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1. Transcriptomic insights into growth promotion effect of Trichoderma afroharzianum TM2-4 microbial agent on tomato plants
ZHAO Juan, LIU Ting, LIU Wei-cheng, ZHANG Dian-peng, DONG Dan, WU Hui-ling, ZHANG Tao-tao, LIU De-wen
Journal of Integrative Agriculture    2021, 20 (5): 1266-1276.   DOI: 10.1016/S2095-3119(20)63415-3
摘要157)      PDF    收藏

植物促生真菌具有产生生物活性物质、促进植物生长以及增强植物免疫抗性的能力,其作为有应用价值的有益微生物在作物栽培中受到越来越多关注。本研究从健康番茄植株根际土壤中分离筛选到一株木霉菌株TM2-4,将其鉴定为非洲哈茨木霉(Trichoderma afroharzianum)。菌株TM2-4发酵滤液中含有多种生物活性物质且对番茄种子发芽具有明显促进作用,发酵滤液100倍稀释液处理,番茄胚轴、胚根长度,种子活力指数分别增加28.7%、19.4% 和 62.1%。为了评价菌株TM2-4的促生作用及其相关机制,通过盆栽试验和转录组测序分析了非洲哈茨木霉菌制剂TM2-4处理对番茄植株生物学指标和基因表达型的影响。结果表明,非洲哈茨木霉TM2-4能够通过在植株根际土壤和根系有效定殖,显著提高番茄株高、干重、单株叶片数及根系活力等生物学指标。转录组分析发现,木霉菌制剂处理番茄根系较对照共获得984个差异表达基因,主要集中在激素平衡、抗氧化活性以及苯丙烷类生物合成和谷胱甘肽代谢等生物学过程。相关研究结果为阐明菌株TM2-4对番茄的促生作用机制提供有效信息,并为非洲哈茨木霉微生物菌剂在蔬菜作物生产中的进一步开发应用奠定理论基础。


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2.
Molecular and biological characterization of melon-infecting squash leaf curl China virus in China 
WU Hui-jie, LI Meng, HONG Ni, PENG Bin, GU Qin-sheng
Journal of Integrative Agriculture    2020, 19 (2): 570-577.   DOI: 10.1016/S2095-3119(19)62642-0
摘要171)      PDF    收藏
It has been reported that squash leaf curl China virus (SLCCNV) infects some Cucurbitaceae crops except for melon (Cucumis melo L.).  A new disease of melon exhibiting severe leaf curl and dwarfing was observed in Hainan Province of China.  In this study, the pathogen was identified as SLCCNV through biological and molecular characterization.  The isolate (SLCCNV-HN) possess a bipartite genome, DNA-A (HM566112.1) with the highest nucleotide identity (99%) to SLCCNV-Hn (MF062251.1) pumpkin and SLCCNV-Hn61 (AM260205.1) squash isolates from China, whereas DNA-B (HM566113.1) with the highest nucleotide identity (99%) to SLCCNV-Hn (MF062252.1).  Phylogenetic analyses based on the full-length SLCCNV-HN DNA-A and -B sequences indicated that SLCCNV-HN melon isolate is clustered with SLCCNV-Hn pumpkin, SLCCNV-Hn61 and SLCCNV-SY squash isolates from southern China, forming an independent cluster.  Infectious clone of SLCCNV-HN was constructed and the melon plants were inoculated and the infection rate is 100%, the systemic symptoms in melon showed identical to those of melon plants infected in fields.  Additionally, melon plants transmission of this virus by Bemisia tabaci with a transmission rate of 95% (19/20) showed leaf curl and dwarf symptoms 15 days post transmission, thereby fulfilling Koch’s postulates.  Analysis of genomic organization and phylogenetic trees indicated that SLCCNV-HN melon isolate belongs to the Begomovirus genus.  To the best of our knowledge, this is the first characterization of melon-infecting SLCCNV through its genome, infectious clone and transmission.
 
