Adapting to the enemy: Rice yellow mottle virus (RYMV) evolutionary dynamics and durable resistance in African rice

doi:10.1016/j.jia.2026.07.025

Journal of Integrative Agriculture ›› 2026, Vol. 25 ›› Issue (10): 3927-3940.DOI: 10.1016/j.jia.2026.07.025

收稿日期:2026-03-27 修回日期:2026-07-28 接受日期:2026-07-03 出版日期:2026-10-20 发布日期:2026-09-21

Adapting to the enemy: Rice yellow mottle virus (RYMV) evolutionary dynamics and durable resistance in African rice

Isaac Tawiah^{1, 2#}, Richard Akromah¹, Alexander Wereko Kena¹, Charles Kodia Kwoseh¹, Shailesh Yadav², Kossi Lorimpo Adjah², Geoffrey Onaga², Benjamin Annor¹, Zenna Negussie², Tella Hamidatou Euridice², Scholastica Quaicoe², Nana Kofi Abaka Amoah²

¹Department of Crop and Soil Sciences, Faculty of Agriculture, Kwame Nkrumah University of Science and Technology, Kumasi AK-385-1973, Ghana
²AfricaRice, Genetic Diversity and Improvement, Bouaké 01 BP 2551, Cote d’Ivoire

Received:2026-03-27 Revised:2026-07-28 Accepted:2026-07-03 Online:2026-10-20 Published:2026-09-21
About author:#Correspondence Isaac Tawiah, E-mail: I.Tawiah@cgiar.org
Supported by:
This work was supported by the Consultative Group of International Agriculture Research, Cote d’Ivoire (CGIAR) and the Science Programme-Breeding for Tomorrow, Cote d’Ivoire (SP01/B4T/AoW02).

摘要/Abstract

Abstract:

Rice yellow mottle virus (RYMV) is one of the most destructive viral diseases affecting rice production in sub-Saharan Africa (SSA), where increasing demand and persistent yield gaps continue to compromise food security. RYMV shows significant genetic and phylogeographic diversity across SSA, driven by mutation, recombination, selection, and restricted regional spread, enabling adaptation to host resistance. The main resistance genes, RYMV1, RYMV2, and RYMV3, primarily derived from Oryza glaberrima, differ in their molecular mechanisms and the selective pressures they impose on viral populations. Resistance breakdown linked to RYMV1 primarily stems from mutations in the viral VPg protein, whereas resistance mediated by RYMV2 and RYMV3 is overcome through changes in the P2a polyprotein and coat protein (CP), respectively. An evolution-informed framework combining viral phylogeography, resistance-breaking pathways, and breeding deployment strategies is proposed to explain regional variation in resistance durability and enhance long-term resistance management. Currently, using marker-assisted pyramiding of complementary resistance genes is the most promising and scalable strategy for achieving durable resistance, while genomic selection provides opportunities to improve both quantitative and background resistance. Sustainable management of RYMV will require region-specific deployment of resistant varieties, continuous surveillance of viral populations, integration of quantitative resistance, and better seed system management to reduce selection pressure and virus spread. Emerging technologies such as genome editing and artificial intelligence-assisted breeding may further expand the resistance toolbox but require careful integration.

Key words: rice , RYMV , resistance durability , resistance gene pyramiding , evolution-informed breeding

Isaac Tawiah, Richard Akromah, Alexander Wereko Kena, Charles Kodia Kwoseh, Shailesh Yadav, Kossi Lorimpo Adjah, Geoffrey Onaga, Benjamin Annor, Zenna Negussie, Tella Hamidatou Euridice, Scholastica Quaicoe, Nana Kofi Abaka Amoah. [J]. Journal of Integrative Agriculture, 2026, 25(10): 3927-3940.

Adapting to the enemy: Rice yellow mottle virus (RYMV) evolutionary dynamics and durable resistance in African rice [J]. Journal of Integrative Agriculture, 2026, 25(10): 3927-3940.

参考文献

Abo M E, Alegbejo M D, Sy A A, Misari S M. 2000. An overview of the mode of transmission, host plants and methods of detection of rice yellow mottle virus. Journal of Sustainable Agriculture, 17, 19–36.

Abo M E, Sy A A, Alegbejo M D. 1997. Rice yellow mottle virus (RYMV) in Africa: Evolution, distribution, economic significance for sustainable rice production, and management strategies. Journal of Sustainable Agriculture, 11, 85–111.

