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1. 中麦578/济麦22群体产量相关性状基因定位
LIU Dan, ZHAO De-hui, ZENG Jian-qi, Rabiu Sani SHAWAI, TONG Jing-yang, LI Ming, LI Fa-ji, ZHOU Shuo, HU Wen-li, XIA Xian-chun, TIAN Yu-bing, ZHU Qian, WANG Chun-ping, WANG De-sen, HE Zhong-hu, LIU Jin-dong, ZHANG Yong
Journal of Integrative Agriculture    2023, 22 (7): 1985-1999.   DOI: 10.1016/j.jia.2022.12.002
摘要301)      PDF    收藏

发掘稳定的数量性状位点(Quantitative trait lociQTL,并开发其紧密连锁分子标记进一步提高小麦产量的重要途径本研究以中麦578/济麦22重组自交系(Recombinant inbreed linesRIL)群体262个家系为材料,通过调查两年五个环境千粒重、粒长、粒宽、平均灌浆速率、穗粒数和株高共六个产量相关性状利用50K SNP芯片基因型分析数据,构建了含有1501bin标记的遗传连锁图谱,图谱总长度2384.95 cM。利用完备区间作图法,在1D2、2A9、2B6、2D、3A2、3B2、4A5、4D、5B8、5D2、7A7、7B3)和7D5染色体上共定位到53个产量相关QTL,可解释表型变异的2.7–25.5%其中23QTL可在3个以上环境定位到,表现稳定;QKl.caas-2A.1QKl.caas-7DQKw.caas-7DQGfr.caas-2B.1QGfr.caas-4AQGfr.caas-7AQPh.caas-2A.17QTL可能是新的位点。定位到的一因多效QTL共形成六个富集区段(R1–R6),分别包含2–6QTL,位于2A2B4A5B7A7D染色体TaSus2-2BWAPO-A1分别是位于2B7A染色体上一因多效QTL的候选基因。7D染色体上的QTL富集区段内含有4个稳定QTL,分别控制千粒重、粒长、粒宽和株高,利用与其紧密连锁的侧翼标记,开发了KASP标记,在自然群体中对其效应进行了验证。本研究结果为小麦高产育种和中麦578的进一步改良提供基因和分子标记

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2. QTL mapping of seedling biomass and root traits under different nitrogen conditions in bread wheat (Triticum aestivum L.)
YANG Meng-jiao, WANG Cai-rong, Muhammad Adeel HASSAN, WU Yu-ying, XIA Xian-chun, SHI Shu-bing, XIAO Yong-gui, HE Zhong-hu
Journal of Integrative Agriculture    2021, 20 (5): 1180-1192.   DOI: 10.1016/S2095-3119(20)63192-6
摘要184)      PDF    收藏

苗期根系的氮素吸收与利用效率是决定植株生长发育及产量收益的关键因素,研究氮肥调控下小麦苗期根系生物量及其相关形态学的遗传调控对培育高产稳产小麦品种具有重要意义。本研究利用扬麦16/中麦895构建的DH群体,分别在硝酸钙浓度为0 mmol L−1(空白对照)、0.05 mmol L−1(低氮)、2.0 mmol L−1(高氮)3个梯度下进行液体培养,对4个根系生物量相关性状和5个根系结构性状进行基因定位,及连锁标记遗传转化研究。结果表明,不同氮肥处理与基因型间存在显著差异,根系生物量相关性状与结构性状间呈显著正相关,范围在0.20-0.98。基于全基因组660K SNP高密度遗传图谱,共定位到51个调控根系性状QTL,主要分布在12个根系性状调控基因富集区。并发掘出12个受氮肥调控影响的根系性状新基因,包括1AL染色体上携带受0氮调控的1个基因、1DS携带受高氮调控2个、4BL携带受高氮和低氮调控5个、7DS和7DL分别携带受低氮调控的3个和1个基因。4DS染色体上与Rht-D1 基因临近区域携带有控制根系性状且遗传表现稳定的基因QRRS.caas-4DS,解释表型变异为13.1%。12个根系性状基因富集区包括28个QTL位点,其中6BL和7BL染色体上的两个富集区C10和C11较为重要,主要控制根系干重、根表面积和幼苗干重等性状,连锁标记AX-109558906-6B和AX-95025477-7B已转化成育种可用的KASP标记。本研究发掘的QTL位点、QTL富集区及开发的KASP标记将有助于小麦育种工作中的苗期根系性状遗传改良。


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3. Characterization of TaCOMT genes associated with stem lignin content in common wheat and development of a gene-specific marker
FU Lu-ping, XIAO Yong-gui, YAN Jun, LIU Jin-dong, WEN Wei-e, ZHANG Yong, XIA Xian-chun, HE Zhong-hu
Journal of Integrative Agriculture    2019, 18 (5): 939-947.   DOI: 10.1016/S2095-3119(18)61958-6
摘要949)      PDF    收藏
