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1.
JIA-2021-0715 小麦转录因子家族基因
TaNF-YB11
通过调节渗透物积累和活性氧稳态增强植株耐旱能力
ZHAO Ying-jia, ZHANG Yan-yang, BAI Xin-yang, LIN Rui-ze, SHI Gui-qing, DU Ping-ping, XIAO Kai
Journal of Integrative Agriculture 2022, 21 (
11
): 3114-3130. DOI:
10.1016/j.jia.2022.07.058
摘要
(
268
)
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转录因子(TFs)调控多种逆境防御相关的生理过程和植物逆境响应。本研究中,作者鉴定了小麦NF-YB转录因子家族基因
TaNF-YB11
介导植物抵御干旱逆境能力的特征。
TaNF-YB11
含有NF-YB家族特有的保守结构域,该基因编码蛋白经内质网分选后靶向细胞核内。酵母双杂交分析表明,TaNF-YB11分别与NF-YA家族成员TaNF-YA2和NF-YC家族成员TaNF-YC3在蛋白水平上相互作用。这些结果表明,上述TF蛋白通过组建异源三聚体对下游基因进行转录调控。在27 h干旱条件下,根和叶中
TaNF-YB11
转录本数量较正常生长对照增多。此外,干旱上调的
TaNF-YB11
表达水平随正常恢复处理进程逐渐下调,表明该基因参与了植物对干旱逆境的响应过程。
TaNF-YB11
具有赋予植株抵御抗旱逆境的能力; 干旱处理下,过表达
TaNF-YB11
株系植株表型和生物量均高于野生型对照,这主要与该基因促进气孔关闭、增强渗透物质积累能力和改善细胞活性氧(ROS)稳态有关。调控脯氨酸生物合成P5CS家族基因
TaP5CS2
在
TaNF-YB11
株系中呈上调表达模式,干旱胁迫下下调表达
TaP5CS2
株系脯氨酸积累量减少。与此类似,编码超氧化物歧化酶(SOD)
TaSOD2
和过氧化氢酶(CAT)基因
TaCAT3
在过表达
TaNF-YB11
株系中上调表达,上述细胞保护酶基因通过调节SOD和CAT活性在改善干旱处理下细胞ROS稳态中发挥重要作用。RNA-seq分析结果显示,与“细胞过程”、“环境信息处理”、“遗传信息加工”、“代谢”和“机体系统”相关的众多基因受到
TaNF-YB11
转录调节。本研究结果表明,
TaNF-YB11
通过在转录组水平上对干旱逆境响应相关的不同生物学过程基因进行调控,增强植株抵御干旱逆境的能力。综上,
TaNF-YB11
在介导植株抵御干旱逆境中发挥重要作用,该基因可作为小麦抗旱分子育种的重要基因资源。
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2.
Characterization of low-N responses in maize (
Zea mays
L.) cultivars with contrasting nitrogen use efficiency in the North China Plain
LI Xiang-ling, GUO Li-guo, ZHOU Bao-yuan, TANG Xiang-ming, CHEN Cong-cong, ZHANG Lei, ZHANG Shao-yun, LI Chong-feng, XIAO Kai, DONG Wei-xin, YIN Bao-zhong, ZHANG Yue-chen
Journal of Integrative Agriculture 2019, 18 (
9
): 2141-2152. DOI:
10.1016/S2095-3119(19)62597-9
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144
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Over-use of N fertilizer in crop production has resulted in a series of environmental problems in the North China Plain (NCP). Thus, improvement of nitrogen use efficiency (NUE) in summer maize has become an effective strategy for promoting sustainable agriculture in this region. Using twenty maize cultivars, plant dry matter production, N absorption and accumulation, yield formation, and NUE in summer maize were investigated under three N levels in two growing seasons. Based on their yield and yield components, these maize cultivars were categorized into four groups including efficient-efficient (EE) cultivars, high-nitrogen efficient (HNE) cultivars, low-nitrogen efficient (LNE) cultivars and nonefficient-nonefficient (NN) cultivars. In both two seasons, the EE cultivars improved grain yield together with increased plant biomass, and enhanced accumulative amounts as well as higher average grain yields than the other cultivar groups under deficient-N conditions. Significant correlations were observed between yield and kernel numbers (KN), dry matter (DM) amount and N accumulation at both post-silking and maturity stages. DM and N accumulation at late growth stage (i.e., from silking to maturity) contributed largely to the enhanced yield capacity and improved NUE under N-deficient conditions. Compared with the NN cultivars, the EE cultivars also showed increased N assimilation amount (NAA) and N remobilization content (NRC), and elevated N remobilization efficiency (NRE), NUE and nitrogen partial factor productivity (PFPN). Our investigation has revealed N-associated physiological processes and may provide guidance for cultivation and breeding of high yield and NUE summer maize under limited N conditions in the NCP.
