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1. JIA-2021-0547 饲粮苏氨酸缺乏对北京鸭脂质组织脂质代谢相关基因表达的影响与基因型有关
JIANG Yong, MA Xin-yan, XIE Ming, ZHOU Zheng-kui, TANG Jing, CHANG Guo-bin, CHEN Guo-hong, HOU Shui-sheng
Journal of Integrative Agriculture    2022, 21 (9): 2691-2699.   DOI: 10.1016/j.jia.2022.07.011
摘要155)      PDF    收藏

本试验通过高通量测序技术测定脂肪型和瘦肉型北京鸭肝脏、皮脂和腹脂基因表达谱,以比较脂肪型和瘦肉型北京鸭脂质代谢差异表达基因。分别饲喂脂肪型和瘦肉型北京鸭苏氨酸缺乏或者充足的饲粮21天(15-35日龄)。试验结果表明,饲粮苏氨酸缺乏分别影响瘦肉型北京鸭肝脏、皮脂和腹脂中187、52和50个基因表达,其中分别有12、9和5个基因与脂质代谢有关。饲粮苏氨酸缺乏分别影响脂肪型北京鸭肝脏、皮脂和腹脂中27、6和3个基因表达,未发现与脂质代谢相关基因。KEGG分析表明瘦肉型北京鸭肝脏差异表达基因主要富集在脂质代谢通路(油酸代谢、甘油磷脂代谢和花生四烯酸代谢)和氨基酸代谢通路中(氨基酸合成、苯丙氨酸代谢、β-丙氨酸代谢、甘氨酸-丝氨酸-苏氨酸代谢)。脂肪型北京鸭脂肪组织中差异表达基因没有富集到脂质和氨基酸代谢通路中。苏氨酸缺乏增加瘦肉型北京鸭肝脏中苹果酸脱氢酶3、酰基辅酶a合成酶短链家族成员2和皮脂中脂肪酶M的表达。综上所述,饲粮苏氨酸缺乏对北京鸭脂质组织脂肪代谢相关基因表达的影响与北京鸭基因型有关。该研究发现表明北京鸭的遗传选育改变了其基因背景,为充分理解苏氨酸对不同品系北京鸭脂质代谢作用提供了一个新的视角,也为苏氨酸在北京鸭饲粮中合理添加提供了理论基础。


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2. Identification of eight Berberis species from the Yunnan-Guizhou plateau as aecial hosts for Puccinia striiformis f. sp. tritici, the wheat stripe rust pathogen
LI Si-nan, CHEN Wen, MA Xin-yao, TIAN Xia-xia, LIU Yao, HUANG Li-li, KANG Zhen-sheng, ZHAO Jie
Journal of Integrative Agriculture    2021, 20 (6): 1563-1569.   DOI: 10.1016/S2095-3119(20)63327-5
摘要145)      PDF    收藏

条形柄锈菌小麦专化型侵染小麦引起条锈病。小麦条锈菌是转主寄生菌,以小麦作为主要寄主完成夏孢子与冬孢子阶段,以小檗作为主要转主寄主完成性孢子与锈孢子阶段。目前,研究报道40余种小檗可作为小麦条锈菌的转主寄,其中大多数是中国小檗种类。然而,有关西南地区云贵高原小檗种类和地理分布知之甚少。云贵高原是中国小麦条锈菌进化相对独立的重要流行区,小麦条锈病在该地区可完成周年循环。本研究中,本文作者对云贵地区的小檗进行了调查,并通过人工接种鉴定了8种小檗可作为小麦条锈菌转主寄主,包括豪猪刺、永思小檗、巴东小檗、金花小檗、古宗金花小檗、滇西北小檗、鳞叶小檗、粉叶小檗,这是首次报道这些小檗种类可作为小麦条锈菌转主寄主。


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3. Bacterial diversity and community composition changes in paddy soils that have different parent materials and fertility levels
MA Xin-ling, LIU Jia, CHEN Xiao-fen, LI Wei-tao, JIANG Chun-yu, WU Meng, LIU Ming, LI Zhong-pei
Journal of Integrative Agriculture    2021, 20 (10): 2797-2806.   DOI: 10.1016/S2095-3119(20)63364-0
摘要188)      PDF    收藏

