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1.
Unraveling waterlogging tolerance-related traits with QTL analysis in reciprocal intervarietal introgression lines using genotyping by sequencing in rapeseed (
Brassica napus
L.)
DING Xiao-yu, XU Jin-song, HUANG He, QIAO Xing, SHEN Ming-zhen, CHENG Yong, ZHANG Xue-kun
Journal of Integrative Agriculture 2020, 19 (
8
): 1974-1983. DOI:
10.1016/S2095-3119(19)62783-8
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116
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Soil waterlogging is a major environmental stress that suppresses the growth and productivity of rapeseed (
Brassica napus
L.). Natural genetic variations in waterlogging tolerance (WT) were observed but no QTL mapping has been done for WT related traits in rapeseed. In this study, QTL associated with three WT related traits including relative root length (RRL), relative hypocotyl length (RHL) and relative fresh weight (RFW) were dissected using a set of reciprocal introgression lines (ILs) derived from the cross GH01×ZS9, which showed significant difference in WT. Genotyping-by-sequencing (GBS) of the populations were performed, totally 1 468 and 1 450 binned SNPs were identified for GIL (GH01 as the recurrent parent) and ZIL (ZS9 as the recurrent parent) population, respectively. A total of 66 distinct QTLs for WT at the seedling establishment stage including 31 for RRL, 17 for RHL and 18 for RFW were detected. Among the 66 QTLs, 20 (29.4%) QTLs were detected in both genetic backgrounds and then they were integrated into six QTL clusters, which can be targeted in rapeseed breeding for improvement of WT through marker-assisted selection (MAS). Based on the physical positions of SNPs and the functional annotation of the
Arabidopsis thaliana
genome, 56 genes within the six QTL cluster regions were selected as preliminary candidate genes, then the resequencing and transcriptome information about parents were applied to narrow the extent of candidate genes. Twelve genes were determined as candidates for the six QTL clusters, some of them involved in RNA/protein degradation, most of them involved in oxidation-reduction process. These findings provided genetic resources, candidate genes to address the urgent demand of improving WT in rapeseed breeding.
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2.
Using proximal sensor data for soil salinity management and mapping
GUO Yan, ZHOU Yin, ZHOU Lian-qing, LIU Ting, WANG Lai-gang, CHENG Yong-zheng, HE Jia, ZHENG Guo-qing
Journal of Integrative Agriculture 2019, 18 (
2
): 340-349. DOI:
10.1016/S1671-2927(00)12104
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260
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Over the past five decades, increased pressure caused by the rapidly growing population has resulted in a reclamation of agricultural and urban buffer zones along China’s coastline. However, information about the spatio–temporal variation of soil salinity in these reclaimed regions is limited. As such, obtaining this information is crucial for mapping the variation in saline areas and to identify suitable salinity management strategies. In this study, we employed EM38 data to conduct digital soil mapping of spatio–temporal variation and map these variations of different site-specific zones. The results indicated that the distribution of soil salinity was heterogeneous in the middle of, and that the leaching of salts was significant at the edges of, the study field. Afterwards, fuzzy-k means algorithm was used to divide the site-specific management zones within the time series apparent soil electrical conductivity (ECa) data and the spatial correlations of variation. We concluded that two management zones are optimal to guide precision management. Zone A had an average salinity level of about 165 mS m
–1
, in which salt-tolerant crops, such as cotton and barley can grow normally, while crops such as soybean and cowpeas may be planted using leaching and increasing the mulching film methods to reduce the accumulation of salt in surface soil. In Zone B, there was a low salinity level with a mean of 89 mS m
–1
for ECa, which allows for rice, wheat, and a wide range of vegetables to be grown normally. In such situations, measures such as an optimized combination of irrigation and drainage, as well as soil amendment can be taken to adjust and control the salt content. Particularly, flattening the land with a large-scale machine was used to improve the ability of micro-topography to influence salt migration; rice and other dry, land crops were planted in rotation in combination with utilizing salt-leaching multiple times to speed up desalinization.
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3.
Physiological and molecular responses to cold stress in rapeseed (
Brassica napus
L.)