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3.
TaARR1
, a cytokinin response regulator gene in
Triticum aestivum
, is essential in plant N starvation tolerance via regulating the N acquisition and N assimilation
YANG Meng-ya, CHEN Jia-qi, TIAN He-yang, NI Chen-yang, XIAO Kai
Journal of Integrative Agriculture 2019, 18 (
12
): 2691-2702. DOI:
10.1016/S2095-3119(19)62698-5
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135
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Plant N starvation response is closely associated with the N signaling components that involve transduction of the low-N cues. In this study, we functionally characterized
TaARR1
, a cytokinin (CK) response regulator gene in
Triticum aestivum
, in mediating the N starvation adaptation in plants.
TaARR1
harbors two conserved domains specified by plant ARR family members; subcellular localization analysis indicated its target onto nucleus after endoplasmic reticulum assortment.
TaARR1
displayed modified expression upon the N starvation stressor, showing upregulated expression in roots and leaves over a 27-h N starvation treatment and whose induced transcripts were gradually recovered along with progression of the N recovery treatment. The tobacco lines overexpressing
TaARR1
displayed improved low-N stress tolerance, displaying enlarged phenotype, increased biomass and N accumulation, and enhanced glutamine synthetase (GS) activities compared with wild type (WT) following the N starvation treatment. Expression analysis on genes encoding the nitrate transporter (NRT) and GS proteins in Nicotiana tabacum revealed that
NtNRT2.2
and
NtGS3
are upregulated in expression in the N-deprived transgenic lines, whose expression patterns were contrasted to other above family genes that were unaltered on transcripts between the transgenic lines and WT. Transgene analysis validated the function of
NtNRT2.2
and
NtGS3
in regulating N accumulation, GS activity, growth traits, and N use efficiency in plants. These results suggested the internal connection between the
TaARR1
-mediated N starvation tolerance and the modified transcription of distinct N acquisition- and assimilation-associated genes. Our investigation together indicates that
TaARR1
is essential in plant N starvation adaptation due to the gene function in transcriptionally regulating distinct NRT and GS genes that affect plant N uptake and assimilation under the N starvation condition.
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4.
TaMIR1119, a miRNA family member of wheat (
Triticum aestivum
), is essential in the regulation of plant drought tolerance
SHI Gui-qing, FU Jing-ying, RONG Ling-jie, ZHANG Pei-yue, GUO Cheng-jin, XIAO Kai
Journal of Integrative Agriculture 2018, 17 (
11
): 2369-2378. DOI:
10.1016/S2095-3119(17)61879-3
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392
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Through regulating target genes via the mechanisms of posttranscriptional cleavage or translational repression, plant miRNAs involve diverse biological processes associating with plant growth, development, and abiotic stress responses. In this study, we functionally characterized TaMIR1119, a miRNA family member of wheat (
Triticum aestivum
), in regulating the drought adaptive response of plants. TaMIR1119 putatively targets six genes categorized into the functional classes of transcriptional regulation, RNA and biochemical metabolism, trafficking, and oxidative stress defense. Upon simulated drought stress, the TaMIR1119 transcripts abundance in roots was drastically altered, showing to be upregulated gradually within a 48-h drought regime and that the drought-induced transcripts were gradually restored along with a 48-h recovery treatment. In contrast, most miRNA target genes displayed reverse expression patterns to TaMIR1119, exhibiting a downregulated expression pattern upon drought and whose reduced transcripts were re-elevated along with a normal recovery treatment. These expression analysis results indicated that TaMIR1119 responds to drought and regulates the target genes mainly through a cleavage mechanism. Under drought stress, the tobacco lines with TaMIR1119 overexpression behaved improved phenotypes, showing increased plant biomass, photosynthetic parameters, osmolyte accumulation, and enhanced antioxidant enzyme (AE) activities relative to wild type. Three AE genes,
NtFeSOD
,
NtCAT1;3
, and
NtSOD2;1,
encoding superoxide dismutase (SOD), catalase (CAT), and peroxidase (POD) proteins, respectively, showed upregulated expression in TaMIR1119 overexpression lines, suggesting that they are involved in the regulation of AE activities and contribution to the improved cellular reactive oxygen species (ROS) homeostasis in drought-challenged transgenic lines. Our results indicate that TaMIR1119 plays critical roles in regulating plant drought tolerance through transcriptionally regulating the target genes that modulate osmolyte accumulation, photosynthetic function, and improve cellular ROS homeostasis of plants.
