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1. 磷管理与种植技术相结合,实现玉米的可持续生产
Haiqing Gong, Yue Xiang, Jiechen Wu, Laichao Luo, Xiaohui Chen, Xiaoqiang Jiao, Chen Chen
Journal of Integrative Agriculture    2024, 23 (4): 1369-1380.   DOI: 10.1016/j.jia.2023.10.018
摘要139)      PDF    收藏

在有限的环境影响下实现玉米高产和磷高效利用是玉米可持续生产面临的最大挑战之一。增加种植密度被认为是实现玉米高产的有效途径。然而,土壤中磷移动性低和磷矿资源稀缺阻碍了在高植物密度下同时优化磷利用和减轻磷相关足迹的方法的发展。本研究通过meta分析和物质流分析,评估了不同种植密度下不同类型磷肥对玉米产量的影响,并评估了磷从磷矿开采到用于玉米生产的磷的流动。在较高的种植密度下玉米产量显著高于较低的密度。与施用磷酸二铵和磷酸一铵相比,高密度玉米种植体系施用过磷酸钙、重过磷酸和钙镁磷肥具有更高的产量和更小的环境足迹。情景分析表明,将最佳磷肥品种和施用量与高密度种植体系相结合,玉米产量可提高22%。整个磷供应链的磷资源效率提高了39%,而与磷足迹减少了33%。因此,在玉米生产过程中,同时优化高密度条件下的磷肥品种和施用量,可以实现多目标协同,表明磷管理与种植技术相结合是实现玉米可持续生产的可行途径。这些发现为实现可持续农业发展提供了重要的选择。

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2. ACS11一个新突变类型导致黄瓜只开雄花
WANG Jie, LI Shuai, CHEN Chen, ZHANG Qi-qi, ZHANG Hui-min, CUI Qing-zhi, CAI Guang-hua, ZHANG Xiao-peng, CHAI Sen, WAN Li, YANG Xue-yong, ZHANG Zhong-hua, HUANG San-wen, CHEN Hui-ming, SUN Jin-jing
Journal of Integrative Agriculture    2023, 22 (11): 3312-3320.   DOI: 10.1016/j.jia.2023.03.003
摘要199)      PDF    收藏

植物的单性花可以有效促进异交,研究单性花的形成和调控机制对于理解植物性别决定过程有重要意义,也为研究者和农业生产者利用杂种优势提供便利。在黄瓜杂交制种过程中,只开花的株系种植于只开雄花的株系周围,可以显著降低制种成本。筛选更多不同基因背景的只开雄花的材料,将增加可用于育种的种质资源。我基于前期构建的EMS诱变自交系材料406”的突变体库,发现了一个新的只开雄花的突变体遗传分析、全基因组重测序和分子标记辅助验证表明,ACS11基因上发生异义突变301位丝氨酸(Ser)变为苯丙氨酸(Phe)导致全雄株的产生。体外酶活性测定表明,此突变导致酶活性完全丧失。本研究为黄瓜雄性亲本选育提供了新的种质资源,并为 ACS 酶的催化机理提供了新的认识。

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3. Detection and enumeration of wheat grains based on a deep learning method under various scenarios and scales
WU Wei, YANG Tian-le, LI Rui, CHEN Chen, LIU Tao, ZHOU Kai, SUN Cheng-ming, LI Chun-yan, ZHU Xin-kai, GUO Wen-shan
Journal of Integrative Agriculture    2020, 19 (8): 1998-2008.   DOI: 10.1016/S2095-3119(19)62803-0
摘要145)      PDF    收藏
Grain number is crucial for analysis of yield components and assessment of effects of cultivation measures.  The grain number per spike and thousand-grain weight can be measured by counting grains manually, but it is time-consuming, tedious and error-prone.  Previous image processing algorithms cannot work well with different backgrounds and different sizes.  This study used deep learning methods to resolve the limitations of traditional image processing algorithms.  Wheat grain image datasets were collected in the scenarios of three varieties, six background and two image acquisition devices with different heights, angles and grain numbers, 1 748 images in total.  All images were processed through color space conversion, image flipping and rotation.  The grain was manually annotated, and the datasets were divided into training set, validation set and test set.  We used the TensorFlow framework to construct the Faster Region-based Convolutional Neural Network Model.  Using the transfer learning method, we optimized the wheat grain detection and enumeration model.  The total loss of the model was less than 0.5 and the mean average precision was 0.91.  Compared with previous grain counting algorithms, the grain counting error rate of this model was less than 3% and the running time was less than 2 s.  The model can be effectively applied under a variety of backgrounds, image sizes, grain sizes, shooting angles, and shooting heights, as well as different levels of grain crowding.  It constitutes an effective detection and enumeration tool for wheat grain.  This study provides a reference for further grain testing and enumeration applications.
 
