| [1]Alabadi D, Oyama T, Yanovsky M J, Harmon F G, M P,Kay S A. 2001. Reciprocal regulation between TOC1and LHY/CCA1 within the Arabidopsis circadian clock.Science, 293, 880-883.[2]Anderson L E, Goldhaber-Gordon I M, Li D, Tang X Y,XiangMH, Prakash N. 1995. Enzyme-enzyme interactionin the chloroplast: glyceraldehyde-3-phosphatedehydrogenase, triose phosphate isomerase andaldolase. Planta, 196, 245-255.[3]Bancos S, Szatmi AM, Castle J, Kozma-BognL, ShibataK,Yokota T, Bishop GJ, Nagy F, SzekeresM. 2006. Diurnalregulation of the brassinosteroid-biosynthetic CPD genein Arabidopsis. Plant Physiology, 141, 299-309.[4]Bisova K, Krylov D M, Umen J G. 2005. Genome-wideannotation and expression profiling of cell cycleregulatory genes in Chlamydomonas reinhardtii. PlantPhysiology, 137, 475-491.[5]Casper T. 1994. Genetic dissection of the biosynthesis,degradation, and biological functions of starch. In:Meyerowitz EM, Somerville C R, eds., Arabidopsis. ColdSpring Harbor Laboratory Press, USA. pp. 913-936.[6]Chandler J W, Apel K, Melzer S. 2001. A novel putative b-amylase gene and ATb-Amy from Arabidopsis thalianaare circadian regulated. Plant Science, 161, 1019-1024.[7]Covington M F, Maloof J N, Straume M, Kay S A, HarmerS L. 2008. Global transcriptome analysis reveals circadianregulation of key pathways in plant growth anddevelopment. Genome Biology, 9, 1-18.[8]Covington M F, Harmer S L. 2007. The circadian clockregulates auxin signaling and responses in Arabidopsis.PLoS Biology, 5, 1773-1784.[9]Day D A, Tuite M F. 1998. Post-transcriptional generegulatory mechanisms in eukaryotes: an overview.Journal of Endocrinology, 157, 361-371.[10]Devenish R J, Prescott M, Roucou X, Nagley P. 2000.Insights into ATP synthase assembly and functionthrough the molecular genetic manipulation of subunitsof the yeast mitochondrial enzyme complex. Biochimicaet Biophysica Acta, 1458, 428-442.[11]Dodd A N, Salathia N, Hall A, Kei E, Th R, Nagy F,Hibberd JM,MillarAJ,WebbAAR. 2005. Plant circadianclocks increase photosynthesis, growth, survival, andcompetitive advantage. Science, 309, 630-633.[12]Dodd A N, Griffiths H, Taybi T, Cushman J C, Borland A M.2003. Integrating diel starch metabolism with thecircadian and environmental regulation of crassulaceanacid metabolism in Mesembryanthemum crystallinum.Planta, 216, 789-797.[13]Donnelly B E, Madden R D, Ayoubi P, Porter D R, DillwithJ W. The wheat (Triticum aestivum L.) leaf proteome.Proteomics, 5, 1624-1633.[14]Dunlap J C. 1999. Molecular bases for circadian clocks.Cell, 96, 271-290.[15]Dunlap J C, Loros J J. 2004. The Neurospora circadiansystem. Journal of Biological Rhythms, 19, 414-424.[16]Emery P, Reppert S M. 2004. A rhythmic Ror. Neuron, 43,443-446.[17]Ghanotakis D F, Yocum C F. 1990. Photosystem II and theoxygen-evolving complex. Annual Review of PlantPhysiology and Plant Molecular Biology, 41, 255-276.[18]Graf A, Schlereth A, Stitt M, Smith A M. 2010. Circadiancontrol of carbohydrate availability for growth inArabidopsis plants at night. Proceedings of theNational Academy of Sciences of the United States ofAmerica, 107, 9458-9463.[19]Gross S P, Vershinin M, Shubeita G T. 2007. Cargo transport:two motors are sometimes better than one. CurrentBiology, 17, 478-486.[20]Harmer S L, Hogenesch J B, Straume M, Chang H S, Han B,Zhu T, Wang X, Kreps J A, Kay S A. 2000. Orchestratedtranscription of key pathways in Arabidopsis by thecircadian clock. Science, 290, 2110-2113.[21]Harmer S L. 2009. The circadian system in higher plants.Annual Review of Plant Biology, 60, 357-377.[22]Harms E, KivimS, Young M W, Saez L. 2004.Posttranscriptional and posttranslational regulation ofclock genes. Journal of Biological Rhythms, 19, 361-373.[23]Hayes K R, Beatty M, Meng X, Simmons C R, Habben J E,Danilevskaya O N. 2010. Maize global transcriptomicsreveals pervasive leaf diurnal rhythms but rhythms indeveloping ears are largely limited to the core oscillator.PLoS One, 5, e12887.Huang L M, Chen T H. 2003. Circadian rhythm of ATPcontens in Synechococcus RF-1.[24]BioFormosa, 38, 1-5.Hwang H, Cho M H, Hahn B S, Lim H, Kwon Y K, Hahn TR, Bhoo S H. 2011. Proteomic identification of rhythmicproteins in rice seedlings. Biochimica et BiophysicaActa, 1814, 470-479.