Stem lignin content (SLC) in common wheat (Triticum aestivum L.) contributes to lodging resistance.  Caffeic acid 3-O-methyltransferase (COMT) is a key enzyme involved in lignin biosynthesis.  Characterization of TaCOMT genes and development of gene-specific markers could enable marker-assisted selection in wheat breeding.  In the present study, the full-length genomic DNA (gDNA) sequences of TaCOMT genes located on chromosomes 3A, 3B, and 3D were cloned by homologous cloning.  Two allelic variants, TaCOMT-3Ba and TaCOMT-3Bb, were identified and differed by a 222-bp insertion/deletion (InDel) in the 3´-untranslated region (3´-UTR).  A co-dominant gene-specific marker based on this InDel was developed and designated as TaCOMT-3BM.  A total of 157 wheat cultivars and advanced lines grown in four environments were used to validate the associations between allelic patterns and SLC.  The SLC of cultivars with TaCOMT-3Ba was significantly (P<0.01) higher than that of those with TaCOMT-3Bb, and the marker TaCOMT-3BM could be effectively used in wheat breeding.
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4. Identification of a new stripe rust resistance gene in Chinese winter wheat Zhongmai 175
LU Jia-ling, CHEN Can, LIU Peng, HE Zhong-hu, XIA Xian-chun
Journal of Integrative Agriculture    2016, 15 (11): 2461-2468.   DOI: 10.1016/S2095-3119(16)61379-5
摘要1264)      PDF    收藏
Stripe rust is a serious foliar disease posing a grave threat to wheat production worldwide.  The most economical and environmentally friendly way to control this disease is to breed and deploy resistant cultivars.  Zhongmai 175 is an elite winter wheat cultivar conferring resistance to a broad spectrum of Puccinia striiformis f. sp. tritici (Pst) races.  To identify the resistance gene in the cultivar, genetic analysis was conducted using the parents, F1, F2 and F2:3 populations derived from the cross of Lunxuan 987/Zhongmai 175.  Segregations in the F2 and F2:3 populations indicated a single dominant gene conferring resistance to stripe rust in Zhongmai 175, temporarily designated YrZM175.  Bulked segregant analysis (BSA) with wheat iSelect 90K SNP array determined a preliminary location of YrZM175.  Subsequently, YrZM175 was mapped on chromosome 2AS using simple sequence repeats (SSR), expressed sequence tags (EST) and newly-developed kompetitive allele specific PCR (KASP) markers, being flanked by Xgwm636 and Xwmc382 at genetic distances of 4.9 and 8.1 cM, respectively.  Comparison of reaction patterns of YrZM175 on 23 Pst races or isolates and pedigree analysis with other genes on chromosome 2AS suggested that it is likely to be a new gene for resistance to stripe rust.  The resistance gene and linked molecular markers will be useful in wheat breeding targeting for the improvement of stripe rust resistance.
