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1. 基于SSR标记的甘薯遗传多样性和群体结构分析
LIU Cheng, ZHAO Ning, JIANG Zhi-cheng, ZHANG Huan, ZHAI Hong, HE Shao-zhen, GAO Shao-pei, LIU Qing-chang
Journal of Integrative Agriculture    2023, 22 (11): 3408-3415.   DOI: 10.1016/j.jia.2023.02.004
摘要196)      PDF    收藏

甘薯是世界上重要的粮食作物。大规模评价甘薯种质资源的遗传多样性,对明确甘薯种质资源间的遗传关系、有效利用这些种质资源对甘薯进行遗传改良是非常重要的。本研究使用30对多态性好的SSR引物,分析了617份甘薯种质资源的遗传多样性。这些甘薯种质资源包括中国的376个地方品种和162个育成品种以及来自其他11个国家的79个引进品种。根据群体结构分析这些甘薯种质资源分为3个群,即:群体1、群体2、群体3,它们分别含有228份、136份和253份种质资源。通过聚类分析和主成分分析(PCoA)也获得了一致的结果。在这3个群中,群体2显示出最高的遗传多样性水平,该群主要分布在低纬度地区。中国南方的甘薯种质资源具有最高的遗传多样性水平,这一结果支持甘薯最早由福建和广东传入中国的假说。分子方差分析(AMOVA)结果显示,不同群间存在显著的遗传分化,但是不同来源地和不同种质类型之间的遗传分化水平较低。这些结果为在甘薯育种中更好地利用这些种质资源提供了有价值的信息。

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2. JIA-2021-0269 IbGGPS基因显著提高转基因甘薯的类胡萝卜素含量
LI Rui-jie, ZHAI Hong, HE Shao-zhen, ZHANG Huan, ZHAO Ning, LIU Qing-chang
Journal of Integrative Agriculture    2022, 21 (9): 2538-2546.   DOI: 10.1016/j.jia.2022.07.029
摘要234)      PDF    收藏

牻牛儿基牻牛儿基焦磷酸合酶(GGPS)在类胡萝卜素的生物合成中起着重要作用。在之前的研究中,我们从一个高类胡萝卜素含量的甘薯品系农大辐14中克隆得到IbGGPS基因, 但其在甘薯类胡萝卜素生物合成中的作用及其调控机制尚未研究。在本研究中,我们将IbGGPS基因导入甘薯品种栗子香中,发现该基因显著增加转基因甘薯块根中的β-胡萝卜素、β-隐黄质、玉米黄质和叶黄素含量。进一步研究表明,IbGGPS基因的过表达使糖酵解途径、MEP途径和类胡萝卜素途径相关基因的表达系统上调,从而增加了转基因植株的类胡萝卜素含量。这些结果表明,IbGGPS基因具有提高甘薯和其他植物类胡萝卜素含量的利用价值


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3. Transcriptome profiling reveals insights into the molecular mechanism of drought tolerance in sweetpotato
ZHU Hong, ZHOU Yuan-yuan, ZHAI Hong, HE Shao-zhen, ZHAO Ning, LIU Qing-chang
Journal of Integrative Agriculture    2019, 18 (1): 9-24.   DOI: 10.1016/S2095-3119(18)61934-3
摘要282)      PDF    收藏
Sweetpotato, Ipomoea batatas (L.) Lam., is a globally important food crop and usually grown on arid- and semi-arid lands.  Therefore, investigating the molecular mechanism of drought tolerance will provide important information for the improvement of drought tolerance in this crop.  In this study, transcriptome analysis of the drought-tolerant sweetpotato line Xushu 55-2 was conducted on Illumina HiSeq 2500 platform.  A total of 86.69 Gb clean data were generated and assembled into 2 671 693 contigs, 222 073 transcripts, and 73 636 unigenes.  In total, 11 359 differentially expressed genes (DEGs) were identified after PEG6000 treatment, in which 7 666 were up-regulated and 3 693 were down-regulated.  Of the 11 359 DEGs, 10 192 DEGs were annotated in at least one database, and the remaining 1 167 DEGs were unknown.  Abscisic acid (ABA), ethylene (ETH), and jasmonic acid (JA) signalling pathways play a major role in drought tolerance of sweetpotato.  Drought-inducible transcription factors were identified, some of which have been reported to be associated with drought tolerance and others are unknown in plants.  In addition, 7 643 SSRs were detected.  This study not only reveals insights into the molecular mechanism of drought tolerance in sweetpotato but also provides the candidate genes involved in drought tolerance of this crop.
