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1. 天敌昆虫——龟纹瓢虫(鞘翅目:瓢虫科)中国种群的 遗传变异和种群历史动态
WANG Meng-qi, ZHANG Hong-rui, XI Yu-qiang, WANG Gao-ping, ZHAO Man, ZHANG Li-juan, GUO Xian-ru
Journal of Integrative Agriculture    2023, 22 (8): 2456-2469.   DOI: 10.1016/j.jia.2022.08.025
摘要349)      PDF    收藏

龟纹瓢虫(鞘翅目:瓢虫科)在中国是一种自然天敌昆虫,捕食范围广泛,常用于害虫治理。然而其在中国区域内遗传模式(遗传变异、种群结构和历史动态)还不清楚,从而阻碍了害虫生物防治的发展进程。种群遗传数据对于天敌生防过程中不同阶段策略的优化具有很大潜力。本研究通过收集中国区域内30个采样区域的462头龟纹瓢虫样本,采用23对微卫星和线粒体COI分子标记,开展了该种的群遗传工作。微卫星数据显示龟纹瓢虫具有中等水平的遗传多样性,线粒体基因则显示出高水平的遗传多样性。与长江流域种群相比,黄河流域种群具有更高的遗传分歧。龟纹瓢虫中国种群未形成显著的地理种群结构,但存在群体分化的迹象,可能与种群间频繁的基因交流有关。种群经历瓶颈后出现扩张,寄主植物——害虫——天敌之间的三级营养关系是种群扩张的重要因素。种群遗传研究在害虫生物防治过程中发挥着重要作用,本研究通过估测种群遗传多样性、种群遗传差异和推种群历史动态,为有效利用天敌昆虫提供重要的遗传信息。

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2. MicroRNA transcriptome of skeletal muscle during yak development reveals miR-652 regulates myoblasts differentiation and survival by targeting ISL1
ZHOU Xue-lan, GUO Xian, LIANG Chun-nian, CHU Min, WU Xiao-yun, YAN Ping
Journal of Integrative Agriculture    2023, 22 (5): 1502-1513.   DOI: 10.1016/j.jia.2022.08.116
摘要352)      PDF    收藏

【背景】牦牛骨骼肌的生长发育决定其产肉量,进而影响经济收入。因此提高牦牛的产肉性能是发展牦牛产业的重要任务。骨骼肌发育过程受许多基因的调控,包括一些非编码RNA的调控,如miRNA。然而牦牛出生前后骨骼肌中miRNA的转录调控机制并不清楚。【目的】通过小RNA测序挖掘与牦牛骨骼肌生长发育有关的miRNA,并通过C2C12细胞对候选miRNA进行功能研究,为牦牛骨骼肌发育机制解析提供基础。【方法】对出生前后牦牛背最长肌(3个胎牛和3个成年牛)进行miRNA转录本测序,基于(log2 (差异倍数) |>1P≤0.05筛选差异miRNAs,并通过Miranda和TargetScan算法预测差异miRNAs靶基因并求交集,对差异miRNA靶基因进行GOKEGG富集分析。在C2C12细胞中通过干扰和过表达实验对候选miRNA进行功能分析,通过双荧光素酶实验验证候选miRNA的靶基因。【结果】本研究在胎牛和成年牦牛背最长肌中共鉴定到264miRNAs264个差异miRNAs共预测到5183个靶基因。GOKEGG结果显示,差异miRNA的靶基因主要富集在能量平衡,蛋白激酶结合,ATP结合等GO条目,及一些与肌肉发育有关的信号通路,如MAPK,PI3K-Akt,Hippo等信号通路。其中候选miR-652在胎牛背最长肌中上调表达。通过在C2C12细胞中转染miR-652发现,miR-652可促进C2C12细胞的增殖和分化(P≤0.05),同时抑制C2C12细胞晚期凋亡(P≤0.001)。细胞周期实验结果显示,miR-652可导致C2C12细胞百分比在G1期下降(P≤0.001),S期和G2期上升(P≤0.01)。双荧光素酶实验结果提示ISL1miR-652的一个靶基因。【结论】牦牛在出生前后骨骼肌中存在大量差异表达的miRNA,表明miRNA参与牦牛骨骼肌发育,miR-652可能通过靶向ISL1基因调控牦牛骨骼肌生长发育。

