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1.
Identification of long-grain chromosome segment substitution line Z744 and QTL analysis for agronomic traits in rice
MA Fu-ying, DU Jie, WANG Da-chuan, WANG Hui, ZHAO Bing-bing, HE Guang-hua, YANG Zheng-lin, ZHANG Ting, WU Ren-hong, ZHAO Fang-ming
Journal of Integrative Agriculture 2020, 19 (
5
): 1163-1169. DOI:
10.1016/S2095-3119(19)62751-6
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118
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Length of grain affects the appearance, quality, and yield of rice. A rice long-grain chromosome segment substitution line Z744, with Nipponbare as the recipient parent and Xihui 18 as the donor parent, was identified. Z744 contains a total of six substitution segments distributed on chromosomes (Chrs.) 1, 2, 6, 7, and 12, with an average substitution length of 2.72 Mb. The grain length, ratio of length to width, and 1 000-grain weight of Z744 were significantly higher than those in Nipponbare. The plant height, panicle number, and seed-set ratio in Z744 were significantly lower than those in Nipponbare, but they were still 78.7 cm, 13.5 per plant, and 86.49%, respectively. Furthermore, eight QTLs of different traits were identified in the secondary F
2
population, constructed by Nipponbare and Z744 hybridization. The grain weight of Z744 was controlled by two synergistic QTLs (
qGWT1
and
qGWT7
) and two subtractive QTLs (
qGWT2
and
qGWT6
), respectively. The increase in the grain weight of Z744 was caused mainly by the increase in grain length. Two QTLs were detected,
qGL1
and
qGL7-3
, which accounted for 25.54 and 15.58% of phenotypic variation, respectively. A Chi-square test showed that the long-grain number and the short-grain number were in accordance with the 3:1 separation ratio, which indicates that the long grain is dominant over the short-grain and Z744 was controlled mainly by the principal effect
qGL1
. These results offered a good basis for further fine mapping of
qGL1
and further dissection of other QTLs into single-segment substitution lines.
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2.
Effects of urea enhanced with different weathered coal-derived humic acid components on maize yield and fate of fertilizer nitrogen
ZHANG Shui-qin, YUAN Liang, LI Wei, LIN Zhi-an, LI Yan-ting, HU Shu-wen, ZHAO Bing-qiang
Journal of Integrative Agriculture 2019, 18 (
3
): 656-666. DOI:
10.1016/S2095-3119(18)61950-1
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Humic acid (HA) is a readily available and low-cost material that is used to enhance crop production and reduce nitrogen (N) loss. However, there is little consensus on the efficacy of different HA components. In the current study, a soil column experiment was conducted using the 15N tracer technique in Dezhou City, Shandong Province, China, to compare the effects of urea with and without the addition of weathered coal-derived HA components on maize yield and the fate of fertilizer-derived N (fertilizer N). The HA components were incorporated into urea by blending different HA components into molten urea to obtain the three different types of HA-enhanced urea (HAU). At harvest, the aboveground dry biomass of plants grown with HAU was enhanced by 11.50–21.33% when compared to that of plants grown with U. More significantly, the grain yields under the HAU treatments were 5.58–18.67% higher than the yield under the urea treatment. These higher yields were due to an increase in the number of kernels per plant rather than the weight of individual kernels. The uptake of fertilizer N under the HAU treatments was also higher than that under the urea treatment by 11.49–29.46%, while the unaccounted N loss decreased by 12.37–30.05%. More fertilizer-derived N was retained in the 0–30 cm soil layer under the HAU treatments than that under the urea treatment, while less N was retained in the 30–90 cm soil layer. The total residual amount of fertilizer N in the soil column, however, did not differ significantly between the treatments. Of the three HAU treatments investigated, the one with an HA fraction derived from extraction with pH values ranging from 6 to 7, resulted in the best improvement in all assessment targets. This is likely due to the abundance of the COO/C–N=O group in this HA component.
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3.