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5. QTL Mapping for Adult Plant Resistance to Powdery Mildew in Italian Wheat cv. Strampelli
Asad Muhammad Azeem, BAI Bin, LAN Cai-xia, YAN Jun, XIA Xian-chun, ZHANG Yong , HE Zhong-hu
Journal of Integrative Agriculture    2013, 12 (5): 756-764.   DOI: 10.1016/S2095-3119(13)60297-X
摘要1385)      PDF    收藏
The Italian wheat cv. Strampelli displays high resistance to powdery mildew caused by Blumeria graminis f. sp. tritici. The objective of this study was to map quantitative trait loci (QTLs) for resistance to powdery mildew in a population of 249 F2:3 lines from Strampelli/Huixianhong. Adult plant powdery mildew tests were conducted over 2 yr in Beijing and 1 yr in Anyang and simple sequence repeat (SSR) markers were used for genotyping. QTLs Qpm.caas-3BS, Qpm.caas-5BL.1, and Qpm.caas-7DS were consistent across environments whereas, Qpm.caas-2BS.1 found in two environments, explained 0.4-1.6, 5.5-6.9, 27.1-34.5, and 1.0-3.5% of the phenotypic variation respectively. Qpm.caas-7DS corresponded to the genomic location of Pm38/Lr34/Yr18. Qpm.caas-4BL was identified in Anyang 2010 and Beijing 2011, accounting for 1.9-3.5% of phenotypic variation. Qpm.caas-2BS.1 and Qpm.caas-5BL.1 contributed by Strampelli and Qpm.caas-3BS by Huixianhong, seem to be new QTL for powdery mildew resistance. Qpm.caas-4BL, Qpm.caas-5BL.3, and Qpm.caas-7DS contributed by Strampelli appeared to be in the same genomic regions as those mapped previously for stripe rust resistance in the same population, indicating that these loci conferred resistance to both stripe rust and powdery mildew. Strampelli could be a valuable genetic resource for improving durable resistance to both powdery mildew and stripe rust in wheat.
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6. Mapping of Quantitative Trait Loci for Adult Plant Resistance to Stripe Rust in German Wheat Cultivar Ibis 
BAI Bin, REN Yan, XIA Xian-chun, DU Jiu-yuan, ZHOU Gang, WU Ling, ZHU Hua-zhong, HEZhong-hu, WANG Cheng-she
Journal of Integrative Agriculture    2012, 12 (4): 528-536.   DOI: 10.1016/S1671-2927(00)8572
摘要2188)      PDF    收藏
The German wheat cultivar Ibis has excellent adult plant resistance (APR) to stripe rust in Gansu, a hotspot for stripe rust in China. To elucidate the genetic basis of APR to stripe rust in Ibis, 237 F3 lines derived from the cross Ibis/Huixianhong were evaluated at Tianshui, Gansu, in the 2008-2009 and 2009-2010 cropping seasons, and at Chengdu, Sichuan Province, China, in the 2009-2010 cropping season. Inoculations were conducted with a mixture of several prevalent Pst races in both locations. Maximum disease severity (MDS) data showed a continuous distribution of response, indicating quantitative nature of resistance to stripe rust in Ibis. The broad-sense heritability of MDS was 0.75 based on the mean values averaged across three environments. A total of 723 simple sequence repeat (SSR) markers were used to map the QTL for APR by inclusive composite interval mapping (ICIM). QTLs mapping to chromosomes 2BS and 6BS, designated as QYr.caas-2BS.1 and QYr.caas-6BS.1, respectively, explained 4.1-40.7% of the phenotypic variance in MDS across environments. The major effect QTL QYr.caas-2BS.1, flanked by Xgwm148 and Xwmc360, was consistently detected at all three sites as well as the averaged data over three environments, accounting for 40.7, 24.2, 5.2 and 29.9% of phenotypic variance, respectively. The molecular markers closely linked to this QTL have potential for use in marker-assisted selection and gene pyramiding to improve the durability of stripe rust resistance in wheat breeding.
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7. 小麦5BS染色体粒长QTL的精细定位及候选基因分析
ZENG Jian-qi, ZHAO De-hui, YANG Li, YANG Yu-feng, LIU Dan, TIAN Yu-bing, WANG Feng-ju, CAO Shuang-he, XIA Xian-chun, HE Zhong-hu, ZHANG Yong
Journal of Integrative Agriculture    DOI: 10.1016/j.jia.2024.04.033
录用日期: 2024-05-24