Abrokwah L A, Torkpo S K, Pereira G S, Oppong A, Eleblu J, Pita J, Offei S K. 2024. Rice yellow mottle virus (RYMV): A review. Viruses, 16, 1707.

Abubakar Z, Ali F, Pinel A, Traoré O, N’Guessan P, Notteghem J L, Kimmins F, Konaté G, Fargette D. 2003. Phylogeography of rice yellow mottle virus in Africa. Journal of General Virology, 84, 733–743.

Adjah K L, Asante M D, Toure A, Aziadekey M, Amoako-Andoh F O, Frei M, Diallo Y, Agboka K. 2022. Improvement of rice production under drought conditions in West Africa: Application of QTLs in breeding for drought resistance. Rice Science, 29, 512–521.

Agnoun Y, Yelome I, Sie M, Albar L, Ghesquière A, Silué D. 2019. Resistance of selected Oryza glaberrima landraces and their intra-specific breeding lines to Beninese rice yellow mottle virus isolates. Crop Protection, 119, 172–176.

Ahmadi N, Albar L, Pressoir G, Pinel A, Fargette D, Ghesquière A. 2001. Genetic basis and mapping of the resistance to rice yellow mottle virus. III. Analysis of QTL efficiency in introgressed progenies confirmed the hypothesis of complementary epistasis between two resistance QTLs. Theoretical and Applied Genetics, 103, 1084–1092.

Akwero A, Otim M H, Ochwo-Ssemakula M, Odong T L, Lamo J. 2022. Host plant reaction to Rice yellow mottle virus and allelic diversity of RYMV1 gene in rice cultivars in Uganda. Journal of Agricultural Science, 14, 125–140.

Albar L, Bangratz-Reyser M, Hébrard E, Ndjiondjop M N, Jones M, Ghesquière A. 2006. Mutations in the eIF(iso)4G translation initiation factor confer high resistance of rice to Rice yellow mottle virus. Plant Journal, 47, 417–426.

Albar L, Lorieux M, Ahmadi N, Rimbault I, Pinel A, Sy A A, Fargette D, Ghesquière A, Pressoir G, Albar L, Ahmadi N, Rimbault I, Lorieux M. 1998. Genetic basis and mapping of the resistance to rice yellow mottle virus. I. QTLs identification and relationship between resistance and plant morphology. Theoretical and Applied Genetics, 97, 1145–1154.

Anato V K S, Agnoun Y, Houndjo J, Oludare A, Agbangla C, Akoroda M, Adetimirin V O. 2021. Resistance of Oryza sativa and Oryza glaberrima genotypes to RBe24 isolate of Rice yellow mottle virus in Benin and effects of silicon on host response. Plant Pathology Journal, 37, 375–388.

Arouna A, Fatognon I A, Saito K, Futakuchi K. 2021. Moving toward rice self-sufficiency in sub-Saharan Africa by 2030: Lessons learned from 10 years of the Coalition for African Rice Development. World Development Perspectives, 21, 100291.

Arra Y, Auguy F, Stiebner M, Chéron S, Wudick M M, Miras M, Schepler-Luu V, Köhler S, Cunnac S, Frommer W B, Albar L. 2023. Rice Yellow Mottle Virus resistance by genome editing of the Oryza sativa L. ssp. japonica nucleoporin gene OsCPR5.1 but not OsCPR5.2. Plant Biotechnology Journal, 22, 1299–1311.

Balafas V, Karantoumanis E, Louta M, Ploskas N. 2023. Machine learning and deep learning for plant disease classification and detection. IEEE Access, 11, 114352–114377.

Banwo O O, Alegbejo M D, Abo M E. 2004. Rice yellow mottle virus genus Sobemovirus: A continental problem in Africa. Plant Protection Science, 40, 26–36.

Boisnard A, Albar L, Thiéméle D, Rondeau M, Ghesquière A. 2007. Evaluation of genes from eIF4E and eIF4G multigenic families as potential candidates for partial resistance QTLs to Rice yellow mottle virus in rice. Theoretical and Applied Genetics, 116, 53–62.

