Analysis of MIKCC-Type MADS-Box Gene Family in Gossypium hirsutum

doi:10.1016/S2095-3119(13)60520-1

Journal of Integrative Agriculture ›› 2014, Vol. 13 ›› Issue (6): 1239-1249.DOI: 10.1016/S2095-3119(13)60520-1

Analysis of MIKCC-Type MADS-Box Gene Family in Gossypium hirsutum

JIANG Su-cheng, PANG Chao-you, SONG Mei-zhen, WEI Heng-ling, FAN Shu-li , YU Shu-xun

State Key Laboratory of Cotton Biology/Cotton Research Institute, Chinese Academy of Agricultural Sciences, Anyang 455000, P.R.China

收稿日期:2013-03-20 出版日期:2014-06-01 发布日期:2014-06-06
通讯作者: FAN Shu-li, Tel: +86-372-2562249, E-mail: fasl@cricaas.com.cn; YU Shu-xun, Tel: +86-372-2562201, Fax: +86-372-2562256, E-mail: yu@cricaas.com.cn
作者简介:JIANG Su-cheng, E-mail: suchengjiang@163.com
基金资助:
This work was supported by the National High-Tech R&D Program of China (2011AA10A102) and the Earmarked Fund for China Agriculture Research System (CARS-18).

Analysis of MIKCC-Type MADS-Box Gene Family in Gossypium hirsutum

JIANG Su-cheng, PANG Chao-you, SONG Mei-zhen, WEI Heng-ling, FAN Shu-li , YU Shu-xun

State Key Laboratory of Cotton Biology/Cotton Research Institute, Chinese Academy of Agricultural Sciences, Anyang 455000, P.R.China

Received:2013-03-20 Online:2014-06-01 Published:2014-06-06
Contact: FAN Shu-li, Tel: +86-372-2562249, E-mail: fasl@cricaas.com.cn; YU Shu-xun, Tel: +86-372-2562201, Fax: +86-372-2562256, E-mail: yu@cricaas.com.cn
About author:JIANG Su-cheng, E-mail: suchengjiang@163.com
Supported by:
This work was supported by the National High-Tech R&D Program of China (2011AA10A102) and the Earmarked Fund for China Agriculture Research System (CARS-18).

摘要/Abstract

摘要： MIKCC-type MADS-box genes encode transcription factors that are involved in plant developmental control and signal transduction. Few Gossypium hirsutum MADS-box genes have been reported thus far. Recently, the genome of Gossypium raimondii, considering the contributor of the D subgenome to G. hirsutum, was sequenced and provided a valuable resource to identify and analyze multiple MADS-box genes in G. hirsutum. Here we comprehensively analyzed 53 MIKCC-type MADSbox genes, including 34 newly cloned genes. Phylogenetic analysis of these genes with those from Arabidopsis and grapevine showed that the FLC and AGL12 subfamilies were absent in G. hirsutum. Proteins within a gene subfamily tended to share conserved motifs, and large differences occurred among subfamilies. Expression analysis in multiple tissues and floral organs implied differing roles for the subfamilies in G. hirsutum. At nine loci, two or three genes co-occurred, indicating that they came from different subgenomes; these groups had similar expression patterns. The identification of MIKCC-type MADSbox genes in G. hirsutum provides a valuable resource for further research into flowering time, flower development and ovule development in this important crop plant.

关键词: transcription factor , MIKCC-type , MADS-box , cotton

Abstract: MIKCC-type MADS-box genes encode transcription factors that are involved in plant developmental control and signal transduction. Few Gossypium hirsutum MADS-box genes have been reported thus far. Recently, the genome of Gossypium raimondii, considering the contributor of the D subgenome to G. hirsutum, was sequenced and provided a valuable resource to identify and analyze multiple MADS-box genes in G. hirsutum. Here we comprehensively analyzed 53 MIKCC-type MADSbox genes, including 34 newly cloned genes. Phylogenetic analysis of these genes with those from Arabidopsis and grapevine showed that the FLC and AGL12 subfamilies were absent in G. hirsutum. Proteins within a gene subfamily tended to share conserved motifs, and large differences occurred among subfamilies. Expression analysis in multiple tissues and floral organs implied differing roles for the subfamilies in G. hirsutum. At nine loci, two or three genes co-occurred, indicating that they came from different subgenomes; these groups had similar expression patterns. The identification of MIKCC-type MADSbox genes in G. hirsutum provides a valuable resource for further research into flowering time, flower development and ovule development in this important crop plant.

Key words: transcription factor , MIKCC-type , MADS-box , cotton

JIANG Su-cheng, PANG Chao-you, SONG Mei-zhen, WEI Heng-ling, FAN Shu-li , YU Shu-xun. Analysis of MIKCC-Type MADS-Box Gene Family in Gossypium hirsutum[J]. Journal of Integrative Agriculture, 2014, 13(6): 1239-1249.

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Analysis of MIKCC-Type MADS-Box Gene Family in Gossypium hirsutum

Analysis of MIKCC-Type MADS-Box Gene Family in Gossypium hirsutum

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