the two species and their subgroups remain unclear, which would greatly affect the resource conservation and commercial utilization of yams.  In this study, typical yam resources including the species of D. opposita (wild and cultivated Ruichang yam from southern China, and Tiegun yam from northern China) and two landraces of D. alata (Longyan yam and Anyuan yam from southern China) were selected as materials.  Nutritional traits and medicinal characteristics were determined and analyzed respectively.  The results showed that there was no significant differences in the content of most nutrients between D. opposita and D. alata, but most cultivated Ruichang yam of D. opposita showed higher levels of starch, soluble sugar, sucrose, and ascorbate in tuber than that in yam from D. alata.  Moreover, an UPLC-MS method was developed for identification and determination of medicinal characteristics in the two species.  The results showed that allantoin can be detected in all selected samples.  Cultivated Ruichang yam of D. opposita possessed the highest allantoin content among the tested materials, and was significantly different with that in Tiegun yam and D. alata. Dioscin was not detected in D. alata. Overall, there was little difference in nutritional composition between D. opposita and D. alata, but the medicinal quality of D. opposita was better than that of D. alata.  Due to the outstanding comprehensive quality, the local variety of cultivated Ruichang yam can be further developed and utilized.
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4. Effect of biochar on grain yield and leaf photosynthetic physiology of soybean cultivars with different phosphorus efficiencies
ZHU Qian, KONG Ling-jian, SHAN Yu-zi, YAO Xing-dong, ZHANG Hui-jun, XIE Fu-ti, AO Xue
Journal of Integrative Agriculture    2019, 18 (10): 2242-2254.   DOI: 10.1016/S2095-3119(19)62563-3
摘要142)      PDF    收藏
This study was conducted with two soybean cultivars, Liaodou 13 (L13, phosphorus (P)-efficient) and Tiefeng 3 (T3, P-inefficient), to investigate the effects of biochar on soybean yield and photosynthetic physiological parameters, at four biochar application rates (0, 1, 5, and 10%, w/w), and two fertilization treatments (0 and 150 kg ha–1).  Grain yield, plant biomass, P accumulation, leaf net photosynthetic rate (Pn), chlorophyll index (Chl), nitrogen balance index (NBI), sucrose phosphate synthase (SPS), and sucrose synthase (SS) activities, soluble sugar, sucrose and starch contents, and leaf area duration (LAD) were measured.  Biochar had positive effects on Pn, Chl, NBI, SPS, and SS activities, and leaf soluble sugar, sucrose, and starch contents of both genotypes, these effects increased with biochar application rate.  L13 benefited more efficiently from biochar than T3 did, as the grain yield of L13 significantly increased by 31.0 and 51.0%, at 5 and 10% biochar, respectively, while that of T3 increased by 40.4 at 10% biochar application rate, as compared with controls.  The combined application of biochar and fertilizer boosted the positive effects described, but no difference was found for grain yield in L13 among biochar application rates, while grain yield of T3 continually increased with biochar rate, among which, 1% biochar combined with 150 kg ha–1 fertilizer resulted in T3 yield increment of more than 23%, compared with the application of 150 kg ha–1 fertilizer alone.  Altogether, our results indicated that the application of biochar enhanced carbon assimilation in soybean, resulting in increased biomass accumulation and yield.  Differences in genotypic responses to biochar highlight the need to consider specific cultivars and biochar rate, when evaluating the potential responses of crops to biochar.
 
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5. Proton accumulation accelerated by heavy chemical nitrogen fertilization and its long-term impact on acidifying rate in a typical arable soil in the Huang-Huai-Hai Plain
HUANG Ping, ZHANG Jia-bao, XIN Xiu-li, ZHU An-ning, ZHANG Cong-zhi, MA Dong-hao, ZHU Qiang-gen, YANG Shan, WU Sheng-jun
Journal of Integrative Agriculture    2015, 14 (1): 148-157.   DOI: 10.1016/S2095-3119(14)60750-4
摘要1789)      PDF    收藏
Cropland productivity has been significantly impacted by soil acidification resulted from nitrogen (N) fertilization, especially as a result of excess ammoniacal N input. With decades’ intensive agricultural cultivation and heavy chemical N input in the Huang-Huai-Hai Plain, the impact extent of induced proton input on soil pH in the long term was not yet clear. In this study, acidification rates of different soil layers in the soil profile (0–120 cm) were calculated by pH buffer capacity (pHBC) and net input of protons due to chemical N incorporation. Topsoil (0–20 cm) pH changes of a long-term fertilization field (from 1989) were determined to validate the predicted values. The results showed that the acid and alkali buffer capacities varied significantly in the soil profile, averaged 692 and 39.8 mmolc kg–1 pH–1, respectively. A significant (P<0.05) correlation was found between pHBC and the content of calcium carbonate. Based on the commonly used application rate of urea (500 kg N ha–1 yr–1), the induced proton input in this region was predicted to be 16.1 kmol ha–1 yr–1, and nitrification and plant uptake of nitrate were the most important mechanisms for proton producing and consuming, respectively. The acidification rate of topsoil (0–20 cm) was estimated to be 0.01 unit pH yr–1 at the assumed N fertilization level. From 1989 to 2009, topsoil pH (0–20 cm) of the long-term fertilization field decreased from 8.65 to 8.50 for the PK (phosphorus, 150 kg P2O5 ha–1 yr–1; potassium, 300 kg K2O ha–1 yr–1; without N fertilization), and 8.30 for NPK (nitrogen, 300 kg N ha–1 yr–1; phosphorus, 150 kg P2O5 ha–1 yr–1; potassium, 300 kg K2O ha–1 yr–1), respectively. Therefore, the apparent soil acidification rate induced by N fertilization equaled to 0.01 unit pH yr–1, which can be a reference to the estimated result, considering the effect of atmospheric N deposition, crop biomass, field management and plant uptake of other nutrients and cations. As protons could be consumed by some field practices, such as stubble return and coupled water and nutrient management, soil pH would maintain relatively stable if proper management practices can be adopted in this region.
