Journal of Integrative Agriculture ›› 2024, Vol. 23 ›› Issue (3): 849-862.DOI: 10.1016/j.jia.2023.11.024
收稿日期:
2023-04-28
接受日期:
2023-07-23
出版日期:
2024-03-20
发布日期:
2024-03-02
A mutation in the promoter of the yellow stripe-like transporter gene in cucumber results in a yellow cotyledon phenotype
Jiawei
Pan1*, Jia Song1*, Rahat Sharif1, Xuewen Xu1,
Shutong Li2#, Xuehao Chen1#
1 School
of Horticulture and Landscape Architecture, Yangzhou University, Yangzhou
225009, China
2 Institute of Vegetables, Tianjin Academy of
Agricultural Sciences, Tianjin 300384, China
Received:
2023-04-28
Accepted:
2023-07-23
Online:
2024-03-20
Published:
2024-03-02
About author:
Jiawei Pan, E-mail: panjiawei199703@163.com; Jia Song, E-mail: 13952599470@163.com; #Correspondence Xuehao Chen, Tel: +86-514-87971894, E-mail: xhchen@yzu.edu.cn; Shutong Li, Tel: +86-22-23678666, E-mail: Lishutong2019@163.com
* These authors contributed equally to this study.
Supported by:
摘要:
在高等植物中,叶色突变体被视为研究叶绿素生物合成、光合作用机制和叶绿体发育的理想材料。在此,我们鉴定了一个在栽培黄瓜中表现出黄色子叶的自发突变体yc412。该黄致死突变体表现出现异常的叶绿体超微结构、较低的光合能力和色素含量。通过BSA测序和精细定位,我们将黄色子叶(yc)位点缩小到3号染色体上的一个~96.8 kb区间。通过重测序技术和分子克隆,我们确定Csyc为候选基因,该基因编码一个黄条纹转运蛋白。Csyc启动子区域的T到C突变导致yc412的黄色子叶表型。与YZU027A(野生型)相比,Csyc在yc412子叶中的表达显著下调。通过病毒诱导基因沉默技术在黄瓜中沉默Csyc,导致叶片的叶绿素含量显著降低,叶片褪绿。此外,转录组分析表明,在yc412子叶中,与叶绿体相关基因和叶绿素生物合成相关基因显著下调。本研究结果为黄条纹转运蛋白在植物叶绿体发育和叶绿素合成中的分子功能提供了新的认识。
. 黄瓜黄色条纹转运蛋白基因启动子突变导致黄色子叶表型的研究[J]. Journal of Integrative Agriculture, 2024, 23(3): 849-862.
Jiawei Pan, Jia Song, Rahat Sharif, Xuewen Xu, Shutong Li, Xuehao Chen.
A mutation in the promoter of the yellow stripe-like transporter gene in cucumber results in a yellow cotyledon phenotype [J]. Journal of Integrative Agriculture, 2024, 23(3): 849-862.
Chen H, Cheng Z J, Ma X D, Wu H, Liu Y L, Zhou K N, Chen Y L, Ma W W, Bi J C, Zhang X, Guo X P, Wang J L, Lei C L, Wu F Q, Lin Q B, Liu Y Q, Liu L L, Jiang L. 2013. A knockdown mutation of YELLOW-GREEN LEAF2 blocks chlorophyll biosynthesis in rice. Plant Cell Reports, 32, 1855–1867. Cheng M Z, Meng F Y, Mo F L, Chen X L, Zhang H, Wang A X. 2022. Insights into the molecular basis of a yellow leaf color mutant (ym) in tomato (Solanum lycopersicum). Scientia Horticulturae, 293, 110743. Chu H H, Chiecko J, Punshon T, Lanzirotti A, Lahner B, Salt D E, Walker E L. 2010. Successful reproduction requires the function of Arabidopsis YELLOW STRIPE-LIKE1 and YELLOW STRIPE-LIKE3 metal-nicotianamine transporters in both vegetative and reproductive structures. Plant Physiology, 154, 197–210. Curie C, Cassin G, Couch D, Divol F, Higuchi K, Jean M, Misson J, Schikora A, Czernic P, Mari S. 2009. Metal movement within the plant: contribution of nicotianamine and yellow stripe 1-like transporters. Annals of Botany, 103, 1–11. Curie C, Panaviene Z, Loulergue C, Dellaporta S L, Briat J F, Walker E L. 2001. Maize yellow stripe1 encodes a membrane protein directly involved in Fe(III) uptake. Nature, 409, 346–349. Demarsy E, Courtois F, Azevedo J, Buhot L, Lerbs-Mache S. 2006. Building up of the plastid transcriptional machinery during germination and early plant development. Plant Physiology, 142, 993–1003. Ding Y, Yang W, Su C G, Ma H H, Pan Y, Zhang X G, Li J H. 2019. Tandem 13-lipoxygenase genes in a cluster confers yellow-green leaf in cucumber. International Journal of Molecular Sciences, 20, 3102. Dong X, Duan S, Wang H