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5.
Expression and functional analyses of the mitogen-activated protein kinase (MPK) cascade genes in response to phytohormones in wheat (
Triticum aestivum
L.)
YAO Su-fei, WANG Yan-xia, YANG Tong-ren, HAO Lin, LU Wen-jing, XIAO Kai
Journal of Integrative Agriculture 2017, 16 (
01
): 27-35. DOI:
10.1016/S2095-3119(16)61367-9
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(
1007
)
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Mitogen-activated protein kinase (MPK) cascades consist of a set of kinase types (MPKKKs, MPKKs, MPKs) to establish
conserved signal-transducing modules mediating plant growth, development as well as responses to internal and external
cues. In this study, the expression patterns of six MPKKK, two MPKK, and 11 MPK genes in wheat in responses to external
treatments of phytohormones, including naphthylacetic acid (NAA), abscisic acid (ABA), 6-benzyladenine (6-BA), gibberellin
(GA
3
), salisylic acid (SA), jasmonic acid (JA), and ethylene (ETH), were investigated. Expression analysis revealed
that several of the MPK cascade genes are responses to the external phytohormone signaling. Of which,
TaMPKKKA
;3
is induced by 6-BA and NAA while
TaMPK4
repressed by ETH, GA
3,
SA, and JA;
TaMPKKKA
,
TaMPKKKA
;3 and
TaMPK1
are down-regulated by ETH and GA
3
whereas
TaMPK9
and
TaMPK12
repressed by ETH and JA in addition that
TaMPK12
also repressed by GA
3;
TaMPK12
;1 is down-regulated by ABA, GA
3
and SA while
TaMPK17
repressed by all exogenous
phytonormones examined.
TaMPK4
, a MPK type gene previously characterized to mediate tolerance to phosphate (Pi)
deprivation, was functionally evaluated for its role in mediation of responses of plants to exogenous GA
3
, ETH, SA, and JA.
Results indicated that overexpression and antisense expression of
TaMPK4
in tobacco dramatically modify the growth of
seedlings upon treatments of GA
3
, SA and JA, in which the overexpressors behaved deteriorated growth feature whereas
the seedlings with antisense expression of
TaMPK4
exhibited improved seedling phenotype. The growth behaviors in
lines overexpressing or antisensely expressing
TaMPK4
are closely associated with the biomass and the corresponding
hormone-associated parameters. These results demonstrated that
TaMPK4
acts as a critical player in mediating the phytohormone
signaling. Our findings have identified the phytohormone-responsive MPK cascade genes in wheat and provided
a connection between the phytohormone-mediated responses and the MPK cascade pathways.
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6.
Expression pattern and function analyses of the MADS thranscription factor genes in wheat (
Triticum aestivum
L.) under phosphorusstarvation condition
SHI Shu-ya, ZHANG Fei-fei, GAO Si, XIAO Kai
Journal of Integrative Agriculture 2016, 15 (
8
): 1703-1715. DOI:
10.1016/S2095-3119(15)61167-4
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2037
)
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MADS-box (MADS) transcription factors (TFs) act as one of the largest TF families in plants. The members in this family play fundamental roles in almost every developmental process as well as involve plant responses to biotic and abiotic stresses. In this study, 54 of MADS genes in wheat, including 31 released publicly and 23 deposited as tentative consensus (TC) into GenBank database, were subjected to analyses of molecular characterization, expression pattern, and function under contrasting phosphate (Pi)-supply conditions. The 31 released MADS genes share cDNA full lengths of 683 to 1 297 bp, encoding amino acids of 170 to 274 aa that possess molecular weights of 19.21 to 31.33 kDa and isoelectric points of 5.74 to 9.63. Phylogenetic analysis categoried these wheat MADS genes into four subgroups containing 11, 5, 10, and 4 members, respectively. Under Pi sufficiency, the MADS genes showed drastically varied transcripts and they were categoried into expression groups of high, medium, low, and very low, respectively. Among them, several ones were differentially expressed under Pi deprivation, including that five were upregulated (
TaMADS51
,
TaMADS4
,
TaMADS5
,
TaMADS6
, and T
aMADS18
) and four were downregulated (
TaMADAGL17
,
TaMADAGL2
,
TaMADWM31C
, and
TaMADS;14
). qPCR analyses confirmed their expression patterns in responding to the Pi-starvation stress.