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4. Overexpression of IbSnRK1 enhances nitrogen uptake and carbon assimilation in transgenic sweetpotato
REN Zhi-tong, ZHAO Hong-yuan, HE Shao-zhen, ZHAI Hong, ZHAO Ning, LIU Qing-chang
Journal of Integrative Agriculture    2018, 17 (2): 296-305.   DOI: 10.1016/S2095-3119(16)61611-8
摘要1094)      PDF    收藏
Nitrogen is an important nutrient for plant development.  Nitrogen and carbon metabolisms are tightly linked to physiological functions in plants.  In this study, we found that the IbSnRK1 gene was induced by Ca(NO3)2.  Its overexpression enhanced nitrogen uptake and carbon assimilation in transgenic sweetpotato.  After Ca(15NO3)2 treatment, the 15N atom excess, 15N and total N content and nitrogen uptake efficiency (NUE) were significantly increased in the roots, stems, and leaves of transgenic plants compared with wild type (WT) and empty vector control (VC).  After Ca(NO3)2 treatment, the increased nitrate N content, nitrate reductase (NR) activity, free amino acid content, and soluble protein content were found in the roots or leaves of transgenic plants.  The photosynthesis and carbon assimilation were enhanced.  These results suggest that the IbSnRK1 gene play a important role in nitrogen uptake and carbon assimilation of sweetpotato.  This gene has the potential to be used for improving the yield and quality of sweetpotato.
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5. SSR fingerprinting of 203 sweetpotato (Ipomoea batatas (L.) Lam.) varieties
MENG Yu-sha, ZHAO Ning, LI Hui, ZHAI Hong, HE Shao-zhen, LIU Qing-chang
Journal of Integrative Agriculture    2018, 17 (01): 86-93.   DOI: 10.1016/S2095-3119(17)61687-3
摘要646)      PDF    收藏
Simple sequence repeat (SSR) markers have been shown to be a powerful tool for varieties identification in plants.  However, SSR fingerprinting of sweetpotato varieties has been a little reported.  In this study, a total of 1 294 SSR primer pairs, including 1 215 genomic-SSR and 79 expressed sequence tag (EST)-SSR primer pairs, were screened with sweetpotato varieties Zhengshu 20 and Luoxushu 8 and their 2 F1 individuals randomly sampled, and 273 and 38 of them generated polymorphic bands, respectively.  Four genomic-SSR and 3 EST-SSR primer pairs, which showed good polymorphism, were selected to amplify 203 sweetpotato varieties and gave a total of 172 bands, 85 (49.42%) of which were polymorphic.  All of the 203 sweetpotato varieties showed unique fingerprint patterns, indicating the utility of SSR markers in variety identification of this crop.  Polymorphism information content (PIC) ranged from 0.5824 to 0.9322 with an average of 0.8176.  SSR-based genetic distances varied from 0.0118 to 0.6353 with an average of 0.3100 among these varieties.  Thus, these sweetpotato varieties exhibited high levels of genetic similarity and had distinct fingerprint profiles.  The SSR fingerprints of the 203 sweetpotato varieties have been successfully constructed.  The highly polymorphic SSR primer pairs developed in this study have the potential to be used as core primer pairs for variety identification, genetic diversity assessment and linkage map construction in sweetpotato and other plants.
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6. Identification of QTLs for Starch Content in Sweetpotato (Ipomoea batatas (L.) Lam.)