Bonnamy M, Pinel-Galzi A, Gorgues L, Chalvon V, Hébrard E, Chéron S, Nguyen T H, Poulicard N, Sabot F, Pidon H, Champion A, Césari S, Kroj T, Albar L. 2022. Rapid evolution of an RNA virus to escape recognition by a rice nucleotide-binding and leucine-rich repeat domain immune receptor. New Phytologist, 237, 900–913.

Bouet A, Amancho A, Kouassi N, Anguete K. 2013. Performance of new irrigated near-isogenic rice lines carrying rymv1 resistance gene against RYMV in West Africa: The case of Cote d’Ivoire. International Journal of Biological and Chemical Sciences, 7, 1221–1233.

Burdon J J, Barrett L G, Rebetzke G, Thrall P H. 2014. Guiding deployment of resistance in cereals using evolutionary principles. Evolutionary Applications, 7, 609–624.

CABI (Commonwealth Agricultural Bureaux International). 2022. Rice Yellow Mottle Virus. In: Commonwealth Agricultural Bureaux International Compendium. Commonwealth Agricultural Bureaux International, Wallingford, UK.

Covarrubias-Pazaran G, Martini J W R, Quinn M, Atlin G. 2021. Strengthening public breeding pipelines by emphasizing quantitative genetics principles and open-source data management. Frontiers in Plant Science, 12, 681624.

Crossa J, Beyene Y, Semagn K, Pérez P, Hickey J M, Chen C, de los Campos G, Burgueño J, Windhausen V S, Buckler E, Jannink J L, Cruz M A L, Babu R. 2013. Genomic prediction in maize breeding populations with genotyping-by-sequencing. G3 - Genes, Genomes, Genetics, 3, 1903–1926.

Delmotte F, Bourguet D, Franck P, Guillemaud T, Reboud X, Vacher C, Walker A S. 2016. Combining selective pressures to enhance the durability of disease resistance genes. Frontiers in Plant Science, 7, 225758.

Dharmaraj D, Selvaraj R, Kari B, Govindan S, Muthurajan R, Paramasiwam J. 2024. Marker-assisted pseudo-backcrossing for developing climate-resilient rice. Scientific Reports, 14, 30219.

Dossou L, Pinel-Galzi A, Aribi J, Poulicard N, Albar L, Fatogoma S, Ndjiondjop M N, Koné D, Hébrard E. 2023. Molecular tools to infer resistance-breaking abilities of rice yellow mottle virus isolates. Viruses, 15, 959.

Fahad S, Adnan M, Noor M, Arif M, Alam M, Khan I A, Ullah H, Wahid F, Mian I A, Jamal Y, Basir A, Hassan S, Saud S, Amanullah, Riaz M, Wu C, Khan M A, Wang D. 2019. Major constraints for global rice production. In: Hasanuzzaman M, Fujita M, Nahar K, Biswas J K, eds., Advances in Rice Research for Abiotic Stress Tolerance. Woodhead Publishing, Cambridge, UK. pp. 1–22.

Fabre F, Bruchou C, Palloix A, Moury B. 2009. Key determinants of resistance durability to plant viruses: Insights from a model linking within and between host dynamics. Virus Research, 141, 140–149.

Fabre F, Rousseau E, Mailleret L, Moury B. 2012. Durable strategies to deploy plant resistance in agricultural landscapes. New Phytologist, 193, 1064–1075.

Fargette D, Pinel A, Abubakar Z, Traoré O, Brugidou C, Fatogoma S, Hébrard E, Choisy M, Séré Y, Fauquet C, Konaté G. 2004. Inferring the evolutionary history of Rice yellow mottle virus from genomic, phylogenetic, and phylogeographic studies. Journal of Virology, 78, 3252–3261.

FMARD (Federal Ministry of Agriculture and Rural Development). 2021. National Rice Development Strategy II (NRDS II). 2nd ed. Federal Ministry of Agriculture and Rural Development, Abuja Nigeria.

Fomba S N. 1988. Screening for seedling resistance to Rice yellow mottle virus in some rice cultivars in Sierra Leone. Plant Disease 72, 641–642.

Garavito A, Guyot R, Lozano J, Gavory F, Samain S, Panaud O, Tohme J, Ghesquière A, Lorieux M. 2010. A genetic model for the female sterility barrier between Asian and African cultivated rice species. Genetics, 185, 1425–1440.