一方面,中国亚热带红壤区水稻土母质和肥力水平多变;另一方面,细菌多样性和群落组成在土壤生态系统过程和功能中发挥关键作用。但是水稻土的母质和肥力对细菌多样性和群落组成的影响如何仍不清楚,不同母质和肥力水平条件下驱动水稻土细菌多样性、群落组成和特异微生物种群变化的关键因素尚不明确。因此,本研究采集亚热带红壤区具有不同母质(第四纪红黏土或第三纪红砂岩)和不同肥力水平(高肥力或低肥力)的典型样地水稻土样品,通过454高通量测序测定细菌16S rRNA基因的V4−V5区,分析细菌多样性指数和群落组成变化。采用two-way ANOVA和two-way PERMANOVA探明母质和肥力对细菌多样性和群落组成的影响;主坐标分析(PCoA)、冗余分析(RDA)和多元回归树分析(MRT)明确细菌群落的变化,以及驱动该变化的关键土壤因子;共现网络分析阐明属水平特异细菌种群和关键土壤因子的关系;宏基因组差异分析工具(STAMP)确定不同土壤样品间差异物种。结果显示,母质和肥力对水稻土细菌多样性指数变化的贡献相似。但是肥力水平对细菌群落组成的影响要远大于母质。土壤因子,特别是土壤质地与细菌多样性指数密切相关。RDA分析发现土壤有机碳(SOC)是影响细菌群落组成的首要因素,并且25.5 g kg−1有机碳含量是驱动高肥力和低肥力土壤细菌群落组成分异的关键阈值。共现网络分析暗示高肥力水平下,由于土壤环境的改善,细菌趋向于合作关系,并且富营养型细菌占主导地位。STAMP分析发现高肥力水稻土中MassiliaRhodanobacter等富营养型细菌大量富集;而低肥力土壤中Anaerolinea等贫营养型细菌占主导。研究结果表明,不同母质和肥力水稻土中,土壤质地影响细菌多样性指数变化;而养分水平,特别是有机碳水平决定细菌群落组成的变化。


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4. Glycosylation of the hemagglutinin protein of H9N2 subtype avian influenza virus influences its replication and virulence in mice
TAN Liu-gang, CHEN Zhao-kun, MA Xin-xin, HUANG Qing-hua, SUN Hai-ji, ZHANG Fan, YANG Shao-hua, XU Chuan-tian, CUI Ning
Journal of Integrative Agriculture    2019, 18 (7): 1443-1450.   DOI: 10.1016/S2095-3119(19)62669-9
摘要209)      PDF    收藏
N-Linked glycosylation of hemagglutinin (HA) has been demonstrated to regulate the virulence and receptor-binding specificity of avian influenza virus (AIV).  In this study, we characterized the variation trend of naturally isolated H9N2 viruses for the potential N-linked glycosylation sites in HA proteins, and explored any important role of some glycosylation sites.  HA genes of 19 H9N2 subtype AIV strains since 2001 were sequenced and analyzed for the potential glycosylation sites.  The results showed that the viruses varied by losing one potential glycosylation site at residues 200 to 202, and having an additional one at residues 295 to 297 over the past few years.  Further molecular and single mutation analysis revealed that the N200Q mutation lost an N-linked glycosylation at positions 200 to 202 of the HA protein and affected the human-derived receptor affinity.  We further found that this N-linked glycosylation increased viral productivity in the lung of the infected mice.  These findings provide a novel insight on understanding the determinants of host adaption and virulence of H9N2 viruses in mammals.