YAN Lei, Tariq Shah, CHENG Yong, Lü Yan, ZHANG Xue-kun, ZOU Xi-ling
Journal of Integrative Agriculture 2019, 18 (
12
): 2742-2752. DOI:
10.1016/S2095-3119(18)62147-1
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149
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Low temperature is one of the most important abiotic factors inhibiting growth, productivity, and distribution of rapeseed (
Brassica napus
L.). Therefore, it is important to identify and cultivate cold-tolerant germplasm. The objective of this study was to figure out the mechanism of chilling (4 and 2°C) and freezing (–2 and –4°C) stresses along with a control (22°C) in B. napus cultivars (1801 and C20) under controlled environment (growth chamber). The experiment was arranged in a complete randomized design with three replications. Our results exhibited that under chilling and freezing stresses, the increment of proline accumulation, soluble sugar and protein contents, and antioxidant enzyme activity were enhanced more in 1801 cultivar compared with C20 cultivar. At –2 and –4°C, the seedlings of C20 cultivar died completely compared with 1801 cultivar. Hydrogen peroxide (H
2
O
2
) and malondialdehyde contents (MDA) increased in both cultivars, but when the temperature was decreased up to –2 and –4°C, the MDA and H
2
O
2
contents continuously dropped in 1801 cultivar. Moreover, we found that leaf abscisic acid (ABA) was enhanced in 1801 cultivar under chilling and freezing stresses. Additionally, the transcriptional regulations of cold-tolerant genes (
COLD1
,
CBF4
,
COR6
.6,
COR15
, and
COR25
) were also determined using real-time quantitative PCR (RT-qPCR). RT-qPCR showed that higher expression of these genes were found in 1801 as compared to C20 under cold stress (chilling and freezing stresses). Therefore, it is concluded from this experiment that 1801 cultivar has a higher ability to respond to cold stress (chilling and freezing stresses) by maintaining hormonal, antioxidative, and osmotic activity along with gene transcription process than C20. The result of this study will provide a solid foundation for understanding physiological and molecular mechanisms of cold stress signaling in rapeseed (
B. napus
).
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4.
Exogenous application of a low concentration of melatonin enhances salt tolerance in rapeseed (
Brassica napus
L.) seedlings
ZENG Liu, CAI Jun-song, LI Jing-jing, LU Guang-yuan, LI Chun-sheng, FU Gui-ping, ZHANG Xue-kun, MA Hai-qing, LIU Qing-yun, ZOU Xi-ling, CHENG Yong
Journal of Integrative Agriculture 2018, 17 (
2
): 328-335. DOI:
10.1016/S2095-3119(17)61757-X
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827
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Melatonin is a naturally occurring compound in plants. Here, we tested the effect of exogenous melatonin on rapeseed (
Brassica napus
L.) grown under salt stress. Application of 30 μmol L
–1
melatonin alleviated salt-induced growth inhibition, and the shoot fresh weight, the shoot dry weight, the root fresh weight, and the root dry weight of seedlings treated with exogenous melatonin increased by 128.2, 142.9, 122.2, and 124.2%, respectively, compared to those under salt stress. In addition, several physiological parameters were evaluated. The activities of antioxidant enzymes including peroxidase (POD), catalase (CAT) and ascorbate peroxidase (APX) were enhanced by 16.5, 19.3, and 14.2% compared to their activities in plants without exogenous melatonin application under salt stress, while the H
2
O
2
content was decreased by 11.2% by exogenous melatonin. Furthermore, melatonin treatment promoted solute accumulation by increasing the contents of proline (26.8%), soluble sugars (15.1%) and proteins (58.8%). The results also suggested that higher concentrations (>50 μmol L
–1
) of melatonin could attenuate or even prevent the beneficial effects on seedling development. In conclusion, application of a low concentration of exogenous melatonin to rapeseed plants under salt stress can improve the H
2
O
2
-scavenging capacity by enhancing the activities of antioxidant enzymes such as POD, CAT and APX, and can also alleviate osmotic stress by promoting the accumulation of osmoregulatory substances such as soluble proteins, proline, and water soluble glucan. Ultimately, exogenous melatonin facilitates root development and improves the biomass of rapeseed seedlings grown under salt stress, thereby effectively alleviating the damage of salt stress in rapeseed seedlings.
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5.
Comparison of transcriptomes undergoing waterlogging at the seedling stage between tolerant and sensitive varieties of Brassica napus L.