Identification of SNPs and expression patterns of
FZD3
gene and its effect on wool traits in Chinese Merino sheep (Xinjiang Type)
ZHAO Bing-ru, FU Xue-feng, TIAN Ke-chuan, HUANG Xi-xia, DI Jiang, BAI Yan, XU Xin-ming, TIAN Yue-zhen, WU Wei-wei, ABLAT Sulayman, ZENG Wei-dan, HANIKEZI Tulafu
Journal of Integrative Agriculture 2019, 18 (
10
): 2351-2360. DOI:
10.1016/S2095-3119(19)62735-8
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153
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As a member of the Frizzled family, Frizzled3 (
FZD3
) is a receptor of the canonical Wnt signaling pathway and plays a vital role in mammalian hair follicle developmental processes. However, its effects on wool traits are not clear. The objectives of this study were to identify the single nucleotide polymorphisms (SNPs) and the expression patterns of
FZD3
gene, and then to determine whether it affected wool traits of Chinese Merino sheep (Xinjiang Type) or not. PCR-single stranded conformational polymorphism (PCR-SSCP) and sequencing were used to identify mutation loci, and general linear model (GLM) with SAS 9.1 was used for the association analysis between wool traits and SNPs. Quantitative real-time PCR (qRT-PCR) was used to investigate
FZD3
gene expression levels. The results showed that six exons of
FZD3
gene were amplified and two mutation loci were identified in exon 1 (NC_019459.2: g.101771685 T>C (SNP1)) and exon 3 (NC_019459.2: g.101810848, A>C (SNP2)), respectively. Association analysis showed that SNP1 was significantly associated with mean fiber diameter (MFD) (
P
=0.04) and live weight (LW) (
P
=0.0004), SNP2 was significantly associated with greasy fleece weight (GFW) (
P
=0.04). The expression level of
FZD3
gene in skin tissues of the superfine wool (SF) group was significantly lower (
P
<0.05) than that of the fine wool (F) group. Moreover, it had a higher expression level (
P
<0.01) in skin tissues than in other tissues of Chinese Merino ewes. While, its expression level had a fluctuant expression in skin tissues at different developmental stages of embryos and born lambs, with the highest expression levels (
P
<0.01) at the 65th day of embryos. Our study revealed the genetic relationship between
FZD3
variants and wool traits and two identified SNPs might serve as potential and valuable genetic markers for sheep breeding and lay a molecular genetic foundation for sheep marker-assisted selection (MAS).
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4.
Nutrient uptake requirements with increasing grain yield for rice in China
CHE Sheng-guo, ZHAO Bing-qiang, LI Yan-ting, YUAN Liang, LIN Zhi-an, HU Shu-wen, SHEN Bing
Journal of Integrative Agriculture 2016, 15 (
4
): 907-917. DOI:
10.1016/S2095-3119(15)61143-1
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Improved estimates of nutrient requirements for rice (
Oryza sativa
L.) in China are essential to optimize fertilization regulation for increasing grain yields and reducing the potential of environmental negative influences, especially under high-yielding intensive systems. A database involving rice grain yields, nutrient concentrations and accumulations collected from on-field station experiments in the literatures published from 2000 to 2013 in China was developed to understand the relationships between grain yields and plant nutrient uptakes, and to quantify nutrient requirements for different yield levels. Considering all data sets, rice grain yield ranged from 1.4 to 15.2 t ha
–1
with the mean value of 7.84 t ha
–1
, and ca. 10.4% of yield observations were higher than the yield barrier level of 10 t ha
–1
. N requirement to produce one ton grain was 21.10 kg for the yield range <4.0 t ha
–1
with a high variation of 45.8%. Except of the yield range <4.0 t ha
–1
, the values of N requirement, firstly increased from 18.78 kg for yield range 4.0–5.5 t ha
–1
to 20.62 kg for yield range 7.0–8.5 t ha
–1
, then decreased slightly to 19.67 and 19.17 kg for the yield range 8.5–10 and >10 t ha
–1
, respectively. Phosphorus (P) and potassium (K) requirements showed increasing trends, from 3.51 and 19.87 kg per t grain for <4.0 t ha
–1
yield range to 4.10 and 21.70 kg for >10.0 t ha
–1
range. In conclusion, nutrient requirement varied with increasement of grain yield, and N, P and K presented various response trends, increasing, declining or stagnating, which would be of great benefit for improving fertilizer strategies.