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5. Application of virus-induced gene silencing for identification of FHB resistant genes
FAN Yan-hui, HOU Bing-qian, SU Pei-sen, WU Hong-yan, WANG Gui-ping, KONG Ling-rang, MA Xin, WANG Hong-wei
Journal of Integrative Agriculture    2019, 18 (10): 2183-2192.   DOI: 10.1016/S2095-3119(18)62118-5
摘要136)      PDF    收藏
Virus-induced gene silencing (VIGS) showed several advantages to identify gene functions such as short experimental cycle, more broad hosts, etc.  In this study, the feasibility and efficiency of employing Barley stripe mosaic virus (BSMV)-based VIGS system to evaluate Fusarium head blight (FHB) resistance were explored in wheat.  With variable conditions tested, it showed that the maximal silencing efficiency 78% on spike was obtained when the recombinant BSMV was inoculated on flag leaf at flagging stage.  However, the plant may reduce its own immunity to FHB when inoculated with BSMV.  To induce this impact, different Fusarium graminearum strains were tested and SF06-1 strain was selected for FHB resistance evaluation.  Using this system, TaAOC, TaAOS, and TaOPR3 involved in jasmonic acid (JA) signaling pathway were identified to positively regulate FHB resistance, which was underpinned by the results when silencing TaAOS in wheat by stable transgenic plants.
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6. Multi-functional roles of TaSSI2 involved in Fusarium head blight and powdery mildew resistance and drought tolerance
 
HU Li-qin, MU Jing-jing, SU Pei-sen, WU Hong-yan, YU Guang-hui, WANG Gui-ping, WANG Liang, MA Xin, LI An-fei, WANG Hong-wei, ZHAO Lan-fei, KONG Ling-rang
Journal of Integrative Agriculture    2018, 17 (2): 368-380.   DOI: 10.1016/S2095-3119(17)61680-0
摘要692)      PDF    收藏
The mutation of the gene encoding a stearoyl-acyl carrier protein fatty acid desaturase (ssi2) has been proved to enhance pathogen resistance in several plants, while it’s potential to regulate biotic and abiotic stresses in wheat is still unclear.  In this study, we cloned TaSSI2 gene in wheat and provided several evidences of its involvement in multiple biological functions.  By using barley stripe mosaic virus (BSMV)-induced gene silencing (VIGS) in wheat, it was found that TaSSI2 negatively regulated both powdery mildew and Fusarium head blight (FHB) resistance, which was consistent with the phenotype observed in knock-out mutants of Kronos.  The expression of TaSSI2 was down-regulated by in vitro treatments of methyl jasmonate (MeJA), but positively regulated by salicylic acid (SA) and abscisic acid (ABA), implying the cross-talk between different hormone signaling pathways involved in wheat to regulate biotic stresses is still to be elucidated.  Furthermore, the up-regulated expression of PR4 and PR5 indicated that TaSSI2 probably regulated FHB resistance by depressing the SA signaling pathway in wheat.  In addition, the over-expression of TaSSI2 increased the content of linolenic acid (18:3) and subsequently enhanced drought tolerance of transgenic Brachypodium.  This phenomenon might be associated with its subcellular localization in the whole cytosol, partly overlapping with Golgi apparatus and the secreted vesicles.  As a stearoyl-acyl carrier protein fatty acid desaturase, TaSSI2 was proposed to be involved in cell lipid metabolism and carried targets out of the cell from membrane or wax synthesis, resulting in enhanced drought tolerance in plant.