Ghesquière A, Albar L, Lorieux M, Ahmadi N, Fargette D, Huang N, Mccouch S R, Notteghem J L. 1997. A major quantitative trait locus for Rice Yellow Mottle Virus resistance maps to a cluster of blast resistance genes on chromosome 12. Phytopathology, 87, 1243–1249.

Hasan M M, Rafii M Y, Ismail M R, Mahmood M, Rahim H A, Alam M A, Ashkani S, Malek M A, Latif M A. 2015. Marker-assisted backcrossing: A useful method for rice improvement. Biotechnology and Biotechnological Equipment, 29, 237–254.

Hébrard E, Fargette D, Konaté G. 2008. Rice yellow mottle virus. In: Granoff A, Webster R G, eds., Encyclopedia of Virology. Elsevier, Amsterdam. pp. 485–490.

Hébrard E, Pinel-Galzi A, Oludare A, Poulicard N, Aribi J, Fabre S, Issaka S, Mariac C, Dereeper A, Albar L, Silué, D, Fargette D. 2018. Identification of a hypervirulent pathotype of rice yellow mottle virus: A threat to genetic resistance deployment in West-Central Africa. Phytopathology, 108, 299–307.

Hebrard E, Poulicard N, Rakotomalala M. 2021. Rice yellow mottle virus (Solemoviridae). In: Bamford D H, Zuckerman M, eds., Encyclopedia of Virology. 4th ed. Academic Press, Amsterdam. pp. 675–680.

Hébrard E, Poulicard N, Gérard C, Traoré O, Wu H C, Albar L, Fargette D, Bessin Y, Vignols F. 2010. Direct interaction between the Rice yellow mottle virus (RYMV) VPg and the central domain of the rice eIF(iso)4G1 factor correlates with rice susceptibility and RYMV virulence. Molecular Plant-Microbe Interactions, 23, 1506–1513.

Heuer S, Miézan K M. 2003. Assessing hybrid sterility in Oryza glaberrima × O. sativa hybrid progenies by PCR marker analysis and crossing with wide compatibility varieties. Theoretical and Applied Genetics, 107, 902–909.

Hospital F, Charcosset A. 1997. Marker-assisted introgression of quantitative trait loci. Genetics, 147, 1469–1485.

Huang L, Li Y, Chen S, Periyannan S, Fahima T. 2023. Editorial: Advances in crop resistance breeding using modern genomic tools. Frontiers in Plant Science, 14, 1143689.

Hubert J, Lyimo H J F, Luzi-kihupi A 2017. Geographical variation, distribution and diversity of Rice Yellow mottle virus phylotypes in Tanzania. American Journal of Plant Sciences, 6, 1264–1284.

Hubert J G, Pinel-Galzi A, Dibwe D, Cinyabuguma E, Kaboré A, Fargette D, Silué D, Hébrard E, Séré Y. 2013. First report of Rice yellow mottle virus on rice in the Democratic Republic of Congo. Plant Disease, 97, 1664.

Issaka S, Traoré O, Longué R D S, Pinel-Galzi A, Gill M S, Dellicour S, Bastide P, Guindon S, Hébrard E, Dugué M J, Séré Y, Semballa S, Aké S, Lemey P, Fargette D. 2021. Rivers and landscape ecology of a plant virus, Rice yellow mottle virus along the Niger Valley. Virus Evolution, 7, 1–14.

January B, Rwegasira G M. 2017. Temporal abundance and distribution of Rice yellow mottle virus vectors in farmers’ fields in Morogoro, Tanzania. Journal of Crop Protection, 6, 423–428.

Jaw A, Ndjionndjop M N, Akromah R, Séré Y. 2012. Identification of near-isogenic lines resistance to Rice yellow mottle virus. African Crop Science Journal, 20, 163–168.

Kanyeka Z L, Sangu E, Fargette D, Pinel-Galzi A, Hérbrard E. 2007. Distribution and diversity of local strains of Rice yellow mottle virus in Tanzania. African Crop Science Journal, 15, 201–209.

Kigaru A, Nganga E M, Murori R, Pappu H R, Runo S, Ateka E M. 2025. Pathogen dynamism and variability of Rice yellow mottle virus in Kenya. Phytopathology Research, 7, 43.

Koonin E V, Makarova K S 2019. Origins and evolution of CRISPR-Cas systems. Philosophical Transactions of the Royal Society of London Series B (Biological Sciences), 374, 20180087.