YU Xiao-xia, ZHAO Ning, LI Hui, JIE Qin, ZHAI Hong, HE Shao-zhen, LI Qiang , LIU Qing-chang
Journal of Integrative Agriculture    2014, 13 (2): 310-315.   DOI: 10.1016/S2095-3119(13)60357-3
摘要1701)      PDF    收藏
Sweetpotato (Ipomoea batatas (L.) Lam.) breeding is challenging due to its genetic complexity. In the present study, interval mapping (IM) and multiple quantitative trait locus (QTL) model (MQM) analysis were used to identify QTLs for starch content with a mapping population consisting of 202 F1 individuals of a cross between Xushu 18, a cultivar susceptible to stem nematodes, with high yield and moderate starch, and Xu 781, which is resistant to stem nematodes, has low yield and high starch content. Six QTLs for starch content were mapped on six linkage groups of the Xu 781 map, explaining 9.1-38.8% of the variation. Especially, one of them, DMFN_4, accounted for 38.8% of starch content variation, which is the QTL that explains the highest phenotypic variation detected to date in sweetpotato. All of the six QTLs had a positive effect on the variation of the starch content, which indicated the inheritance derived from the parent Xu 781. Two QTLs for starch content were detected on two linkage groups of the Xushu 18 map, explaining 14.3 and 16.1% of the variation, respectively. They had a negative effect on the variation, indicating the inheritance derived from Xu 781. Seven of eight QTLs were co-localized with a single marker. This is the first report on the development of QTLs co-localized with a single marker in sweetpotato. These QTLs and their co-localized markers may be used in marker-assisted breeding for the starch content of sweetpotato.
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7. Pharmacokinetics of Cyadox and Its Major Metabolites in Swine After Intravenous and Oral Administration
ZHAO Ning, WANG Lin, LU Xiao-xiong, JIA Hui-qin, FANG Bing-hu, ZENG Zhen-ling , DING Huanzhong
Journal of Integrative Agriculture    2013, 12 (3): 495-501.   DOI: 10.1016/S2095-3119(13)60250-6
摘要1434)      PDF    收藏
Pharmacokinetics of cyadox (CYX) and its major metabolites in healthy swine was investigated in this paper. 1,4- Bisdesoxycyadox (BDCYX), cyadox-1-monoxide (CYX-1-O) and quinoxaline-2-carboxylic acid (QCA), three main metabolites of cyadox, were synthesized by College of Science, China Agricultural University. Cyadox (CYX) was administered to 8 healthy cross-bread swine intravenously (i.v.) and orally (p.o.) at a dosage of 1 mg kg-1 body weight and 40 mg kg-1 body weight respectively in a randomized crossover design test with 2-wk washout period. A sensitive high-performance liquid chromatography-tandem mass spectrometry (LC-ESI-MS/MS) method was developed for the determination of cyadox and its major metabolites in plasma. CYX and its major metabolites BDCYX, and CYX-1-O can be detected after intravenous administration of cyadox while CYX and its metabolites BDCYX, CYX-1-O and QCA can be detected after oral administration of CYX. Plasma concentration vs. time profiles of CYX and its major metabolites were analyzed by non-compartmental pharmacokinetic method. Following i.v. administration, the areas under the plasma concentration-time curve (AUC0- ) were (0.38±0.03) μg mL-1 h (CYX), (0.018±0.002) μg mL-1 h (BDCYX) and (0.17±0.02) μg mL-1 h (CYX-1-O), respectively. The terminal elimination half-lives (t1/2lz) were determined to be (0.93±0.07) h (CYX), (1.45±0.04) h (BDCYX), and (0.92±0.04) h (CYX-1-O), respectively. Steady-state distribution volume (Vss) of (2.14±0.11) L kg-1 and total body clearance (CL) of (2.84±0.19) L h-1 kg-1 were determined for CYX after i.v. dosing. The bioavailability (F) of CYX was 2.85% for oral administration. After single i.v. administration, peak plasma concentrations (Cmax) of (1.08±0.06) μg mL-1 (CYX), (0.0068± 0.0004) μg mL-1 (BDCYX) and (0.25±0.03) μg mL-1 (CYX-1-O) were observed at Tmax of 0.033 h (CYX), 1 h (BDCYX) and 0.033 h (CYX-1-O), respectively. The main pharmacokinetic parameters after p.o. administration were as follows: AUC0- were (0.42±0.04) μg mL-1 h (CYX), (1.38±0.14) μg mL-1 h (BDCYX), (0.59±0.02) μg mL-1 h (CYX-1-O) and (1.48±0.09) μg mL-1 h (QCA), respectively. t1/2lz were (4.77±0.33) h (CYX), (5.77±0.56) h (BDCYX), (4.12±0.28) h (CYX-1-O), and (8.51±0.39) h (QCA), respectively. After p.o. administration, Cmaxs of (0.033±0.002) μg mL-1 (CYX), (0.22±0.03) μg mL-1 (BDCYX), (0.089±0.005) μg mL-1 (CYX-1-O), and (0.17± 0.01) μg mL-1 (QCA) were observed at Tmax of (7.38±0.33) h (CYX), (7.25±0.31) h (BDCYX), (7.38±0.33) h (CYX-1-O), and (7.25±0.31) h (QCA), respectively. The results showed that CYX was slowly absorbed after oral administration and most of CYX was transformed to its metabolites in swine. The area under plasma concentration-time curve (AUC0- )of metabolites were higher than that of CYX after p.o. administration, and the elimination half-lives (t1/2lz) of QCA were longer than those of CYX, CYX-1-O, and BDCYX after oral administration.