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7. Integrated management strategy for improving the grain yield and nitrogen-use efficiency of winter wheat
XU Hai-cheng, DAI Xing-long, CHU Jin-peng, WANG Yue-chao, YIN Li-jun, MA Xin, DONG Shu-xin, HE Ming-rong
Journal of Integrative Agriculture    2018, 17 (2): 315-327.   DOI: 10.1016/S2095-3119(17)61805-7
摘要791)      PDF    收藏
Understanding of how combinations of agronomic options can be used to improve the grain yield and nitrogen use efficiency (NUE) of winter wheat is limited.  A three-year experiment involving four integrated management strategies was conducted from 2013 to 2015 in Tai’an, Shandong Province, China, to evaluate changes in grain yield and NUE.  The integrated management treatments were as follows: current practice (T1); improvement of current practice (T2); high-yield management (T3), which aimed to maximize grain yield regardless of the cost of resource inputs; and integrated soil and crop system management (T4) with a higher seeding rate, delayed sowing date, and optimized nutrient management.  Seeding rates increased by 75 seeds m–2 with each treatment from T1 (225 seeds m–2) to T4 (450 seeds m–2).  The sowing dates were delayed from T1 (5th Oct.) to T2 and T3 (8th Oct.), and to T4 treatment (12th Oct.).  T1, T2, T3, and T4 received 315, 210, 315, and 240 kg N ha–1, 120, 90, 210 and 120 kg P2O5 ha–1, 30, 75, 90, and 45 kg K2O ha–1, respectively.  The ratio of basal application to topdressing for T1, T2, T3, and T4 was 6:4, 5:5, 4:6, and 4:6, respectively, with the N topdressing applied at regreening for T1 and at jointing stage for T2, T3, and T4.  The P fertilizers in all treatments were applied as basal fertilizer.  The K fertilizer for T1 and T2 was applied as basal fertilizer while the ratio of basal application to topdressing (at jointing stage) of K fertilizer for both T3 and T4 was 6:4.  T1, T2, T3, and T4 were irrigated five, four, four and three times, respectively.  Treatment T3 produced the highest grain yield among all treatments over three years and the average yield was 9 277.96 kg ha–1.  Grain yield averaged across three years with the T4 treatment (8 892.93 kg ha–1) was 95.85% of that with T3 and was 21.72 and 6.10% higher than that with T1 (7 305.95 kg ha–1) and T2 (8 381.41 kg ha–1), respectively.  Treatment T2 produced the highest NUE of all the integrated treatments.  The NUE with T4 was 95.36% of that with T2 and was 51.91 and 25.62% higher than that with T1 and T3, respectively.  The N uptake efficiency (UPE) averaged across three years with T4 was 50.75 and 16.62% higher than that with T1 and T3, respectively.  The N utilization efficiency (UTE) averaged across three years with T4 was 7.74% higher than that with T3.  The increased UPE with T4 compared with T3 could be attributed mostly to the lower available N in T4, while the increased UTE with T4 was mainly due to the highest N harvest index and low grain N concentration, which consequently led to improved NUE.  The net profit for T4 was the highest among four treatments and was 174.94, 22.27, and 28.10% higher than that for T1, T2, and T3, respectively.  Therefore, the T4 treatment should be a recommendable management strategy to obtain high grain yield, high NUE, and high economic benefits in the target region, although further improvements of NUE are required.
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8. The status and distribution characteristics of residual mulching film in Xinjiang, China
ZHANG Dan, LIU Hong-bin, HU Wan-li, QIN Xiao-hui, MA Xing-wang, YAN Chang-rong, WANG Hongyuan
Journal of Integrative Agriculture    2016, 15 (11): 2639-2646.   DOI: 10.1016/S2095-3119(15)61240-0
摘要1547)      PDF    收藏
    Pollution of residual plastic film in arable lands is a severe problem in China. In this study, the status of residual film and influential factors were investigated using the methods of farm survey in combination with questionnaires and quadrat sampling at a large number of field sites in Xinjiang Uygur Autonomous Region, China. The results showed that the amount of film utilization increased largely and reached to 1.8×105 t in 2013. Similarly, the mulching area also substantially increased in recent decades, and reached to 2.7×105 ha in the same year. According to the current survey, 60.7% of the sites presented a greater mulch residue than the national film residue standard (75 kg ha–1), and the maximum residual amount reached 502.2 kg ha–1 in Turpan, Xinjiang. The film thickness, the mulching time and the crop type all influenced mulch residue. The thickness of the film had significantly negative correlation with the amount of residual film (P<0.05), while the mulching years had significantly positive correlation with it (P<0.05). The total amount of residual film in Xinjiang was 3.43×105 t in 2011, which accounted for 15.3% of the cumulative dosage of mulching. Among all the crops, the cotton fields had the largest residual amount of mulch film (158.4 kg ha–1), and also the largest contribution (2.6×105 tons) to the total amount of residual film in Xinjiang.