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5.
Enhanced resistance to Botrytis cinerea and Rhizoctonia solani in transgenic broccoli with a Trichoderma viride endochitinase gene
YU Ya, ZHANG Lei, LIAN Wei-ran, XU Feng-feng, LI Shuang-tao, XIANG Juan, ZHANG Guo-zhen, HU Zan-min, ZHAO Bing, REN Shu-xin, GUO Yang-dong
Journal of Integrative Agriculture 2015, 14 (
3
): 430-437. DOI:
10.1016/S2095-3119(14)60919-9
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2010
)
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A endochitinase gene (Tch) from the fungus Trichoderma viride was introduced into broccoli (Brassica oleracea var. italica) by Agrobacterium-mediated transformation. Sixty-eight putative transformants were obtained and the presence of the Tch gene was confirmed by both PCR and Southern blot analysis. RT-PCR analysis showed an accumulation of the transcript encoding the endochitinase protein in the transgenic plants. Using real-time quantitative PCR, the expression profiling of endochitinase gene was analyzed. Primary transformants and selfed progeny were examined for expression of the endochitinase using a fluorometric assay and for their resistance to the pathogenic fungi Botrytis cinerea and Rhizoctonia solani. The endochitinase activities in T0 in vitro plants, T0 mature plants and T1 mature plants were correlated with leaf lesions, and the transgenic line T618 had high endochitinse activities of 102.68, 114.53 and 120.27 nmol L–1 MU min–1 mg–1 protein in the three kinds of plants, respectively. The endochitinase activity showed a positive correlation with the resistance to the pathogens. Most transgenic T0 broccoli had increased resistance to the pathogens of B. cinerea and R. solani in leaf assays and this resistance was confirmed to be inheritable. These findings suggested that expression of the Tch gene from T. viride could enhance resistance to pathogenic fungi in Brassica species.
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6.
An asymmetric membrane of polyimide 6FDA-BDAF and its pervaporation desulfurization for n-heptane/thiophene mixtures
YANG Xiang-dong, YE Hong, LI Yan-ting, LI Juan, LI Ji-ding, ZHAO Bing-qiang, LIN Yang-zheng
Journal of Integrative Agriculture 2015, 14 (
12
): 2529-2537. DOI:
10.1016/S2095-3119(15)61213-8
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1328
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Polyimide (PI) is a type of important membrane material. A soluble polymer was synthesized from 4,4´-(hexafluoroisopropylidene) diphthalic anhydride (6FDA) and 2,2-bis[4-(4-aminophenoxy) phenyl] hexafluoropropane (BDAF) by the two-step polymerization method. The polymer was proved to be polyimide 6FDA-BDAF by the Fourier transform infrared (FT-IR), the 1H-NMR and 19F-NMR spectra. An asymmetric membrane was prepared with the synthesized polyimide 6FDA-BDAF, it was porous in the 50 μm height bulk and dense in a 3–5 μm height surface. The membrane was used to separate n-heptane/ thiophene mixtures by pervaporation with sulfur (S) contents from 50 to 900 μg g–1. The total flux was enlarged from 7.96 to 37.61 kg m–2 h–1 with temperature increasing from 50 to 90°C. The membrane’s enrichments factor for thiophene were about 3.13 and dependent on the experimental conditions. The experimental results demonstrated that polyimide 6FDA-BDAF would be a potential membrane material for desulfurization and controlled release of the S-containing fertilizer.
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7.
