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1.
Understanding the metabolism of
Mycoplasma mycoides
subsp.
capri
in vitro
by a transcriptomic analysis
WANG Xiao-hui, WANG Yan-fang, HUANG Hai-bi, BAI Fan, SHI Xiao-na, MA Chang-jiao, GAO Yuan, ZHANG Jian-hua, ZHANG Wen-guang, HAO Yong-qing
Journal of Integrative Agriculture 2018, 17 (
2
): 428-435. DOI:
10.1016/S2095-3119(17)61747-7
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797
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It is generally known that the culture for mycoplasma is time-consuming and a variety of nutrients are needed in the culture medium. This brings a lot of difficulties to mycoplasma research and application, including
Mycoplasma mycoides
subsp.
capri
(Mmc). Furthermore, little research on the characteristics of Mmc metabolism has been reported. In this study, Mmc PG3 strain cultures were investigated for dynamic gene expression. Culture samples were harvested during logarithmic phase (PG3-1), stationary phase (PG3-2), decline phase (PG3-3) and late decline phase (PG3-4). Twelve RNA samples (three replicates for each of the four growth stages considered) from these cultures were collected and sequenced. Paired comparison between consecutive growth phases in the four growth stages showed 45 significant differentially expressed genes (
P
<0.01) were linked to PG3 metabolism. The enzymes these genes coded were mainly involved in ATP synthase, pyrimidine metabolism, nicotinate and nicotinamide metabolism, arginine and proline metabolism. Among these, cytidylate kinase, fructose 1,6-bisphosphate aldolases Class II, nicotinate-nucleotide adenylyltransferase and dihydrolipoamide dehydrogenase play a key role in Mmc metabolism. These results provide a baseline to build our understanding of the metabolic pathway of Mmc.
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2.
Complete Genome Sequence of Mycoplasma ovipneumoniae Strain NM2010, Which Was Isolated from a Sheep in China
WANG Xiao-hui, HUANG Hai-bi, CHENG Chen, WANG Ren-chao, ZHENG Jia-qi, HAO Yongqing, ZHANG Wen-guang
Journal of Integrative Agriculture 2014, 13 (
11
): 2562-2563. DOI:
10.1016/S2095-3119(14)60825-X
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Mycoplasma ovipneumoniae, a kind of mycoplasma bacteria, commonly infects the respiratory tract causing respiratory disease in sheep and goats worldwide. Here, the complete genome sequence of M. ovipneumoniae strain NM2010 isolated from a sheep in China was reported for the first time.
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3.
Development of Genome-Wide Scan for Selection Signature in Farm Animals
ZHANG Wen-guang
Journal of Integrative Agriculture 2013, 12 (
8
): 1461-1470. DOI:
10.1016/S2095-3119(13)60375-5
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1742
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Identifying targets of positive selection in farm animals has, until recently, been frustratingly slow, relying on the analysis of individual candidate genes. Genomics, however, has provided the necessary resources to systematically interrogate the entire genome for signatures of selection. This review described important recent results derived from the application of genome-wide scan to the study of genetic changes in farm animals. These included findings of regions of the genome that showed breed differentiation, evidence of selective sweeps within individual genomes and signatures of demographic events. Particular attention is focused on the study of the implications for domestication. To date, sixteen genome-wide scans for recent or ongoing positive selection have been performed in farm animals. A key challenge is to begin synthesizing these newly constructed maps of selection into a coherent narrative of animal breed evolutionary history and derive a deeper mechanistic understanding of how animal populations improve or evolve. The major insights from the surveyed studies are highlighted and directions for future study are suggested.
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4.
Hoxc13/β-catenin Correlation with Hair Follicle Activity in Cashmere Goat
WU Jiang-hong, ZHANG Yan-jun, ZHANG Jia-xin, CHANG Zi-li, LI Jin-quan, YAN Zu-wei, Husile , ZHANG Wen-guang
Journal of Integrative Agriculture 2012, 12 (
7
): 1159-1166. DOI:
10.1016/S1671-2927(00)8642
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Seasonal hair follicle activity and fibre growth in some Cashmere-bearing goats (Caprus hircus) is a cyclic process that is well characterized morphologically but understood incompletely at the molecular level. As an initial step in discovering regulators in hair-follicle activity and cycling, we used qPCR to investigate 19 genes expression in Cashmere goat side skin from 12 mon. Many of these genes may be associated with the hair follicle development-relevant genes (HFDRGs) in the literature. Here we show that Hoxc13/β-catenin gene associated with the follicle activity. In addition, Hoxc13 was found to be expressed with an drastic increase between July and November for melatonin treatments. To further investigate the role of Hoxc13 on HFDRGs, fibroblasts and keratinocytes from Cashmere goat skin were transfected with p-ECFPHoxc13. The result suggested that overexpression of Hoxc13 gene decreased HFDRGs with negative role for hair follicle development and increase HFDRGs with positive role for hair follicle development in vitro. These findings provide data on the Hoxc13 expression profile of normal Cashmere goat skin and Cashmere goat skin with melatonin treatment, and demonstrate hair-follicle-activity dependent regulation of Hoxc13 expression.
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