Kouassi N K, N’Guessan P, Albar L, Fauquet C M M, Brugidou C. 2005. Distribution and characterization of Rice yellow mottle virus: A threat to African farmers. Plant Disease, 89, 124–133.

Li Q, Huang L. 2024. RNA biopesticides: A cutting-edge approach to combatting aquaculture diseases and ensuring food security. Modern Agriculture, 2, e70006.

Longue R D S, Traore V S E, Zinga I, Asante M D, Bouda Z, Neya J B, Barro N, Traore O. 2018. Pathogenicity of rice yellow mottle virus and screening of rice accessions from the Central African Republic. Virology Journal, 15, 1–10.

Mehta D, Stürchler A, Hirsch-Hoffmann M, Gruissem W, Vanderschuren H. 2018. Linking CRISPR-Cas9 interference in cassava to the evolution of editing-resistant geminiviruses. Genome Biology, 20, 80.

Merrick L F, Burke A B, Chen X, Carter A H. 2021. Breeding with major and minor genes: Genomic selection for quantitative disease resistance. Frontiers in Plant Science, 12, 713667.

Merrick L F, Herr A W, Sandhu K S, Lozada D N, Carter A H. 2022. Optimizing plant breeding programs for genomic selection. Agronomy, 12, 714.

MoFA (Ministry of Food and Agriculture, Republic of Ghana). 2019. National Rice Development Strategy II (NRDS II: 2019–2030). Ministry of Food and Agriculture, Accra.

Moon S B, Kim D Y, Ko J H, Kim Y S. 2019. Recent advances in the CRISPR genome editing tool set. Experimental and Molecular Medicine, 51, 1–11.

Mrode R, Ojango J M K, Okeyo A M, Mwacharo J M. 2019. Genomic selection and use of molecular tools in breeding programs for indigenous and crossbred cattle in developing countries: Current status and future prospects. Frontiers in Genetics, 9, 694.

Ndjiondjop M N, Albar L, Fargette D, Fauquet C, Ghesquière A. 1999. The genetic basis of high resistance to Rice Yellow Mottle Virus (RYMV) in cultivars of two cultivated rice species. Plant Disease, 83, 931–935.

Ndjiondjop M N, Albar L, Sow M, Yao N, Djedatin G, Thiemélé D, Ghesquière A. 2013. Integration of molecular markers in rice improvement: A case study on resistance to Rice yellow mottle virus. In: Wopereis M C S, Johnson D E, Ahmadi N, Tollens E, Jalloh A, eds., Realizing Africa’s Rice Promise. Commonwealth Agricultural Bureaux International, Wallingford. pp. 161–172.

Oakey H, Cullis B, Thompson R, Comadran J, Halpin C, Waugh R. 2016. Genomic selection in multi-environment crop trials. G3 - Genes, Genomes Geneics, 6, 1313–1326.

Ochola D, Issaka S, Rakotomalala M, Pinel-Galzi A, Ndikumana I, Hubert J, Hébrard E, Séré Y, Tusiime G, Fargette D. 2015. Emergence of Rice yellow mottle virus in eastern Uganda: Recent and singular interplay between strains in East Africa and in Madagascar. Virus Research, 195, 64–72.

Odongo P J, Kojima N, Tsuboi T, Asea G, Natsuaki K T 2019. Evaluation of ugandan rice cultivars for resistance against Rice yellow mottle virus. Tropical Agriculture and Development, 63, 47–54.

Odongo P J, Onaga G, Ricardo O, Alicai T, Guy P L. 2021. Insights into natural genetic resistance to Rice yellow mottle virus and implications on breeding for durable resistance. Frontier in Plant Science, 12, 671355.

Ogbu A C, Ume O A, Nwogiji O C, Akeredolu S O, Eze O G, Onwe C V, Oduguwa, O I, Chigozie U V. 2024. Advances in the use of genome editing tools in Africa: A review. Asian Journal of Biochemistry, Genetics and Molecular Biology, 16, 48–67.

Oludare A, Tossou H T, Kini K, Silué D. 2016. Diversity of rice yellow mottle virus in Benin and Togo and screening for resistant accessions. Journal of Phytopathology, 164, 924–935.