TaMADS51
, one of the upregulated genes by Pi deprivation, was subjected to the functional analysis in mediating plant tolerance to the Pi-starvation stress. The transgenic tobocco plants overexpressing
TaMADS51
exhibited much more improved growth features, drymass, Pi acquisition, and photosynthetic parameters as well as antioxidant enzymatic activities under Pi deprivation than wild type. These results indicate that distinct MADS genes are transcriptional response to Pi deprivation and play critical roles in mediating plant tolerance to this stressor through regulating downstream Pi-responsive genes.
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7.
Growth traits and nitrogen assimilation-associated physiological parameters of wheat (Triticum aestivum L.) under low and high N conditions
ZHANG Fei-fei, GAO Si, ZHAO Yuan-yuan, ZHAO Xiao-lei, LIU Xiao-man, XIAO Kai
Journal of Integrative Agriculture 2015, 14 (
7
): 1295-1308. DOI:
10.1016/S2095-3119(14)60957-6
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(
1980
)
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In this study, 14 wheat cultivars with contrasting yield and N use efficiency (NUE) were used to investigate the agronomic and NUE-related traits, and the N assimilation-associated enzyme activities under low and high N conditions. Under deficient-N, the cultivars with high N uptake efficiency (UpE) and high N utilization efficiency (UtE) exhibited higher plant biomass, yields, and N contents than those with medium and low NUEs. The high UpE cultivars accumulated more N than other NUE type cultivars. Under sufficient-N, the tested cultivars showed similar patterns in biomass, yield, and N content to those under deficient-N, but the varietal variations in above traits were smaller. In addition, the high UpE cultivars displayed much more of root biomass and larger of root length, surface area, and volume than other NUE type cultivars, indicating that the root morphological traits under N deprivation are closely associated with the plant biomass through its improvement of the N acquisition. The high UtE cultivars showed higher activities of nitrate reductase (NR), nitrite reductase (NIR), and glutamine synthetase (GS) at stages of seediling, heading and filling than other NUE type cultivars under both low and high N conditions. Moreover, the high UpE and UtE cultivars also displayed higher photosynthetic rate under deficient-N than the medium and low NUE cultivars. Together, our results indicated that the tested wheat cultivars possess dramatically genetic variations in biomass, yield, and NUE. The root morphological traits and the N assimilation enzymatic acitivities play critical roles in regulating N accumulation and internal N translocation under the N-starvation stress, respectively. They can be used as morphological and biochemical references for evaluation of UpE and UtE in wheat.
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8.
Molecular Characterization and Functional Analysis of OsPHY1, a Purple Acid Phosphatase (PAP)-Type Phytase Gene in Rice (Oryza sativa L.)
LI Rui-juan, LU Wen-jing, GUO Cheng-jin, LI Xiao-juan, GU Jun-tao, XIAO Kai
Journal of Integrative Agriculture 2012, 12 (
8
): 1217-1226. DOI:
10.1016/S1671-2927(00)8650
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1221
)
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As a specific type of acid phosphatses, phytases play diverse roles in plants by catalazing the degradation of phytic acid and its derivatives. In this study, a rice phytase gene referred to OsPHY1 has been functionally characterized. OsPHY1 contains a 1 620 bp of open reading frame, encoding a 539-aa polypeptide. A conserve domain metallophosphatase (MPP) (MPP_PAPs), generally harbored in phytase and purple acid phosphatases (PAP), was identified in OsPHY1 (residue 194- 398). Phylogenetic analysis revealed that OsPHY1 shares high similarities with phytase genes and PAP-type genes that derived from diverse plant species. The OsPHY1 transcripts were detected to be abundant in germinating seeds, suggesting that this gene plays potential roles on degradation of seed phytic acid and its derivatives during the germination process. Biochemical analysis confirmed that OsPHY1 possesses strong catalytic activities on phytic acid-Na2, with optimal temperature of 57°C and suitable pH of 3.5. Based on transgene analysis, the putative role of OsPHY1 in plants on utilization of phytate was assessed. Under the condition that phytic acid-Na2 was used as sole P source, the OsPHY1- overexpressing tobacco plants behaved higher phytase activities, higher concentrations of Pi, more accumulative amount of total phosphorus, and much more improved growth traits than those of the control plants. Therefore, OsPHY1 is acted as an important component on degradation of the phytins during the seed germination process in rice. Also, OsPHY1 has a potential use on generation of elite crop germplasms with improved use efficiencies on phytate and its derivatives.