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9. Functional analysis of a wheat pleiotropic drug resistance gene involved in Fusarium head blight resistance
WANG Gui-ping, HOU Wen-qian, ZHANG Lei, WU Hong-yan, ZHAO Lan-fei, DU Xu-ye, MA Xin, LI An-fei, WANG Hong-wei, KONG Ling-rang
Journal of Integrative Agriculture    2016, 15 (10): 2215-2227.   DOI: 10.1016/S2095-3119(16)61362-X
摘要1708)      PDF    收藏
    The pleiotropic drug resistance (PDR) sub-family of adenosine triphosphate (ATP)-binding cassette (ABC) transporter had been reported to participate in diverse biological processes of plant. In this study, we cloned three novel PDR genes in Fusarium head blight (FHB) resistant wheat cultivar Ning 7840, which were located on wheat chromosomes 6A, 6B and 6D. In phylogeny, these genes were members of cluster I together with AePDR7 and BdPDR7. Subcellular localization analysis showed that TaPDR7 was expressed on the plasmalemma. The quantitative real time PCR (RT-PCR) analysis showed that this gene and its probable orthologues in chromosomes 6B and 6D were both up-regulated sharply at 48 h after infected by Fusarium graminearum and trichothecene deoxynivalenol (DON) in spike. When knocking down the transcripts of all TaPDR7 members by barely stripe mosaic virus-induced gene silencing (BSMV-VIGS) system, it could promote the F. graminearum hyphae growth and made larger pathogen inoculation points in Ning 7840, which suggested that TaPDR7 might play an important role in response to F. graminearum. Although salicylic acid (SA), methyl jasmonate (MeJA) and abscisic acid (ABA) had been reported to possibly regulate wheat FHB resistance, here, we found that the three members of TaPDR7 were negatively regulated by these three hormones but positively regulated by indoleacetic acid (IAA).
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10. Cloning and characterization of a novel UDP-glycosyltransferase gene induced by DON from wheat
MA Xin, DU Xu-ye, LIU Guo-juan, YANG Zai-dong, HOU Wen-qian, WANG Hong-wei, FENG De-shun
Journal of Integrative Agriculture    2015, 14 (5): 830-838.   DOI: 10.1016/S2095-3119(14)60857-1
摘要2424)      PDF    收藏
Fusarium head blight (FHB), caused primarily by Fusarium graminearum, is a destructive disease of wheat throughout the world. However, the mechanisms of host resistance to FHB are still largely unclear. Deoxynivalenol (DON) produced by F. graminearum which enhances the pathogen to spread could be converted into inactive form D3G by UDP-glycosyltransferases (UGTs). A DON responsive UGT gene, designated as TaUGT4, was first cloned from wheat in this study. The putative open reading frame (ORF) of TaUGT4 was 1 386 bp, encoding 461 amino acids protein. TaUGT4 was placed on chromosome 2D using a set of nulli-tetrasomic lines of wheat cultivar Chinese Spring (CS). When fused with eGFP at C terminal, TaUGT4 was shown to localize in cytoplasm of the transformed tobacco cells. The transcriptional analysis revealed that TaUGT4 was strongly induced by F. graminearum or DON in both of FHB-resistant cultivar Sumai 3 and susceptible cultivar Kenong 199, especially in Sumai 3 under DON treatment. Similar increase of TaUGT4 expression was observed in Sumai 3 and Kenong 199 in response to salicylic acid (SA) treatment. But interestingly, the transcripts level of TaUGT4 in Sumai 3 showed significantly higher than that in Kenong 199 after treated with methyl jasmonate (MeJA). According to the expression patterns, TaUGT4 might lead to different effects between FHB-resistant genotype and susceptible genotype in the process against F. graminearum inoculation. It had also been discussed in this paper that JA signaling pathway might play a significant role in the resistance against F. graminearum compared to SA signaling pathway.