Omiat E G, Asante M D, Traoré V S E, Oppong A, Ifie B E, Ofosu K A, Aribi J, Pinel-Galzi A, Comte A, Fargette D, Hébrard E, Traoré O, Offei S K, Danquah E Y, Poulicard N. 2023. Genetic diversity and epidemic histories of rice yellow mottle virus in Ghana. Virus Research, 329, 199106.

van Oort P A. J, Saito K, Tanaka A, Amovin-Assagba E, Van Bussel L G J, van Wart J, de Groot H, van Ittersum M K, Cassman K G, Wopereis M C S. 2015. Assessment of rice self-sufficiency in 2025 in eight African countries. Global Food Security, 5, 39–49.

Orjuela J, Deless E F, Kolade O, Chéron S, Ghesquière A, Albar L. 2013. A recessive resistance to Rice yellow mottle virus is associated with a rice homolog of the CPR5 gene, a regulator of active defense mechanisms. Molecular Plant-Microbe Interactions, 26, 1455–1463.

Otsuka K, Mano Y, Takahashi K. 2023. The rice green revolution in sub-Saharan Africa: Issues and opportunities. In: Otsuka K, Mano Y, Takahashi K, eds., Rice Green Revolution in Sub-Saharan Africa. Springer Nature, Singapore. pp. 3–24.

Pathania A, Rialch N, Sharma P N. 2017. Marker-assisted selection in disease resistance breeding: A boon to enhance agricultural production. In: Dubey S K, Pandey A, Sangwan R S, eds., Current Developments in Biotechnology and Bioengineering. Elsevier, Amsterdam. pp. 187–213.

Pidon H, Chéron S, Ghesquière A, Albar L. 2020. Allele mining unlocks the identification of RYMV resistance genes nd alleles in African cultivated rice. BMC Plant Biology, 20, 222.

Pidon H, Ghesquière A, Chéron, S, Issaka S, Hébrard E, Sabot F, Kolade O, Silué D, Albar L. 2017. Fine mapping of RYMV3: A new resistance gene to Rice yellow mottle virus from Oryza glaberrima. Theoretical and Applied Genetics, 130, 807–818.

Pilet-Nayel M L, Moury B, Caffier V, Montarry J, Kerlan M C, Fournet S, Durel C E, Delourme R. 2017. Quantitative resistance to plant pathogens in pyramiding strategies for durable crop protection. Frontiers in Plant Science, 8, 1838.

Pinel A, N’Guessan P, Bousalem M, Fargette D. 2000. Molecular variability of geographically distinct isolates of Rice yellow mottle virus in Africa. Archives of Virology, 145, 1621–1638.

Pinel-Galzi A, Dubreuil-Tranchant C, Hébrard E, Mariac C, Ghesquière A, Albar L. 2016. Mutations in Rice yellow mottle virus polyprotein p2a involved in RYMV2 gene resistance breakdown. Frontiers in Plant Science, 7, 1779.

Pinel-Galzi A, Mpunami A, Sangu E, Rakotomalala M, Traoré O, Sérémé D, Sorho F, Séré Y, Kanyeka Z, Konaté G, Fargette D. 2009. Recombination, selection and clock-like evolution of Rice yellow mottle virus. Virology, 394, 164–172.

Poulicard N, Pinel-Galzi A, Fargette D, Hébrard E. 2014. Alternative mutational pathways, outside the VPg, of Rice yellow mottle virus to overcome eIF(iso)4G-mediated rice resistance under strong genetic constraints. Journal of General Virology, 95, 219–224.

Poulicard N, Pinel-Galzi A, Hebrard E, Fargette D. 2010. Why Rice yellow mottle virus, a rapidly evolving RNA plant virus, is not efficient at breaking rymv1-2 resistance. Molecular Plant Pathology, 11, 145–154.

Poulicard N, Pinel-Galzi A, Hebrard E, Fargette D. 2009. Why Rice yellow mottle virus, a rapidly evolving RNA plant virus, is not efficient at breaking rymv1-2 resistance. Molecular Plant Pathology, 11, 145.

Poulicard N, Pinel-Galzi A, Traoré O, Vignols F, Ghesquière A, Konaté G, Hébrard E, Fargette D. 2012. Historical contingencies modulate the adaptability of Rice yellow mottle virus. PLoS Pathogens, 8, e1002482.