[25]Jones P, Messner B, Nakajima J I, Schfner A R, Saito K.2003. UGT73C6 and UGT78D1, glycosyltransferasesinvolved in flavonol glycoside biosynthesis inArabidopsis thaliana. The Journal of BiologicalChemistry, 278, 43910-43918.[26]Jouve L, Kevers C, Greppin H, Gaspar T, Agosti R D. 1999.Involvement of indole-3-acetic acid in the circadiangrowth of the first internode of Arabidopsis.[27]Planta,209, 136-142.Keegan K P, Pradhan S, Wang J P, Allada R. 2007. Metaanalysisof Drosophila circadian microarray studiesidentifies a novel set of rhythmically expressed genes.PLoS Computational Biology, 3, 2087-2110.[28]Kreps J A, Kay SA. 1997. Coordination of plant metabolismand development by the circadian clock. The Plant Cell,9, 1235-1244.[29]Proteomic Identification of Rhythmic Proteins in Maize Seedling Leaves Kucho K, Okamoto K, Tsuchiya Y, Nomura S, Nango M,Kanehisa M, Ishiura M. 2005. Global analysis of circadianexpression in the Cyanobacterium synechocystis sp. strainPCC 6803. Journal of Bacteriology, 187, 2190-2199.[30]McClungm C R. Plant circadian rhythms. The Plant Cell,18, 792-803.[31]Mendoza M, Redemann S, Brunner D. 2005. The fission yeastMO25 protein functions in polar growth and cell separation.European Journal of Cell Biology, 84, 915-926.[32]Peirson S N, Butler J N, Duffield G E, Takher S, Sharma P,Foster R G. 2006. Comparison of clock gene expressionin SCN, retina, heart, and liver of mice. Biochemical andBiophysical Research Communications, 351, 800-807.[33]Perales M, Mas P. 2007. A functional link between rhythmicchanges in chromatin structure and the Arabidopsisbiological clock. The Plant Cell, 19, 2111-2123.[34]Porubleva L, Velden K V, Kothari S, Oliver D J, Chitnis P R.2001. The proteome of maize leaves: use of genesequences and expressed sequence tag data foridentification of proteins with peptide mass fingerprints.Electrophoresis, 22, 1724-1738.[35]Price G D, Evans J R, Caemmerer S V, Yu J W, Badger M R.1995. Specific reduction of chloroplast glyceraldehyde-3-phosphate dehydrogenase activity by antisense RNAreduces CO2 assimilation via a reduction in ribulosebisphosphate egeneration in transgenic tobacco plants.[36]Planta, 195, 369-378.Samach A, Coupland G. 2000. Time measurement and thecontrol of flowering in plants. Bioessays, 22, 38-47.[37]Schaffer R, Landgraf J, Accerbi M, Simon V, Larson M,Wisman E. 2001. Microarray analysis of diurnal andcircadian-regulated genes in Arabidopsis. The PlantCell, 13, 113-123.[38]Seung D, Risopatron J P, Jones B J, Marc J. 2011. Circadianclock-dependent gating in ABA signalling networks.Protoplasma, 249, 445-457.[39]ShinoharaML, Loros J J, Dunlap J C. 1998. Glyceraldehyde-3-phosphate dehydrogenase is regulated on a failybasis by the circadian clock. The Journal of BiologicalChemistry, 273, 446-452.[40]Smith S M, Fulton D C, Chia T, Thorneycroft D, Chapple A,Dunstan H, Hylton C, Zeeman S C, Smith A M. 2004.Diurnal changes in the transcriptome encoding enzymesof starch metabolism provide evidence for bothtranscriptional and posttranscriptional regulation ofstarch metabolism in Arabidopsis leaves. Plant Physiology,136, 2687-2699.[41]Steger D J, Haswell E S, Miller A L, Wente S R, Ohea E K.2003. Regulation of chromatin remodeling by inositolpolyphosphates. Science, 299, 114-116.[42]Swanson-Wagner R A, Jia Y, DeCook R, Borsuk L A,Nettleton D, Schnable P S. 2006. All possible modes ofgene action are observed in a global comparison ofgene expression in a maize F1 hybrid and its inbredparents. Proceedings of the National Academy of Sciencesof the United States of America, 103, 6805-6810.[43]Tsuji T, Hirota T, Takemori N, Komori N, Yoshitane H, FukudaM, Matsumoto H, Fukada Y. 2007. Circadian proteomicsof the mouse retina. Proteomics, 7, 3500-3508.[44]Urrea-Gomez R, Ceballos H, Pandey S, Bahia FilhoAF C, LeonLA. 1996. A greenhouse screening technique for acid soiltolerance in maize. Agronomy Journal, 88, 806-812.[45]Walla O J, Groot E J, Manfred S. 1994. On the molecularmechanism of the circadian clock: The 41 000 Mr clockprotein of Chlorella was identified as 3-phosphoglyceratekinase. Journal of Cell Science, 107, 719-726.[46]Yu T S, Kofler H, Hsler R E, Hille D, Flge U I, ZeemanS C, Smith A M, Kossmann J, Lloyd J, Ritte G, et al.2001. The Arabidopsis sex1 mutant is defective in theR1 protein, a general regulator of starch degradation inplants, and not in the chloroplast hexose transporter.The Plant Cell, 13, 1907-1918. |