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11. Relative bioavailability of tribasic zinc sulfate for broilers fed a conventional corn-soybean meal diet
LI Wen-xiang, MA Xin-yan, LU Lin, ZHANG Li-yang, LUO Xu-gang
Journal of Integrative Agriculture    2015, 14 (10): 2042-2049.   DOI: 10.1016/S2095-3119(15)61033-4
摘要1656)      PDF    收藏
An experiment was carried out to investigate the relative bioavailability of tribasic zinc (Zn) sulfate relative to Zn sulfate for broilers fed a conventional corn-soybean meal diet. A total of 504 1-d-old Arbor Acres commercial male chicks were randomly assigned by body weight of birds to one of seven treatments involving a 2×3 factorial arrangement with three levels of added Zn (30, 60, or 90 mg of Zn kg–1) and two Zn sources (tribasic Zn sulfate and Zn sulfate) plus a control with no added Zn for an experimental phase of 14 d. Plasma Zn, tibia ash Zn, pancreas Zn, and pancreas metallothionein (MT) messenger RNA (mRNA) were analyzed at 6 or 14 d of age post-hatching. The results showed that plasma Zn, tibia ash Zn, pancreas Zn, and pancreas MT mRNA increased linearly (P<0.002) as dietary Zn concentration increased at 6 or 14 d of age. The R2 for a linear model was greater on d 6 than on d 14 for the above 4 responsive criteria, and among these indices, the fitting of the tibia ash Zn concentration was the best (R2=0.99). Therefore, based on slope ratios from the multiple linear regressions of the above 4 indices of the birds at 6 d of age on daily intake of dietary Zn, the bioavailabilities of tribasic Zn sulfate relative to Zn sulfate (100%) were 95.6% (P=0.18), 83.5% (P=0.01), 87.9% (P=0.53), and 75.9% (P=0.38) for the tibia ash Zn, pancreas Zn, plasma Zn, and pancreas MT mRNA, respectively. The results indicated that generally, Zn from tribasic Zn sulfate was as available as Zn from Zn sulfate for broilers.
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12. Effects of Chronic Stress of Cadmium and Lead on Anatomical Structure of Tobacco Roots
YUAN Zu-li, XIONG Shu-ping, LI Chun-ming , MA Xin-ming
Journal of Integrative Agriculture    2011, 10 (12): 1941-1948.   DOI: 10.1016/S1671-2927(11)60195-8
摘要2007)      PDF    收藏
Cadmium (Cd2+) is one of the major widespread environmental pollutants, and can cause serious problems to all organisms.
Lead (Pb2+) is another wide spread dangerous heavy metal. Tobacco is a popular growing economic crop in China. Most
tobacco growing region soils contain excessive Cd2+ and Pb2+. To assess anatomic changes of tobacco roots under Cd2+,
Pb2+, and Cd2++Pb2+ chronic stress, a pot experiment was carried out in field. The tobacco seedlings with 6 leaves were
transplanted to pots in which soil was placed. The amounts of Cd2+ added to soil were 0, 3, 6, 10, 30, 60, and 100 mg kg-1
dry soil. The amounts of Pb2+ added to soil were 0, 150, 300, 450, 600, 750, and 1 000 mg kg-1 dry soil. The amounts of
Cd2++Pb2+ added to soil were 0+0, 3+150, 6+300, 10+450, 30+600, 60+750, and 100+1 000 mg kg-1 dry soil. The contents of Cd2+ and Pb2+ in root systems were determined by inductively coupled plasma, and the anatomical structure was studied by method of paraffin sectioning. The results revealed that the amounts of exchangeable Cd2+ and Pb2+ and carbonate bound Cd2+ and Pb2+ in soil increased with the amounts of Cd2+ and Pb2+ added to soil, and the contents of both Cd2+ and Pb2+ in roots were significantly increased along with stress time and the amounts of Cd2+ and Pb2+ added to soil. The growing of tobacco in Cd2+ and Cd2++Pb2+ polluted soil for 50, 100, and 150 d resulted in some abnormal external morphological and anatomical changes in ripe region of lateral roots. All the abnormal roots had abnormal vascular cylinders, and the ratio of abnormal external morphological and anatomical changes of roots positively correlated with the Cd2+ contents in roots and stress time. While, there were no abnormal external morphological and anatomical changes of roots under Pb2+ stress. It was suggested that Cd2+ stress could cause abnormal anatomic changes of roots, but Pb2+ stress could not.
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