Rakotomalala M, Pinel-Galzi A, Albar L, Ghesquière A, Rabenantoandro Y, Ramavovololona P, Fargette D. 2008. Resistance to Rice yellow mottle virus in rice germplasm in Madagascar. European Journal of Plant Pathology, 122, 277–286.

Rakotomalala M, Pinel-Galzi A, Mpunami A, Randrianasolo A, Ramavovololona P, Rabenantoandro Y, Fargette D. 2013. Rice yellow mottle virus in Madagascar and in the Zanzibar Archipelago: Island systems and evolutionary time scale to study virus emergence. Virus Research, 171, 71–79.

Rimbaud L, Papaïx J, Barrett LG, Burdon J J, Thrall P H. 2018a. Mosaics, mixtures, rotations or pyramiding: What is the optimal strategy to deploy major gene resistance? Evolutionary Applications, 11, 1791–1810.

Rimbaud L, Papaïx J, Rey J F, Barrett L G, Thrall P H. 2018b. Assessing the durability and efficiency of landscape-based strategies to deploy plant resistance to pathogens. PLoS Computational Biology, 14, e1006067.

Rodenburg J, Saito K. 2022. Towards sustainable productivity enhancement of rice-based farming systems in sub-Saharan Africa. Field Crops Research, 287, 108670.

Sano Y, Chu Y, Oka H. 1979. Genetic studies of speciation in cultivated rice. 1. Genic analysis for the F1 sterility between O. sativa L. and O. glaberrima Steud. Japanese Journal of Genetics, 54, 121–132.

Sano Y. 1983. A new gene controlling sterility in F1 hybrids of two cultivated rice species. Journal of Heredity, 74, 435–439.

Savary S, Willocquet L, Pethybridge S J, Esker P, McRoberts N, Nelson A. 2019. The global burden of pathogens and pests on major food crops. Nature Ecology and Evolution, 3, 430–439.

Sekiya N, Nakajima T, Oizumi N, Kurosawa C, Tibanyendela N, Peter M A, Tomitaka M, Natsuaki K T. 2022. Agronomic practices preventing local outbreaks of rice yellow mottle virus disease revealed by spatial autoregressive analysis. Agronomy for Sustainable Development, 42, 15.

Sileshi G W, Gebeyehu S. 2021. Emerging infectious diseases threatening food security and economies in Africa. Global Food Security, 28, 100479.

Mabele A S, Mukoye B, Misiko Mukhongo D. 2020. Serological and molecular characterization detects unique rice yellow mottle virus strains in Kenya. American Journal of Plant Biology, 5, 120.

Spillane C, Gepts P. 2000. Evolutionary and genetic perspectives on the dynamics of crop genepools. In: Broadening the Genetic Base of Crop Production 25–70. International Plant Genetic Resources Institute (IPGRI), Food and Agriculture Organization of the United Nations (FAO), Commonwealth Agricultural Bureaux International. [2026-2-6]. https://www.researchgate.net/publication/353878049_Evolutionary_and_genetic_perspectives_on_the_dynamics_of_crop_genepools

Sun Y, He W, Xie Y, Zhao W, Tan J, Yang X, Dang T, Dong X, Xi K, Liu Y, Hu Y, Efisue A A, Jin D. 2020. Exploiting interspecific heterosis between African rice and Asian rice. Crop Science, 60, 2343–2353.

Suvi W T, Shimelis H, Laing M. 2019. Breeding rice for Rice yellow mottle virus resistance in Sub-Saharan Africa: A review. Acta Agriculturae Scandinavica (Section B - Soil and Plant Science), 69, 181–188.

Tawiah I, Asante M D, Oppong A, Asare K, Amadu B, Gyameyah D, Lamptey M, Kang K. 2021. Genetic control of resistance to Rice yellow mottle virus disease in two rice crosses. Journal of Crop Improvement, 36, 40–56.

Thiémélé D, Boisnard A, Ndjiondjop M N, Chéron S, Séré Y, Aké S, Ghesquière A, Albar L. 2010. Identification of a second major resistance gene to Rice yellow mottle virus, RYMV2, in the African cultivated rice species, O. glaberrima. Theoretical and Applied Genetics, 121, 169–179.

Thottappilly G, Rossel H W. 1993. Evaluation of resistance to Rice yellow mottle virus in Oryza species. Indian Journal of Virology, 9, 65–73.