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6. Effect of Phosphorus Fertilization to P Uptake and Dry Matter Accumulation in Soybean with Different P Efficiencies
AO Xue, GUO Xiao-hong, ZHU Qian, ZHANG Hui-jun, WANG Hai-ying, MA Zhao-hui, HAN, Xiao-ri, ZHAO Ming-hui , XIE Fu-ti
Journal of Integrative Agriculture    2014, 13 (2): 326-334.   DOI: 10.1016/S2095-3119(13)60390-1
摘要2376)      PDF    收藏
Phosphorus (P) is an essential element for plant growth and yield. Improving phosphorus use efficiency of crops could potentially reduce the application of chemical fertilizer and alleviate environmental damage. Soybean (Glycine max (L.) Merr.) is sensitive to phosphorus (P) in the whole life history. Soybean cultivars with different P efficiencies were used to study P uptake and dry matter accumulation under different P levels. Under low P conditions, the P contents of leaf in high P efficiency cultivars were greater than those in low P efficiency cultivars at the branching stage. The P accumulation in stems of high P efficiency cultivars and in leaves of low P efficiency cultivars increased with increasing P concentration at the branching stage. At the late podding stage, the P accumulation of seeds in high and low P efficiency cultivars were 22.5 and 26.0%, respectively; and at the mature stage were 69.8 and 74.2%, respectively. In average, the P accumulation in whole plants and each organ was improved by 24.4% in high P efficiency cultivars compared to low P efficiency cultivars. The biomass between high and low P efficiency cultivars were the same under extended P condition, while a significant difference was observed at late pod filling stage. At the pod setting stage, the biomass of high P efficiency cultivars were significant greater (17.4%) than those of low P efficiency cultivars under high P condition. Meanwhile, under optimum growth conditions, there was little difference of biomass between the two types of cultivars, however, the P agronomic efficiency and P harvest index were significant higher in high P efficiency cultivars than those in low P efficiency cultivars.
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7. Study on Plant Morphological Traits and Production Characteristics of Super High-Yielding Soybean
AO Xue, ZHAO Ming-hui, ZHU Qian, LI Jie, ZHANG Hui-jun, WANG Hai-ying, YU Cui-mei, LI Chunhong, YAO Xing-dong, XIE Fu-ti , HAN Xiao-ri
Journal of Integrative Agriculture    2013, 12 (7): 1173-1182.   DOI: 10.1016/S2095-3119(13)60444-X
摘要1486)      PDF    收藏
Super high-yielding soybean cultivar Liaodou 14, soybean cultivars from Ohio in the United States, and the common soybean cultivars from Liaoning Province, China, with similar geographic latitudes and identical pod-bearing habits were used as the study materials for a comparison of morphological traits and production characteristics to provide a theoretical basis for the breeding of improved super high-yielding soybean cultivars. Using a randomized block design, different soybean cultivars from the same latitude were compared under conventional and unconventional treatments for their production characteristics, including morphological traits, leaf area index (LAI), net photosynthesis rate, and dry matter accumulation. The specific characteristics of the super high-yielding soybean cultivar Liaodou 14 were analyzed. The results showed that the plant height of Liaodou 14 was significantly lower than that of the common cultivars from Liaoning, whereas the number of its main-stem nodes was higher than that of the cultivars from Ohio or Liaoning. A high pod density was observed in Liaodou 14 under conventional treatments. Under both conventional and unconventional treatments, the branch number of Liaodou 14 was markedly higher than that of the common cultivars from Liaoning, and its branch length and leaf inclination angle were significantly higher than those of common cultivars from Liaoning or Ohio. Only small changes in the leaf inclination angle were observed in Liaodou 14 treated with conventional or unconventional methods. Under each treatment, Liaodou 14 exhibited the lowest amplitude of reduction in SPAD values and net photosynthesis rates from the grain-filling to ripening stages; the cultivars from Ohio and the common cultivars from Liaoning exhibited more significant reductions. Liaodou 14 reached its peak LAI later than the other cultivars but maintained its LAI at a higher level for a longer duration. Under both conventional and unconventional treatments, Liaodou 14 produced a higher yield than the other two cultivars, with significant differences from the Ohio cultivars. In summary, super high-yielding soybean cultivars have several main features: suitable plant height, high pod density, good leaf structure with strong functionality, and slow leaf senescence at the late reproductive stage, which is conducive to the accumulation of dry matter and improved yield.
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