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1.
鸡干扰素调节因子7剪切异构体负调控干扰素β的表达
MA Yu-chen, CHEN Hua-yuan, GAO Shen-yan, ZHANG Xiao-zhan, LI Yong-tao, YANG Xia, ZHAO Jun, WANG Zeng
Journal of Integrative Agriculture 2023, 22 (
7
): 2213-2220. DOI:
10.1016/j.jia.2022.12.015
摘要
(
136
)
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型干扰素(
t
ype I interferon, IFN-I)是保护机体抵御病原微生物感染的重要防线。干扰素调节因子(IFN regulatory factor
,
I
RF
)在
D
NA
及
R
NA病毒感染鸡后刺激机体产生IFN-I
、建立抗感染免疫的过程中发挥重要作用。在哺乳动物体内,主要依赖
I
RF3
和
I
RF7
共同调节
I
FN-I
的表达。但是,鸡先天缺乏
I
RF3
,主要依赖
I
RF7
调控
I
FN-I
的表达。目前,已在哺乳动物体内鉴定出
4
种
I
RF7
剪切异构体,但鸡
I
RF7
(
chicken
IRF7
,
ch
IRF7
)是否存在类似的剪切变异及其功能均不清楚。本研究在构建
ch
IRF7
克隆过程中,鉴定出一个新的剪切异构体,命名为
ch
IRF7
-iso
。序列分析发现,与
ch
IRF7
相比,
ch
IRF7
-iso
包含完整的
N
端
D
NA
-
结合结构域,但其
C
端存在
1
4
个差异氨基酸。随后,我们评估了
ch
IRF7
和
ch
IRF7
-iso
对
I
FN-β
启动子的活化能力,并以新城疫病毒弱毒疫苗株
La
S
ota
和高致病性血清
4
型禽腺病毒(
Fowl
adenovirus
serotype 4, FAd
V
-4
)作为研究对象,评估了
ch
IRF7
-iso
对这两株病毒在鸡肝细胞(
leghorn male hepatocellular
,
LMH
)中复制能力的影响。结果发现,
ch
IRF7
可以促进
I
FN-β
的高水平表达,而
ch
IRF7
-iso
对
I
FN-β
启动子活性及表达量无明显影响。此外,
La
S
ota
和
FAd
V
-4
在过表达
ch
IRF7
的
L
MH
细胞中复制水平较低,而在
ch
IRF7
-iso
转染组细胞中增殖较好。这些结果均说明,本研究新鉴定出一种
ch
IRF7
剪切异构体,且
ch
IRF7
-iso
可能通过负调控
I
FN-β通路而影响病毒的增殖。该研究为丰富鸡天然免疫应答奠定了基础。
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2.
Transcriptomic analyses reveal new genes and networks response to H5N1 influenza viruses in duck (
Anas platyrhynchos
)
HUANG Yin-hua, FENG Hua-peng, HUANG Li-ren, YI Kang, RONG En-guang, CHEN Xiao-yun, LI Jian-wen, WANG Zeng, ZHU Peng-yang, LIU Xiao-juan, WANG Xiao-xue, HU Jia-xiang, LIU Xin, CHEN Hua-lan, WANG Jun...
Journal of Integrative Agriculture 2019, 18 (
7
): 1460-1472. DOI:
10.1016/S2095-3119(19)62646-8
摘要
(
205
)
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H5N1 influenza represents one of the great challenges to public health. Some H5N1 viruses (i.e., A/goose/Hubei/65/05, GS/65) are weakly pathogenic, while the others (i.e., A/duck/Hubei/49/05, DK/49) are highly pathogenic to their natural hosts. Here, we performed brain and spleen transcriptomic analyses of control ducks and ones infected by the DK/49 or the GS/65 H5N1 virus. We demonstrated that, compared to the GS/65 virus, the DK/49 virus infection changed more numerous immune genes’ expression and caused continuous increasing of immune pathways (i.e., RIG-I and MDA5) in ducks. We found that both H5N1 virus strains might escape or subvert host immune response through affecting alternative translation of immune genes, while the DK/49 virus seemed to induce alternative translation of more immune genes than the GS/65 virus. We also identified five co-expressional modules associated with H5N1 virus replication through the weight correlation network analysis (WGCNA). Moreover, we first demonstrated that the duck
BCL2L15
and
DCSTAMP
in one of these five modules inhibited both the highly pathogenic and weakly pathogenic H5N1 virus replication efficiently. These analyses, in combination with our comprehensive transcriptomic data, provided global view of the molecular architecture for the interaction between host and H5N1 viruses.