B, Jin H L. 2020. Plastid ribosomal protein LPE2 is involved in photosynthesis and the response to C/N balance in Arabidopsis thaliana. Journal of Integrative Plant Biology, 62, 1418–1432. Esteban R, Fernandez-Marin B, Becerril J M, Garcia-Plazaola J I. 2008. Photoprotective implications of leaf variegation in E. dens-canis L. and P. officinalis L. Journal of Plant Physiology, 165, 1255–1263. Feng P, Shi J Q, Zhang T, Zhong Y Q, Zhang L S, Yu G L, Zhang T Q, Zhu X Y, Xing Y D, Yin W Z, Sang X C, Ling Y H, Zhang C W, Yang Z L, He G H, Wang N. 2019. Zebra leaf 15, a receptor-like protein kinase involved in moderate low temperature signaling pathway in rice. Rice, 12, 83. Fromme P, Melkozernov A, Jordan P, Krauss N. 2003. Structure and function of photosystem I: interaction with its soluble electron carriers and external antenna systems. FEBS Letters, 555, 40–44. Fu W, Ye X, Ren J, Li Q, Du J, Hou A, Mei F, Feng H, Liu Z. 2019. Fine mapping of lcm1, a gene conferring chlorophyll-deficient golden leaf in Chinese cabbage (Brassica rapa ssp. pekinensis). Molecular Breeding, 39, 52. Gao M, Sun Q R, Zhai L M, Zhao D R, Lv J H, Han Z H, Wu T, Zhang X Z, Xu X F, Wang Y. 2022. Genome-wide identification of apple PPI genes and a functional analysis of the response of MxPPI1 to Fe deficiency stress. Plant Physiology and Biochemistry, 189, 94–103. Gao M L, Hu L L, Li Y H, Weng Y Q. 2016. The chlorophyll-deficient golden leaf mutation in cucumber is due to a single nucleotide substitution in CsChlI for magnesium chelatase I subunit. Theoretical and Applied Genetics, 129, 1961–1973. Hill J T, Demarest B L, Bisgrove B W, Gorsi B, Su Y C, Yost H J. 2013. MMAPPR: Mutation mapping analysis pipeline for pooled RNA-seq. Genome Research, 23, 687–697. Hu L, Zhang H, Xie C, Wang J, Zhang J, Wang H, Weng Y, Chen P, Li Y. 2020. A mutation in CsHD encoding a histidine and aspartic acid domain-containing protein leads to yellow young leaf-1 (yyl-1) in cucumber (Cucumis sativus L.). Plant Science, 293, 110407. Huang S N, Liu Z Y, Li D Y, Yao R P, Hou L, Li X, Feng H. 2016. Physiological characterization and comparative transcriptome analysis of a slow-growing reduced-thylakoid mutant of Chinese cabbage (Brassica campestris ssp. pekinensis). Frontiers in Plant Science, 7, 3. Inoue H, Kobayashi T, Nozoye T, Takahashi M, Kakei Y, Suzuki K, Nakazono M, Nakanishi H, Mori S, Nishizawa N K. 2009. Rice OsYSL15 is an iron-regulated iron (III)-deoxymugineic acid transporter expressed in the toots and is essential for iron uptake in early growth of the seedlings. Journal of Biological Chemistry, 284, 3470–3479. Kobayashi T, Nishizawa N K. 2012. Iron uptake, translocation, and regulation in higher plants. Annual Review of Plant Biology, 63, 131–152. Lee S, Chiecko J C, Kim S A, Walker E L, Lee Y, Guerinot M L, An G. 2009. Disruption of OsYSL15 Leads to iron inefficiency in rice plants. Plant Physiology, 150, 786–800. Li H, Durbin R. 2009. Fast and accurate short read alignment with Burrows–Wheeler transform. Bioinformatics, 25, 1754–1760. Liu C H, Zhu H T, Xing Y, Tan J J, Chen X H, Zhang J J, Peng H F, Xie Q J, Zhang Z. 2016. Albino Leaf 2 is involved in the splicing of chloroplast group I and II introns in rice. Journal of Experimental Botany, 67, 5339–5347. Liu M, Liang Z, Aranda M A, Hong N, Liu L, Kang B, Gu Q. 2020. A