ZOU Xi-ling, ZENG Liu, LU Guang-yuan, CHENG Yong, XU Jin-song, ZHANG Xue-kun
Journal of Integrative Agriculture 2015, 14 (
9
): 1723-1734. DOI:
10.1016/S2095-3119(15)61138-8
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2315
)
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RNA sequencing of the sensitive GH01 variety of Brassica napus L. seedling roots under 12 h of waterlogging was compared with previously published data of the ZS9 tolerant variety to unravel genetic mechanisms of waterlogging tolerance beyond natural variation. A total of 2 977 genes with similar expression patterns and 17 genes with opposite expression patterns were identified in the transcription profiles of ZS9 and GH01. An additional 1 438 genes in ZS9 and 1 861 genes in GH01 showed strain specific regulation. Analysis of the overlapped genes between ZS9 and GH01 revealed that waterlogging tolerance is determined by ability to regulate genes with similar expression patterns. Moreover, differences in both gene expression profiles and abscisic acid (ABA) contents between the two varieties suggest that ABA may play some role in waterlogging tolerance. This study identifies a subset of candidate genes for further functional analysis.
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6.
Cold Damage Risk Assessment of Double Cropping Rice in Hunan, China
CHENG Yong-xiang, HUANG Jing-feng, HAN Zhong-ling, GUO Jian-ping, ZHAO Yan-xia, WANG Xiu-zhen , GUO Rui-fang
Journal of Integrative Agriculture 2013, 12 (
2
): 352-363. DOI:
10.1016/S2095-3119(13)60235-X
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1572
)
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Combined with remote sensing data and meteorological data, cold damage risk was assessed for planting area of double cropping rice (DCR) in Hunan Province, China. A new methodology of cold damage risk assessment was built that apply to grid and have clear hazard-affected body. Each station cold damage annual frequency and average annual intensity of cold damage was calculated by using 1951-2010 station daily mean temperature and simple cold damage identification index. On this basis, average annual cold damage risk index was obtained by their product. The spatial analysis models of cold damage risk index about double-season early rice (DSER) and double-season later rice (DSLR) were established respectively by the relation of average annual cold damage risk index and its geographic factors. Critical threshold of level of average annual cold damage risk index for DSER and DSLR were respectively divided by the correlative equation of cold damage annual frequency and average annual intensity of cold damage. 2001-2010 planting area of DCR, acquired by time series analysis of MOD09A1 8-d composite land surface reflectance product, was as target of assessment. The results show average annual intensity of cold damage is exponential function of cold damage annual frequency, average annual cold damage risk index is directly proportional to cold damage cumulant and cold damage annual frequency, and is inversely proportional to happen times of cold damage and the square of statistical time sequence length. Cold damage risk of DSER is higher than DSLR in Hunan Province. In the 10-yr stacking map, DCR planting in low risk area accounted for 11.92% of total extraction area, in moderate risk area accounted for 69.62%, in high risk area accounted for 18.46%. According to the cold damage risk assessment result, DCR production can be guided to reduce cold damage losses.
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7.
Relationship Among Yield Components and Selection Criteria for Yield Improvement in Early Rapeseed (Brassica napus L.)
LU Guang-yuan, ZHANG Fang, ZHENG Pu-ying, CHENG Yong, LIU Feng-lan, FU Gui-ping, ZHANG, Xue-kun
Journal of Integrative Agriculture 2011, 10 (
7
): 997-1003. DOI:
10.1016/S1671-2927(11)60086-2
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1873
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The objective of this study was to determine the relationship between seed yield and other important agronomic traits ofearly-maturing rapeseed as a rotation crop in a double-cropping rice area using Pearson’s correlation coefficient as well asto estimate direct and indirect effects of specific yield component traits on seed yield via path analysis. Nineteen rapeseedgenotypes were grown at ten environments in South China during 2008-2009 and 12 characters were evaluated. Analysisof variance showed that environment had a significant impact on all characters. For most characters the genotype byenvironment interaction was weak and not statistically significant. Simple correlation analysis indicated that the numberof primary branches (PB), number of pods on the main raceme (PR), and number of seeds per pod made significantcontributions to seed yield per plant (SYP), while 1 000-seed weight was negatively correlated with SYP (
r
=-0.485,
P
<0.05).Furthermore, number of pods per plant (PP), PB, and PR had the greatest direct effects on SYP. In addition, PP and PB werethe best indicators to predict seed yield in stepwise regression analysis. Finally, yield component differences betweenearly- and medium-maturity varieties were compared; this showed that to improve the seed yield of early varieties, moreemphasis should be given to increase PP, PB, and PR, and reduce plant height and shortening of growth duration inbreeding practice.
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