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8. Development of SRAP Markers Linked to a Gene for Stem Nematode Resistance in Sweetpotato, Ipomoea batatas (L.) Lam.
ZHAO Ning, ZHAI Hong, YU Xiao-xia, LIU Zhe-sheng, HE Shao-zhen, LI Qiang, MA Dai-fu , LIU Qing-chang
Journal of Integrative Agriculture    2013, 12 (3): 414-419.   DOI: 10.1016/S2095-3119(13)60241-5
摘要1554)      PDF    收藏
Sequence-related amplification polymorphism (SRAP) markers closely linked to stem nematode resistance gene were developed in sweetpotato, Ipomoea batatas (L.) Lam. Using bulked segregant analysis (BSA), 200 SRAP primer combinations were screened with the resistant and susceptible bulked DNA from the 196 progenies of an F1 single-cross population of resistant parent Xu 781×susceptible parent Xushu 18, 77 of them showed polymorphic bands between resistant and susceptible DNA. Primer combinations detecting polymorphism between the two bulks were used to screen both parents and 10 individuals from each of the bulks. The results showed that primer combination A9B4 produced 3 specific bands in the resistant plants but not in the susceptible plants, suggesting that the markers, named Nsp1, Nsp2 and Nsp3, respectively, linked to a gene for stem nematode resistance. Primer combination A3B6 also produced a SRAP marker named Nsp4 linking to the resistance gene. Amplified analysis of the 196 F1 individuals indicated that the genetic distance between these markers and the resistance gene was 4.7, 4.7, 6.3, and 9.6 cM, respectively.
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9. AFLP Fingerprinting and Genetic Diversity of Main Sweetpotato Varieties in China
LIU De-gao, ZHAO Ning, ZHAI Hong, YU Xiao-xia, JIE Qin, WANG Lian-jun, HE Shao-zhen, LIU Qing-chang
Journal of Integrative Agriculture    2012, 12 (9): 1424-1433.   DOI: 10.1016/S1671-2927(00)8674
摘要1710)      PDF    收藏
AFLP fingerprinting of the 98 main sweetpotato varieties planted in China has been constructed. Using 17 AFLP primer combinations which were selected from 1 208 primer combinations and generated the most amounts of polymorphic bands, AFLP analysis of the 98 main sweetpotato varieties gave a total of 410 clear polymorphic bands with an average of 24.12 polymorphic bands per primer combination. Each one of the 98 sweetpotato varieties could be clearly distinguished by EcoR I-cta/Mse I-ggc primer combination which generated the most polymorphic bands. AFLP-based genetic distance ranged from 0.0546 to 0.5709 with an average of 0.3799. The dendrogram based on AFLP markers indicated that sweetpotato varieties coming from the same regions or having same parents were clustered in the same groups. Analysis of molecular variance (AMOVA) revealed greater variations within regions (94.08%) than among regions (5.92%). Thus, the genetic variations mainly existed within regions, while the variations among regions were very low in the tested sweetpotato varieties. Significant genetic variations existed between “Northern” and “Southern” sweetpotato varieties when Yangtze River was used as the dividing line.
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