cucumber green mottle mosaic virus vector for virus-induced gene silencing in cucurbit plants. Plant Methods, 16, 9. Liu T T, Tao B L, Wu H F, Wen J, Yi B, Ma C Z, Tu J X, Fu T D, Zhu L X, Shen J X. 2021. Bn.YCO affects chloroplast development in Brassica napus L. Crop Journal, 9, 992–1002. Livak K J, Schmittgen T D. 2001. Analysis of relative gene expression data using real-time quantitative PCR and the 2–ΔΔCT method. Methods, 25, 402–408. Long W H, Long S F, Jiang X, Xu H F, Peng Q, Li J L, Zhang X C, Zhang D S, Liu X W, Zhu S S. 2022. A rice yellow-green-leaf 219 mutant lacking the divinyl reductase affects chlorophyll biosynthesis and chloroplast development. Journal of Plant Growth Regulation, 41, 3233–3242. Love M I, Huber W, Anders S. 2014. Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2. Genome Biology, 15, 550. Lu X M, Hu X J, Zhao Y Z, Song W B, Zhang M, Chen Z L, Chen W, Dong Y B, Wang Z H, Lai J S. 2012. Map-based cloning of zb7 encoding an IPP and DMAPP synthase in the MEP pathway of maize. Molecular Plant, 5, 1100–1112. Mao G Z, Wei H L, Hu W, Ma Q, Zhang M, Wang H T, Yu S X. 2019. Fine mapping and molecular characterization of the virescent gene vsp in Upland cotton (Gossypium hirsutum). Theoretical and Applied Genetics, 132, 2069–2086. McKenna A, Hanna M, Banks E, Sivachenko A, Cibulskis K, Kernytsky A, Garimella K, Altshuler D, Gabriel S, Daly M, DePristo M A. 2010. The genome analysis toolkit: A map reduce framework for analyzing next-generation DNA sequencing data. Genome Research, 20, 1297–1303. Miao H, Zhang S P, Wang M, Wang Y, Weng Y Q, Gu X F. 2016. Fine mapping of virescent leaf gene v-1 in cucumber (Cucumis sativus L.). International Journal of Molecular Sciences, 17, 1602. Mikhaylichenko O, Bondarenko V, Harnett D, Schor I E, Males M, Viales R R, Furlong E E M. 2018. The degree of enhancer or promoter activity is reflected by the levels and directionality of eRNA transcription. Genes & Development, 32, 42–57. Murray M G, Thompson W F. 1980. Rapid isolation of high molecular weight plant DNA. Nucleic Acids Research, 8, 4321–4326. Nagata N, Tanaka R, Satoh S, Tanaka A. 2005. Identification of a vinyl reductase gene for chlorophyll synthesis in Arabidopsis thaliana and implications for the evolution of Prochlorococcus species. Plant Cell, 17, 233–240. Pang C K, Zhang W, Peng M L, Zhao X Z, Shi R, Wu X, Chen F, Sun C M, Wang X D, Zhang J F. 2022. Fine mapping and characterization of a major gene responsible for chlorophyll biosynthesis in Brassica napus L. Biomolecules, 12, 402. Park S Y, Yu J W, Park J S, Li J, Yoo S C, Lee N Y, Lee S K, Jeong S W, Seo H S, Koh H J, Jeon J S, Park Y I, Paek N C. 2007. The senescence-induced staygreen protein regulates chlorophyll degradation. Plant Cell, 19, 1649–1664. Rosas U, Mei Y, Xie Q G, Banta J A, Zhou R W, Seufferheld G, Gerard S, Chou L, Bhambhra N, Parks J D, Flowers J M, McClung C R, Hanzawa Y, Purugganan M D. 2014. Variation in Arabidopsis flowering time associated with cis-regulatory variation in CONSTANS. Nature Communications, 5, 3651. Saitou N, Nei M. 1987. The neighbor-joining method: A new method for reconstructing phylogenetic trees. Molecular Biology and Evolution, 4, 406–425. Sakowska K, Alberti G, Genesio L, Peressotti A, Delle Vedove G, Gianelle D, Colombo R, Rodeghiero M, Panigada C, Juszczak