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1.
Genome-wide detection of selective signatures in a Jinhua pig population
XU Zhong, SUN Hao, ZHANG Zhe, Zhao Qing-bo, Babatunde Shittu Olasege, Li Qiu-meng, Yue Yang, Ma Pei-pei, Zhang Xiang-zhe, Wang Qi-shan, Pan Yu-chun
Journal of Integrative Agriculture 2020, 19 (
5
): 1314-1322. DOI:
10.1016/S2095-3119(19)62833-9
摘要
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119
)
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The aim of this study was to detect evidence for signatures of recent selection in the Jinhua pig genome. These results can be useful to better understand the regions under selection in Jinhua pigs and might shed some lights on groups of genes that control production traits. In the present study, we performed extended haplotype homozygosity (EHH) tests to identify significant core regions in 202 Jinhua pigs. A total of 26 161 core regions spanning 636.42 Mb were identified, which occupied approximately 28% of the genome across all autosomes, and 1 158 significant (
P
<0.01) core haplotypes were selected. Genes in these regions were related to several economically important traits, including meat quality, reproduction, immune responses and exterior traits. A panel of genes including ssc-
mir-365-2
,
KDM8
,
RABEP2
,
GSG1L
,
RHEB
,
RPH3AL
and a signal pathway of PI3K-Akt were detected with the most extreme
P
-values. The findings in our study could draw a comparatively genome-wide map of selection signature in the pig genome, and also help to detect functional candidate genes under positive selection for further genetic and breeding research in Jinhua and other pigs.
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2.
CH4 Concentrations and Emissions from Three Rivers in the Chaohu Lake Watershed in Southeast China
YANG Li-biao, LI Xin-yan, YAN Wei-jin, MA Pei , WANG Jia-ning
Journal of Integrative Agriculture 2012, 12 (
4
): 665-673. DOI:
10.1016/S1671-2927(00)8587
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1889
)
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This study was conducted at three rivers of the Chaohu Lake watershed during the summer season of 2008, aiming to investigate the diurnal variations of dissolved CH4 concentrations and emissions, as well as the dynamics of CH4 accumulation emission rates over consecutive 72 h. The results showed that CH4 concentrations in the Fengle, Hangbu, and Nanfei rivers ranged from 56.33-124.79, 160.82-341.03, and 213.49-716.81 nmol L-1, respectively, over a daily cycle; while the saturation of CH4 ranged from 188.72-418.07, 538.74-1 142.46, and 715.23-2 401.38%, respectively, which indicated that surface waters were in all cases oversaturated with respect to the atmosphere. An obvious diurnal variation pattern of the dissolved CH4 concentrations demonstrated a higher value during daytime but a lower value for night time. Additionally, the highest dissolved CH4 concentrations were detected in the Nanfei River which received substantial urban wastewater discharges. CH4 emissions measured with floating chambers ranged from 5.82-15.46, 5.77-8.41, and 13.51-49.25 mg C m-2 h-1 for the Fengle, Hangbu, and Nanfei rivers, respectively, over a daily cycle. Significantly higher CH4 emissions were also observed from the Nanfei River. The accumulative CH4 emissions for each river increased with time, while a decline trend on the accumulation rates was investigated over the consecutive 72 h.
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