Traoré O, Pinel A, Hébrard E, Dieudonné G M Y, Fargette D, Traoré A S, Konaté G. 2007. Occurrence of resistance-breaking isolates of Rice yellow mottle virus in West and Central Africa. American Phytopathological Society, 90, 259–263.

Traoré O, Pinel-Galzi A, Issaka S, Poulicard N, Aribi J, Aké S, Ghesquière A, Séré Y, Konaté G, Hébrard E, Fargette D. 2010. The adaptation of Rice yellow mottle virus to the eIF(iso)4G-mediated rice resistance. Virology, 408, 103–108.

Traoré O, Pinel-Galzi A, Sorho F, Sarra S, Rakotomalala M, Sangu E, Kanyeka Z, Séré Y, Konaté G, Fargette D. 2009. A reassessment of the epidemiology of Rice yellow mottle virus following recent advances in field and molecular studies. Virus Research, 141, 258–267.

Traore V S E, Asante M D, Gracen V E, Offei S K, Traore O. 2015. Screening of rice accessions for resistance to Rice yellow mottle virus. American Journal of Experimental Agriculture, 9, 1–12.

Tripathi L, Dhugga K S, Ntui V O, Runo S, Syombua E D, Muiruri S, Wen Z, Tripathi J N. 2022. Genome editing for sustainable agriculture in Africa. Frontiers in Genome Editing, 4, 876697.

Trivedi P, Leach J E, Tringe S G, Sa T, Singh B K. 2020. Plant–microbiome interactions: From community assembly to plant health. Nature Reviews Microbiology, 18, 607–621.

Trovao N S, Baele G, Vrancken B, Bielejec F, Suchard M A, Fargette D, Lemey P. 2015. Host ecology determines the dispersal patterns of a plant virus. Virus Evolution, 1, 1–14.

Tuberosa R. 2013. Marker-assisted breeding in crops. In: Christou P, Savin R, Costa-Pierce B A, Misztal I, Whitelaw C B A, eds., Sustainable Food Production. Springer, New York. pp. 123–145.

Upadhyaya S R, Danilevicz M F, Dolatabadian A, Neik T X, Zhang F, Al-Mamun H A, Bennamoun M, Batley J, Edwards D. 2024. Genomics-based plant disease resistance prediction using machine learning. Plant Pathology, 73, 2298–2309.

USDA (United States Department of Agriculture). 2023 Rice: World Markets and Trade. Foreign Agriculture Service, Washington, D.C.

De Vos K, Janssens C, Jacobs L, Campforts B, Boere E, Kozicka M, Havlík P, Hemerijckx L M, Van Rompaey A, Maertens M, Govers G. 2023. The case of urbanization and rice in Africa. In: EGU General Assembly 2023. April 24–28. Vienna, Austria. p. EGU23-1411.

Wang M, Yu Y, Haberer G, Marri P R, Fan C, Goicoechea J L, Zuccolo A, Song X, Kudrna D, Ammiraju J S S, Cossu R M, Maldonado C, Chen J, Lee S, Sisneros N, De Baynast K, Golser W, Wissotski M, Kim W, Sanchez P, et al. 2014. The genome sequence of African rice (Oryza glaberrima) and evidence for independent domestication. Nature Genetics, 46, 982–988.

Zhan J, Thrall P H, Burdon J J. 2014. Achieving sustainable plant disease management through evolutionary principles. Trends in Plant Science, 19, 570–575.

Zhao K, Tung C W, Eizenga G C, Wright M H, Ali M L, Price A H, Norton G J, Islam M R. Reynolds A, Mezey J, McClung A M, Bustamante C D, McCouch S R. 2011. Genome-wide association mapping reveals a rich genetic architecture of complex traits in Oryza sativa. Nature Communications, 2, 467.

Zulfiqar S, Farooq M A, Zhao T, Wang P P, Tabusam, J, Wang Y, Xuan S, Zhao J, Chen X, Shen S, Gu A. 2023. Virus-Induced Gene Silencing (VIGS): A powerful tool for crop improvement and its advancement towards epigenetics. International Journal of Molecular Sciences, 24, 5608.

Adapting to the enemy: Rice yellow mottle virus (RYMV) evolutionary dynamics and durable resistance in African rice

PDF

可视化

摘要/Abstract

引用本文

使用本文

参考文献

相关文章 0

编辑推荐

Metrics