R, Celesti M, Rossini M, Haworth M, Campbell B W, Mevy J P, Vescovo L, Cendrero-Mateo M, Rascher U, Miglietta F. 2018. Leaf and canopy photosynthesis of a chlorophyll deficient soybean mutant. Plant Cell and Environment, 41, 1427–1437. Shi C M, Shen X Y, Zhang Z Y, Zhou Y H, Chen R, Luo J Y, Tang Y P, Lu Y G, Li F, Ouyang B. 2022. Conserved role of fructokinase-like protein 1 in chloroplast development revealed by a seedling-lethal albino mutant of pepper. Horticulture Research, 9, uhab084. Siren J, Valimaki N, Makinen V. 2014. Indexing graphs for path queries with applications in genome research. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 11, 375–388. Song M F, Wei Q Z, Wang J, Fu W Y, Qin X D, Lu X M, Cheng F, Yang K, Zhang L, Yu X Q, Li J, Chen J F, Lou Q F. 2018. Fine mapping of CsVYL, conferring virescent leaf through the regulation of chloroplast development in cucumber. Frontiers in Plant Science, 9, 432. Sugimoto H, Kusumi K, Noguchi K, Yano M, Yoshimura A, Iba K. 2007. The rice nuclear gene, VIRESCENT 2, is essential for chloroplast development and encodes a novel type of guanylate kinase targeted to plastids and mitochondria. The Plant Journal, 52, 512–527. Thompson J D, Higgins D G, Gibson T J. 1994. CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Research, 22, 4673–4680. Trapnell C, Williams B A, Pertea G, Mortazavi A, Kwan G, van Baren M J, Salzberg S L, Wold B J, Pachter L. 2010. Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation. Nature Biotechnology, 28, 511–515. Wang Y, Wang C, Zheng M, Lyu J, Xu Y, Li X, Niu M, Long W, Wang D, Wang H, Terzaghi W, Wang Y, Wan J. 2016. WHITE PANICLE1, a Val-tRNA synthetase regulating chloroplast ribosome biogenesis in rice, is essential for early chloroplast development. Plant Physiology, 170, 2110–2123. Wang Z X, Yang L Y, Wu D X, Zhang N, Hua J. 2021. Polymorphisms in cis-elements confer SAUR26 gene expression difference for thermo-response natural variation in Arabidopsis. New Phytologist, 229, 2751–2764. Waters B M, Chu H H, DiDonato R J, Roberts L A, Eisley R B, Lahner B, Salt D E, Walker E L. 2006. Mutations in Arabidopsis Yellow Stripe-Like1 and Yellow Stripe-Like3 reveal their roles in metal ion homeostasis and loading of metal ions in seeds. Plant Physiology, 141, 1446–1458. Whelan E D P, Williams P H, Abul-Hayja Z. 1975. The inheritance of two induced cotyledon mutants of cucumber. Hortscience, 10, 267–269. Wu X, Wang Y, Ni Q, Li H, Wu X, Yuan Z, Xiao R, Ren Z, Lu J, Yun J, Wang Z, Li X. 2023. GmYSL7 controls iron uptake, allocation, and cellular response of nodules in soybean. Journal of Integrative Plant Biology, 65, 167–187. Wu Z M, Zhang X, He B, Diao L P, Sheng S L, Wang J L, Guo X P, Su N, Wang L F, Jiang L, Wang C M, Zhai H Q, Wan J M. 2007. A chlorophyll-deficient rice mutant with impaired chlorophyllide esterification in chlorophyll biosynthesis. Plant Physiology, 145, 29–40. Xing A Q, Williams M E, Bourett T M, Hu W N, Hou Z L, Meeley R B, Jaqueth J, Dam T, Li B L. 2014. A pair of homoeolog ClpP5 genes underlies a virescent yellow-like mutant and its modifier in maize. The Plant Journal, 79, 192–205. Xiong L R, Du H, Zhang K Y, Lv D, He H L, Pan J S, Cai R, Wang G. 2021. A mutation in CsYL2.1 encoding a plastid isoform of triose phosphate isomerase leads to yellow leaf 2.1 (yl2.1) in cucumber (Cucumis sativus L.). International Journal of Molecular Sciences, 22, 322. Yagi Y, Ishizaki Y, Nakahira Y, Tozawa Y, Shiina T. 2012. Eukaryotic-type plastid nucleoid protein pTAC3 is essential for transcription by the bacterial-type plastid RNA polymerase. Proceedings of the National Academy of Sciences of the United States of America, 109, 7541–7546. Yagi Y, Shiina T. 2014. Recent advances in the study of chloroplast gene expression and its evolution. Frontiers in Plant Science, 5, 61. Yamatani H, Ito T, Nishimura K, Yamada T, Sakamoto W, Kusaba M. 2022. Genetic analysis of chlorophyll synthesis and degradation regulated by BALANCE of CHLOROPHYLL METABOLISM. Plant Physiology, 189, 419–432. Yin X, Yang Y Q, Lv Y Q, Li Y, Yang D N, Yue Y L, Yang Y P. 2020. BrrICE1.1 is associated with putrescine synthesis through regulation of the arginine decarboxylase gene in freezing tolerance of turnip (Brassica rapa var. rapa). BMC Plant Biology, 20, 504. Yoo S C, Cho S H, Sugimoto H, Li J J, Kusumi K, Koh H J, Iba K, Paek N C. 2009. Rice virescent3 and stripe1 encoding the large and small subunits of ribonucleotide reductase are required for chloroplast biogenesis during early leaf development. Plant Physiology, 150, 388–401. Yu Q B, Huang C, Yang Z N. 2014. Nuclear-encoded factors associated with the chloroplast transcription machinery of higher plants. Frontiers in Plant Science, 5, 316. Zha G, Yin J, Cheng F, Song M, Zhang M, Obel H O, Wang Y, Chen J, Lou Q. 2022. Fine mapping of CscpFtsY, a gene conferring the yellow leaf phenotype in cucumber (Cucumis sativus L.). BMC Plant Biology, 22, 570. Zhai L M, Sun Q R, Gao M, Cheng X X, Liao X J, Wu T, Zhang X Z, Xu X F, Wang Y, Han Z H. 2022. MxMPK4-1 phosphorylates NADPH oxidase to trigger the MxMPK6-2-MxbHLH104 pathway mediated Fe deficiency responses in apple. Plant Cell and Environment, 45, 2810–2826. Zhang K, Li Y, Zhu W, Wei Y, Njogu M K, Lou Q, Li J, Chen J. 2020. Fine mapping and transcriptome analysis of virescent leaf gene v-2 in cucumber (Cucumis sativus L.). Frontiers in Plant Science, 11, 570817. Zhang K, Liu Z Y, Shan X F, Li C Y, Tang X Y, Chi M Y, Feng H. 2017. Physiological properties and chlorophyll biosynthesis in a Pak-choi (Brassica rapa L. ssp chinensis) yellow leaf mutant, pylm. Acta Physiologiae Plantarum, 39, 22. Zhang T, Dong X, Yuan X, Hong Y, Zhang L, Zhang X, Chen S. 2022. Identification and characterization of CsSRP43, a major gene controlling leaf yellowing in cucumber. Horticulture Research, 9, uhac212. Zhang Y X, Sun T Z, Liu S Q, Dong L, Liu C Y, Song W W, Liu J J, Gai S P. 2016. MYC cis-elements in PsMPT promoter is involved in chilling tesponse of Paeonia suffruticosa. PLoS ONE, 11, e0155780. Zheng H, Wang Z R, Tian Y L, Liu L L, Lv F, Kong W Y, Bai W T, Wang P R, Wang C L, Yu X W, Liu X, Jiang L, Zhao Z G, Wan J M. 2019. Rice albino 1, encoding a glycyl-tRNA synthetase, is involved in chloroplast development and establishment of the plastidic ribosome system in rice. Plant Physiology and Biochemistry, 139, 495–503. Zhu X W, Pan Y, Liu Z, Liu Y C, Zhong D Y, Duan Z B, Tian Z X, Zhu B G, Zhou G. 2020. Mutation of YL results in a yellow leaf with chloroplast RNA editing defect in soybean. International Journal of Molecular Sciences, 21, 4275. |
No related articles found! |
阅读次数 | ||||||
全文 |
|
|||||
摘要 |
|
|||||