Microbial community structure and functional metabolic diversity are associated with organic carbon availability in an agricultural soil
LI Juan, LI Yan-ting, YANG Xiang-dong, ZHANG Jian-jun, LIN Zhi-an, ZHAO Bing-qiang
Journal of Integrative Agriculture 2015, 14 (
12
): 2500-2511. DOI:
10.1016/S2095-3119(15)61229-1
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2216
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Exploration of soil environmental characteristics governing soil microbial community structure and activity may improve our understanding of biogeochemical processes and soil quality. The impact of soil environmental characteristics especially organic carbon availability after 15-yr different organic and inorganic fertilizer inputs on soil bacterial community structure and functional metabolic diversity of soil microbial communities were evaluated in a 15-yr fertilizer experiment in Changping County, Beijing, China. The experiment was a wheat-maize rotation system which was established in 1991 including four different fertilizer treatments. These treatments included: a non-amended control (CK), a commonly used application rate of inorganic fertilizer treatment (NPK); a commonly used application rate of inorganic fertilizer with swine manure incorporated treatment (NPKM), and a commonly used application rate of inorganic fertilizer with maize straw incorporated treatment (NPKS). Denaturing gradient gel electrophoresis (DGGE) of the 16S rRNA gene was used to determine the bacterial community structure and single carbon source utilization profiles were determined to characterize the microbial community functional metabolic diversity of different fertilizer treatments using Biolog Eco plates. The results indicated that long-term fertilized treatments significantly increased soil bacterial community structure compared to CK. The use of inorganic fertilizer with organic amendments incorporated for long term (NPKM, NPKS) significantly promoted soil bacterial structure than the application of inorganic fertilizer only (NPK), and NPKM treatment was the most important driver for increases in the soil microbial community richness (S) and structural diversity (H). Overall utilization of carbon sources by soil microbial communities (average well color development, AWCD) and microbial substrate utilization diversity and evenness indices (H’ and E) indicated that long-term inorganic fertilizer with organic amendments incorporated (NPKM, NPKS) could significantly stimulate soil microbial metabolic activity and functional diversity relative to CK, while no differences of them were found between NPKS and NPK treatments. Principal component analysis (PCA) based on carbon source utilization profiles also showed significant separation of soil microbial community under long-term fertilization regimes and NPKM treatment was significantly separated from the other three treatments primarily according to the higher microbial utilization of carbohydrates, carboxylic acids, polymers, phenolic compounds, and amino acid, while higher utilization of amines/amides differed soil microbial community in NPKS treatment from those in the other three treatments. Redundancy analysis (RDA) indicated that soil organic carbon (SOC) availability, especially soil microbial biomass carbon (Cmic) and Cmic/SOC ratio are the key factors of soil environmental characteristics contributing to the increase of both soil microbial community structure and functional metabolic diversity in the long-term fertilization trial. Our results showed that long-term inorganic fertilizer and swine manure application could significantly improve soil bacterial community structure and soil microbial metabolic activity through the increases in SOC availability, which could provide insights into the sustainable management of China’s soil resource.
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8.
Review grain yield and nitrogen use efficiency in rice production regions in China
CHE Sheng-guo, ZHAO Bing-qiang, LI Yan-ting, YUAN Liang, LI Wei, LIN Zhi-an, HU Shu-wen, SHEN Bing
Journal of Integrative Agriculture 2015, 14 (
12
): 2456-2466. DOI:
10.1016/S2095-3119(15)61228-X
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1587
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As one of the staple food crops, rice (Oryza sativa L.) is widely cultivated across China, which plays a critical role in guaranteeing national food security. Most previous studies on grain yield or/and nitrogen use efficiency (NUE) of rice in China often involved site-specific field experiments, or small regions with insufficient data, which limited the representation for the current rice production regions. In this study, a database covering a wide range of climate conditions, soil types and field managements across China, was developed to estimate rice grain yield and NUE in various rice production regions in China and to evaluate the relationships between N rates and grain yield, NUE. According to the database for rice, the values of grain yield, plant N accumulation, N harvest index (HIN), indigenous N supply (INS), internal N efficiency (IEN), reciprocal internal N efficiency (RIEN), agronomic N use efficiency (AEN), partial N factor productivity (PEPN), physiological N efficiency (PEN), and recover efficiency of applied N (REN) averaged 7.69 t ha–1, 152 kg ha–1, 0.64 kg kg–1, 94.1 kg kg–1, 53.9 kg kg–1, 1.98 kg kg–1, 12.6 kg kg–1, 48.6 kg kg–1, 33.8 kg kg–1, and 39.3%, respectively. However, the corresponding values all varied tremendously with large variation. Rice planting regions and N rates had significant influence on grain yield, N uptake and NUE values. Considering all observations, N rates of 200 to 250 kg ha–1 commonly achieved higher rice grain yield compared to less than 200 kg N ha–1 and more than 250 kg N ha–1 at most rice planting regions. At N rates of 200 to 250 kg ha–1, significant positive linear relationships were observed between rice grain yield and AEN, PEN, REN, IEN, and PFPN, and 46.49, 24.64, 7.94, 17.84, and 88.24% of the variation in AEN, PEN, REN, IEN, and PFPN could be explained by grain yield, respectively. In conclusion, in a reasonable range of N application, an increase in grain yield can be achieved accompanying by an acceptable NUE.