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3.
Identification of summer nectar plants contributing to outbreaks of Mythimna separata (Walker) (Lepidoptera: Noctuidae) in North China
GUO Pei, WANG Gao-ping, JIN Li-jie, FAN Xing-qi, HE Han-lin, ZHOU Pei-wen, GUO Xian-ru, LI Wei-zheng, YUAN Guo-hui
Journal of Integrative Agriculture    2018, 17 (07): 1516-1526.   DOI: 10.1016/S2095-3119(17)61840-9
摘要284)      PDF(pc) (5911KB)(0)    收藏
Received  7 June, 2017    Accepted  13 October, 2017
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4. Estimating distribution of water uptake with depth of winter wheat by hydrogen and oxygen stable isotopes under different irrigation depths
GUO Fei, MA Juan-juan, ZHENG Li-jian, SUN Xi-huan, GUO Xiang-hong, ZHANG Xue-lan
Journal of Integrative Agriculture    2016, 15 (4): 891-906.   DOI: 10.1016/S2095-3119(15)61258-8
摘要2033)      PDF    收藏
Crop root system plays an important role in the water cycle of the soil-plant-atmosphere continuum. In this study, combined isotope techniques, root length density and root cell activity analysis were used to investigate the root water uptake mechanisms of winter wheat (Triticum aestivum L.) under different irrigation depths in the North China Plain. Both direct inference approach and multisource linear mixing model were applied to estimate the distribution of water uptake with depth in six growing stages. Results showed that winter wheat under land surface irrigation treatment (Ts) mainly absorbed water from 10–20 cm soil layers in the wintering and green stages (66.9 and 72.0%, respectively); 0–20 cm (57.0%) in the jointing stage; 0–40 (15.3%) and 80–180 cm (58.1%) in the heading stage; 60–80 (13.2%) and 180–220 cm (35.5%) in the filling stage; and 0–40 (46.8%) and 80–100 cm (31.0%) in the ripening stage. Winter wheat under whole soil layers irrigation treatment (Tw) absorbed more water from deep soil layer than Ts in heading, filling and ripening stages. Moreover, root cell activity and root length density of winter wheat under Tw were significantly greater than that of Ts in the three stages. We concluded that distribution of water uptake with depth was affected by the availability of water sources, the root length density and root cell activity. Implementation of the whole soil layers irrigation method can affect root system distribution and thereby increase water use from deeper soil and enhance water use efficiency.
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5. Novel SNP of EPAS1 gene associated with higher hemoglobin concentration revealed the hypoxia adaptation of yak (Bos grunniens)
WU Xiao-yun, DING Xue-zhi, CHU Min, GUO Xian, BAO Peng-jia, LIANG Chun-nian, YAN Ping
Journal of Integrative Agriculture    2015, 14 (4): 741-748.   DOI: 10.1016/S2095-3119(14)60854-6
摘要2237)      PDF    收藏
Endothelial PAS domain protein 1 gene (EPAS1) is a key transcription factor that activates the expression of oxygen-regulated genes. In this study, in order to better understand the effects of EPAS1 gene on hematologic parameters in yak, we firstly quantified the tissue expression patterns for EPAS1 mRNA of yak, identified polymorphism in this gene and evaluated its association with hematologic parameters. Expression of EPAS1 mRNA was detected in all eight tissues (heart, liver, lung, spleen, pancreas, kidney, muscles and ovary). The expressions of EPAS1 in lung and pancreas were extremely higher than other tissues examined. Three novel single nucleotide polymorphisms (SNPs) (g.83052 C>T, g.83065 G>A and g.83067 C>A) within the EPAS1 were identified and genotyped in Pali (PL), Gannan (GN) and Tianzhu White (TZW) yak breeds. Significant higher frequencies of the AA and GA genotypes and A allele of the g.83065 G>A were observed in the PL and GN breeds than that in the TZW breed (P<0.01). Association analysis of the PL breed indicated that the g.83065 G>A polymorphism was significantly associated with hemoglobin (HGB) concentration in yaks (P<0.05). Individuals with genotype AA had significantly higher HGB concentration (P<0.05) than those with genotype GA and GG. All these results will help our further understanding of biological functional of yak EPAS1 gene in responding to hypoxia and also indicate EPAS1 might contribute to the hypoxia adaptation of the yak.
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6. Genetic parameters for somatic cell score and production traits in the first three lactations of Chinese Holstein cows
ZHAO Fu-ping, GUO Gang, WANG Ya-chun, GUO Xiang-yu, ZHANG Yuan, DU Li-xin
Journal of Integrative Agriculture    2015, 14 (1): 125-130.   DOI: 10.1016/S2095-3119(14)60758-9
摘要1666)      PDF    收藏
The objectives of this study were to estimate genetic parameters of lactation average somatic cell scores (LSCS) and examine genetic associations between LSCS and production traits in the first three lactations of Chinese Holstein cows using single-parity multi-trait animal model and multi-trait repeatability animal model. There were totally 273 605 lactation records of Chinese Holstein cows with first calving from 2001 to 2012. Heritability estimates for LSCS ranged from 0.144 to 0.187. Genetic correlations between LSCS and 305 days milk, protein percentage and fat percentage were –0.079, –0.082 and –0.135, respectively. Phenotypic correlation between LSCS and 305 days milk yield was negative (–0.103 to –0.190). Genetic correlation between 305 days milk and fat percentage or protein percentage was highly negative. Genetic correlation between milk fat percentage and milk protein percentage was highly favorable. Heritabilities of production traits decreased with increase of parity, whereas heritability of LSCS increased with increase of parity.
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