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3.
Identification and Gene Mapping of a multi-floret spikelet 1 (mfs1) Mutant Associated with Spikelet Development in Rice
REN De-yong*, LI Yun-feng*, WANG Zeng, XU Fang-fang, GUO Shuang, ZHAO Fang-ming, SANG Xianchun, LING ing-hua, HE Guang-hua
Journal of Integrative Agriculture 2012, 12 (
10
): 1574-1579. DOI:
10.1016/S1671-2927(00)8690
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1647
)
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In this study, a rice spikelet mutant, multi-floret spikelet 1 (mfs1), which was derived from ethylmethane sulfonate (EMS)- treated Jinhui 10 (Oryza sativa L. ssp. indica) exhibited pleiotropic defects in spikelet development. The mfs1 spikelet displayed degenerated the empty glume, elongated the rachilla, the extra lemma-like organ and degraded the palea. Additionally, mfs1 flowers produced varied numbers of inner floral organs. The genetic analysis revealed that the mutational trait was controlled by a single recessive gene. With 401 recessive individuals from the F2 segregation population, the MFS1 gene was finally mapped on chromosome 5, an approximate 350 kb region. The present study will be useful for cloning and functional analysis of MFS1, which would facilitate understanding of the molecular mechanism involved in spikelet development in rice.
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4.
Cloning and Characterization of WOX4 Gene from Vitis vinifera L. Involved in Stem Cell Regulation
DAI Ru, JIN Hai-peng, WANG Zeng, Avihai Perl, XU Hai-ying, ZHANG Wen, CHEN Shang-wu, MA Hui-qin
Journal of Integrative Agriculture 2011, 10 (
12
): 1861-1871. DOI:
10.1016/S1671-2927(11)60186-7
摘要
(
1958
)
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Wuschel-related homeobox (WOX) genes play essential, specific, and sometimes redundant roles in plant embryo development, shoot and root meristem maintenance, and plant development. Though much information was quickly gained with members of the WOX gene family of Arabidopsis, monocotyledonous crops, and gymnospermous conifers, little is known about perennial woody plants. In this study, we isolated the first WOX gene family member from grape (Vitis vinifera L. cv. Cabernet Sauvignon), and named it VvWOX4 based on its characteristic domains and phylogenetic analysis. The identity of VvWOX4 was validated by MALDI-TOF MS and Western blot with polyclonal antibody against Arabidopsis thaliana Wuschel. Functional analysis showed that VvWOX4 markedly increased shoot primordia structures when overexpressed under CaMV 35S promoter in tobacco. A different expression pattern was found for VvVOX4 compared with AtWUCHEL and its expression was detected in unique organs of grapevines. Besides the expression in the vegetative shoot apical meristem (SAM) of grape shoot tips, VvWOX4 is expressed in dormant winter buds, inflorescence, young leaves, and tendril tips, but not in root tips. In young leaves, the expression of VvWOX4 is strongly upregulated by wounding, and also by plant growth regulators such as 2 mg L-1 2,4-D, 1 mg L-1 NAA and 1 mg L-1 BAP treatments, while downregulation was monitored by 1 mg L-1 IBA treatment, and there was no response to 0.5 mg L-1 GA3 treatment. Together, our results revealed the first member of grape WOX gene family and indicated different roles and regulation of VvWOX4 in the perennial woody crop grapevine.
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