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9.
Simulation of water and nitrogen dynamics as affected by drip fertigation strategies
ZHANG Jian-jun, LI Jiu-sheng, ZHAO Bing-qiang, LI Yan-ting
Journal of Integrative Agriculture 2015, 14 (
12
): 2434-2445. DOI:
10.1016/S2095-3119(15)61231-X
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1513
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The aim of drip fertigation is synchronising the application of water and nutrients with crop requirements, and maintaining the proper concentration and distribution of nutrient and water in the soil. The wetting patterns and nutrient distributions under drip fertigation have been proved to be closely related to the fertigation strategies. In order to find out the critical factors that affect the nutrient distribution under different drip fertigaiton strategies, a computer simulation model HYDRUS2D/3D was used to simulate the water and nitrate distribution for various fertigation strategies from a surface point source. Simulation results were compared with the observed ones from our previous studies. A 15° wedge-shaped plexiglass container was used in our experiment to represent one-twenty-fourth of the complete cylinder. The height of container is 40 cm, and the radius is 41 cm. The ammonium nitrate solution was added through a no. 7 needle connected to a Mariotte tube with a flexible hose. The soil water content, nitrate and ammonium concentrations were measured. The comparison of simulated and observed data demonstrated that the model performed reliably. The numerical analysis for various fertigation strategies from a surface point source showed that: (1) The total amount of irrigation water, the concentration of the fertilizer solution and the amount of pure water used to flush the pipeline after fertilizer solution application are the three critical factors influencing the distribution of water and fertilizer nitrogen in the soil. (2) The fresh water irrigation duration prior to fertigation has no obvious effect on nitrate distribution. The longer flushing time period after fertigation resulted in nitrate accumulation closer to the wetting front. From the point of avoiding the possibility of nitrate loss from the root zone, we recommended that the flushing time period should be as shorter as possible. (3) For a given amount of fertilizer, higher concentration of the fertilizer applied solution reduces the potential of nitrate leaching in drip irrigation system. While, lower concentration of the fertilizer solution resulted in an uniform distribution of nitrate band closer to the wetted front.
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10.
The Responses of Morphological Trait, Leaf Ultrastructure, Photosynthetic and Biochemical Performance of Tomato to Differential Light Availabilities
FU Qiu-shi, ZHAO Bing, WANG Xue-wen, WANG Yu-jue, REN Shu-xin , GUO Yang-dong
Journal of Integrative Agriculture 2011, 10 (
12
): 1887-1897. DOI:
10.1016/S1671-2927(11)60189-2
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The whole-plant morphology, leaf ultrastructure, photosynthesis as well as enzyme activities of two tomato cultivars (Meifen-2 and Hongsheng) to differential light availabilities (450-500 μmol m-2 s-1, 75-100 μmol m-2 s-1) were examined in controlled environment. The results showed that the plant biomass and root/shoot ratio decreased and the specific leaf area increased significantly under the low light condition. There was a significant increase in malondialdehyde (MDA) concentration, superoxide dismutase (SOD) and peroxidase (POD) activities and decrease in soluble sugar and protein contents in LL-grown plants. For both cultivars, downregulation of photosynthesis and electron transport components were observed in LL-grown plants, the inhibition of the photosynthesis under the LL condition could be partially explained by the decrease of stomata density and by the changes of chloroplast.
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