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3. Mapping subgenomic promoter of coat protein gene of Cucumber green mottle mosaic virus
LIU Mei, LIU Li-ming, WU Hui-jie, KANG Bao-shan, GU Qin-sheng
Journal of Integrative Agriculture    2020, 19 (1): 153-163.   DOI: 10.1016/S2095-3119(19)62647-X
摘要136)      PDF    收藏
Many plant viruses utilize subgenomic RNA as gene expression strategy, therefore mapping subgenomic promoter (SGP) is extremely important for constructing viral vectors.  Although Cucumber green mottle mosaic virus (CGMMV)-based virus vectors have been constructed, SGP of the coat protein (CP) has not yet mapped.  To this end, we firstly presumed 13 nucleotides upstream of the start codon as the transcription starting site (TSS) as previous study identified by random amplification of cDNA ends (RACE).  Secondly, the region from nucleotides –110 to +175 is the putative CP SGP, as predicted, a long stem loop structure by the secondary structure of RNA covering movement protein (MP) and CP.  To map the CGMMV CP SGP, we further constructed a series of deletion mutants according to RNA secondary structure prediction.  The deletion of TSS upstream significantly enhanced CP transcription when 105 nucleotides were retained before the CP TSS.  For the downstream of CP TSS, we analyzed the expression of enhanced green fluorescent protein (EGFP) in a series of vectors with partial deletion of the CGMMV CP and found that the nucleotides from +71 to +91 played a key role in the EGFP expression at the transcription level, while EGFP showed the highest expression level when 160 nucleotides were retained downstream of the CP TSS.  To confirm these results, we applied online software MEME to predict the motifs and cis-acting elements in the 466 nucleotides covering the sequences of deletion analysis.  Conserved motifs and relative acting elements were in regions in which transcription levels were the highest or enhanced.  To our best knowledge, this is the first mapping of CGMMV SGP.
 
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4. Effects of chilling tolerance induced by spermidine pretreatment on antioxidative activity, endogenous hormones and ultrastructure of indica-japonica hybrid rice seedlings
ZENG Yan-hua, ZAHNG Yu-ping, XIANG Jing, WU Hui, CHEN Hui-zhe, ZHANG Yi-kai, ZHU De-feng
Journal of Integrative Agriculture    2016, 15 (2): 295-308.   DOI: 10.1016/S2095-3119(15)61051-6
摘要2122)      PDF    收藏
Spermidine (Spd) is known to be involved in the regulation of plant responses to chilling stress and counteract the adverse effect of stress conditions. Antioxidant activities, endogenous hormones and ultrastructure change under chilling stress were investigated in indica-japonica hybrid rice seedlings. 12-d-old seedlings were subjected to exogenous Spd (1 mmol L–1) and then a chilling stress (6°C, 4 d) was induced, followed by a subsequent recovery (25°C, 4 d). Results showed that malondialdehyde (MDA) and proline content were enhanced significantly, whereas shoot fresh and dry weights decreased during chilling stress and after recovery; chlorophyll content of chilling-stressed seedlings increased slightly but declined after recovery; additionally, total soluble sugar, sucrose, fructose and starch contents increased significantly during chilling stress, and only soluble sugar and fructose contents were observed in increase after recovery; chilling stress-induced increases in superoxide dismutase (SOD), peroxidase (POD) and catalase (CAT) activities, but declined after recovery, and the level of ascorbate peroxidase was lower during chilling stress and after recovery; however, endogenous indole-3-acetic acid (IAA), zeatin riboside (ZR), gibberellic acid (GA3), and abscisic acid (ABA) levels were induced decreased compared with Spd pretreatment. The microscopic analysis revealed that chilling stress-induced destruction of the chloroplast envelope during chilling stress and increased the number of plastoglobuli along with aberrations in thylakoid membranes after recovery. In contrast, exogenous Spd protected rice seedlings from chilling-induced injuries in terms of lower malondialdehyde, proline and carbohydrates accumulation coupled with increased endogenous hormones metabolism. After recovery, Spd pretreatment chilling-exposed seedlings showed higher activities of antioxidant enzymes and normal physiological function of chloroplasts. These results suggest that Spd could promote effectively chilling tolerance which might be largely attributable to the integrity of cell structure and normal metabolism of endogenous hormones in indica-japonica hybrid rice seedlings.
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