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9.
Molecular Characterization and Expression Analysis of TaZFP15, a C2H2- Type Zinc Finger Transcription Factor Gene in Wheat (Triticum aestivum L.)
SUN Zhao-hua, DING Chang-huan, LI Xiao-juan , XIAO Kai
Journal of Integrative Agriculture 2012, 12 (
1
): 31-42. DOI:
10.1016/S1671-2927(00)8521
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1686
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Based on sequencing of part clones in a root subtractive cDNA library, an expressed sequence tag (EST) sharing high similarity to a rice C2H2 zinc finger transcription factor (ZFP15) was obtained in wheat. Through bioinformatics approach, the wheat C2H2-type ZFP gene referred to TaZFP15 has been identified and characterized. As a full-length cDNA of 670 bp, TaZFP15 has an open reading frame of 408 bp and encodes a 135-aa polypeptide. TaZFP15 contains two C2H2 zinc finger domains and each one has a conserved motif QALGGH. The typical L-box, generally identified in the C2H2 type transcription factors, has also been found in TaZFP15. Phylogenetic analysis suggested that TaZFP15 shares high similarities with rice ZFP15 (GenBank accession no. AY286473), maize ZFP (GenBank accession no. NM_001159094) and a subset of other zinc-finger transcription factor genes in plant species. The expression of TaZFP15 was up-regulated by starved-Pi stress, showing a pattern to be gradually elevated along with the progression of the Pi-stress in a 23-h treatment regime. Similarly, the transcripts of TaZFP15 in roots were also induced by nitrogen deficiency, and abiotic stresses of drought and salinity. No responses of TaZFP15 were detected in roots to nutrition deficiencies of P, Zn, and Ca, and the external treatment of abscisic acid (ABA). TaZFP15 could be specifically amplified in genome A, B, and D, and without variability in the sequences, suggesting that TaZFP15 has multi-copies in the homologous hexaploid species. Transgenic analysis in tobacco revealed that up-regulation of TaZFP15 could significantly improve plant dry mass accumulation via increasing the plant phosphorus acquisition capacity under Pi-deficiency condition. The results suggested that TaZFP15 is involved in mediation of signal transductions of diverse external stresses.
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10.
Identification of Organic Substances Associated with Tissue Senescence in Upland Cotton (Gossypium spp. L.) Based on GC-MS Analysis
XU Zhen-long, GUO Cheng-jin, GU Jun-tao, LU Wen-jing, LI Xiao-juan, XIAO Kai
Journal of Integrative Agriculture 2011, 10 (
8
): 1197-1205. DOI:
10.1016/S1671-2927(11)60110-7
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2162
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Premature senescence in crop production, especially occurred at the late growth stage, generally results in a reduction inyield and quality. Therefore, it is beneficial for yield and quality to properly delay senescence of plant tissues during thelate developmental stage. In this study, it was observed that the chlorophyll content and photosynthetic rate weregradually decreased along leaf growth progression, and the rates of reduction were promoted by drought. Based on gaschromatography-mass spectrometry (GC-MS) analysis, total eight, five, seven, and five kinds of organic compounds thatputatively associated with the tissue senescent progression were identified in leaves, fruit branches, petals, and sepals,respectively. It was found that the identified organic compound, such as α-pinene, β-pinene, and pentadecane werepresent in different tissues. Among the total ten organic substances identified to be related with the leaf senescence, halfwere specifically detected in the drought treatment. These results suggest some biochemical pathways associated withthe leaf senescence are distinctly regulated by drought. The identified organic compounds in the tested tissues showedthree types on the performance pattern based on the contents along with the senescent progression, including graduallyincreasing, decreasing, and a curve with one single peak. Thus, during the senescence process in tissues, a subset ofmetabolic substances occur modifications on the quantities, reflecting a complicate biochemical reactions are initiated viathe senescence signals. Further analysis of the important organic substances will be helpful for elucidation of the tissuesenescence mechanism at the biochemical level and provide a new insight of the senescence signaling transductions incotton.
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