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4. An EMS mutant library for cucumber
CHEN Chen, CUI Qing-zhi, HUANG San-wen, WANG Shen-hao, LIU Xiao-hong, LU Xiang-yang, CHEN Hui-ming, TIAN Yun
Journal of Integrative Agriculture    2018, 17 (07): 1612-1619.   DOI: 10.1016/S2095-3119(17)61765-9
摘要385)      PDF(pc) (25875KB)(190)    收藏
Cucumber is an important vegetable crop and a model crop for the study of sex expression in plants.  However, the genomic resources and tools for functional genomics studies in cucumber are still limited.  In this paper, we conducted ethyl methyl sulfone (EMS) mutagenesis in the northern China ecotype cucumber inbred line 406 to construct a mutant library.  We optimized the conditions of EMS mutagenesis on inbred line 406 which included treatment of seeds at 1.5% EMS for 12 h.  We obtained a number of mutant lines showing inheritable morphological changes in plant architecture, leaves, floral organs, fruits and other traits through M1, M2 and M3 generations.  The F2 segregating populations were constructed and analyzed.We found that a short fruit mutant and a yellow-green fruit peel mutant were both under the control of a single recessive gene, respectively.  These results provide valuable germplasm resources for the improvement of cucumber genetics and functional genomic research.
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5. Evaluating the grassland net primary productivity of southern China from 2000 to 2011 using a new climate productivity model
SUN Cheng-ming, ZHONG Xiao-chun, CHEN Chen, GU Ting, CHEN Wen
Journal of Integrative Agriculture    2016, 15 (7): 1638-1644.   DOI: 10.1016/S2095-3119(15)61253-9
摘要1400)      PDF    收藏
    Grassland is the important component of the terrestrial ecosystems. Estimating net primary productivity (NPP) of grassland ecosystem has been a central focus in global climate change researches. To simulate the grassland NPP in southern China, we built a new climate productivity model, and validated the model with the measured data from different years in the past. The results showed that there was a logarithmic correlation between the grassland NPP and the mean annual temperature, and there was a linear positive correlation between the grassland NPP and the annual precipitation in southern China. All these results reached a very significant level (P<0.01). There was a good correlation between the simulated and the measured NPP, with R2 of 0.8027, reaching the very significant level. Meanwhile, both root mean square errors (RMSE) and relative root-mean-square errors (RRMSE) stayed at a relatively low level, showing that the simulation results of the model were reliable. The NPP values in the study area had a decreasing trend from east to west and from south to north, and the mean NPP was 471.62 g C m−2 from 2000 to 2011. Additionally, there was a rising trend year by year for the mean annual NPP of southern grassland and the tilt rate of the mean annual NPP was 3.49 g C m−2 yr−1 in recent 12 years. The above results provided a new method for grassland NPP estimation in southern China.
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6. A Co-Dominant Marker BoE332 Applied to Marker-Assisted Selection of Homozygous Male-Sterile Plants in Cabbage (Brassica oleracea var. capitata L.)
CHEN Chen, ZHUANG Mu, FANG Zhi-yuan, WANG Qing-biao, ZHANG Yang-yong, LIU Yu-mei
Journal of Integrative Agriculture    2013, 12 (4): 596-602.   DOI: 10.1016/S2095-3119(13)60277-4
摘要1193)      PDF    收藏
The dominant genic male sterility (DGMS) gene CDMs399-3 derived from a spontaneous mutation in the line 79-399-3 of spring cabbage (Brassica oleracea var. capitata L.), has been successfully applied in hybrid seed production of several cabbage cultivars in China. During the development of dominant male sterility lines in cabbage, the conventional identification of homozygous male-sterile plants (CDMs399-3/CDMs399-3) is a laborious and time-consuming process. For marker-assisted selection (MAS) of the gene CDMs399-3 transferred into key spring cabbage line 397, expressed sequence tag-simple sequence repeats (EST-SSR) and SSR technology were used to identify markers that were linked to CDMs399-3 based on method of bulked segregant analysis (BSA). By screening a set of 978 EST-SSRs and 395 SSRs, a marker BoE332 linked to the CDMs399-3 at a distance of 3.6 cM in the genetic background of cabbage line 397 were identified. 7 homozygous male-sterile plants in population P1170 with 20 plants were obtained finally via MAS of BoE332. Thus, BoE332 will greatly facilitate the transferring of the gene CDMs399-3 into the key spring cabbage line 397 and improve the application of DGMS in cabbage hybrid breeding.
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