Andaya V C, Mackill D J. 2003. Mapping of QTLs associated with cold tolerance during the vegetative stage in rice. Journal of Experimental Botany, 54, 2579–2585.Andaya V C, Tai T H. 2006. Fine mapping of the qCTS12 locus, a major QTL for seedling cold tolerance in rice. Theoretical and Applied Genetics, 113, 467–475.Andaya V C, Tai T H. 2007. Fine mapping of the qCTS4 locus associated with seedling cold tolerance in rice (Oryza sativa L.). Molecular Breeding, 20, 349–358. Chen D Z, Zhong P A, Xiao Y Q, Huang Y J, Xie J K. 2002. Identification of QTLs for cold tolerance at seedling stage in dongxiang wild rice (Oryza rufipogon Griff.) by SSR markers. Acta Agriculturae Universitatis Jiangxiensis, 24, 753–756. (in Chinese)Chen J, Bughio H, Chen D Z, Liu G J, Zheng K L, Zhuang J Y. 2006. Development of chromosomal segment substitution lines from a backcross recombinant inbred population of interspecific rice cross. Rice Science, 13, 15–21. Chen X R, Yang K S, Fu J R, Zhu C L, Peng X S, He X P, He H H. 2008. Identification and genetic analysis of fertility restoration ability in Dongxiang wild rice (Oryza rufipogon). Rice Science, 15, 21–28. Churchill G A, Doerge R W. 1994. Empirical threshold value for quantitative trait mapping. Genetics, 138, 963–971.Farrell T C, Fox K M, Williams R L, Fukai S, Reinke R F, Lewin L G. 2001. Temperature constraint to rice production in Australia and Laos: a shared problem. In: Increased Lowland Rice Production in the Mekong Region, Proceedings of an International Workshop Held in Vientiane. ACIAR Proceedings 101, Laos. pp. 129–137. Fujino K. 2004. A major gene for low temperature germinability in rice (Oryza sativa L.). Euphytica, 136, 63–68.Han L Z, Qiao Y L, Cao G L, Zhang Y Y, An Y P, Ye J D, Koh H J. 2005. QTL analysis on cold tolerance during early growth period in rice. Chinese Journal of Rice Science, 19, 122–126. (in Chinese)Huang L S, Liu L F, Liu Z X. 2008. Advances and prospects of cold tolerance in rice. Hunan Agricultural Sciences, 1, 3–6. (in Chinese)Kim S M, Suh J P, Lee C K, Lee J H, Kim Y G, Jena K K. 2014. QTL mapping and development of candidate gene?derived DNA markers associated with seedling cold tolerance in rice (Oryza sativa L.). Molecular Genetics and Genomics, 289, 333–343. Kosambi D D. 1943. The estimation of map distance from recombination values. Annals of Eugenics, 12, 172–175.Koseki M, Kitazawa N, Yonebayashi S, Maehara Y, Wang Z, Minobe Y. 2010. Identification and fine mapping of a major quantitative trait locus originating from wild rice, controlling cold tolerance at the seedling stage. Molecular Genetics and Genomics, 284, 45–54. Lander E S, Green P, Abrahamson J, Barlow A, Daly M J, Lincoln S E, Newburg L. 1987. MAPMAKER: An interactive computer package for constructing primary genetic linkage maps of experimental and natural populations. Genomics, 1, 174–181.Lee T M, Lur H S, Chu C. 1995. Abscisic acid and putrescine accumulation in chilling-tolerant rice cultivars. Crop Science, 35, 502–508.Liu F X, Sun C Q, Tan L B, Fu Y C, Li D J, Wang X K. 2003. Identification of QTL for cold tolerance at booting and flowering stage in Jiangxi Dongxiang wild rice. Chinese Science Bulletin, 48, 1864–1867.Liu F X, Xu W Y, Song Q, Tan L B, Liu J Y, Zhu Z F, Fu Y C, Sun C Q. 2013. Microarrayassisted fine-mapping of quantitative trait loci for cold tolerance in rice. Molecular Plant, 6, 757–767. Lou Q J, Chen L, Sun Z X, Xing Y Z, Li J, Xu X Y, Mei H W, Luo L J. 2007. A major QTL associated with cold tolerance at seedling stage in rice (Oryza sativa L.). Euphytica, 158, 87–94.Luo X D, Dai L F, Cao J F, Jian S R, Chen Y L, Hu B L, Xie J K. 2012. Identification and molecular cytology analysis of cold tolerance introgression lines derived from Oryza sativa L. mating with O. rufipogon Griff. Euphytica, 187, 461–469.Lü Y, Guo Z L, Li X K, Ye H Y, Li X H, Xiong L Z. 2016. New insights into the genetic basis of natural chilling and cold shock tolerance in rice by genome-wide association analysis. Plant, Cell and Environment, 39, 556–570.Mao D, Yu L, Chen D, Li L, Zhu Y, Xiao Y, Zhang D, Chen C. 2015. Multiple cold resistance loci confer the high cold tolerance adaptation of Dongxiang wild rice (Oryza rufipogon) to its high-latitude habitat. Theoretical and Applied Genetics, 128, 1359–1371.McCouch S R, CGSNL (Committee on Gene Symbolization, Nomenclature and Linkage, Rice Genetics Cooperative). 2008. Gene nomenclature system for rice. Rice, 1, 72–84. Murashige T, Skoog F. 1962. A revised medium for rapid growth and bioassays with tobacco tissue cultures. Physiologia Plantarum, 15, 473–497.Murray H G, Thompson W F. 1980. Rapid isolation of high molecular weight plant DNA. Nucleic Acids Research, 8, 4321–4326.Orvar B L, Sangwan V, Omann F, Dhindsa R S. 2000. Early steps in cold sensing by plant cells: The role of actin cytoskeleton and membrane fluidity. The Plant Journal, 23, 785–794.Qu T T, Chen L Y, Zhang Z H, Hu Z L, Li P, Zhu L H, Zhu Y G. 2003. Molecular mapping of genes conferring cold tolerance at seedling stage using doubled haploid lines from an indica×japonica cross in rice. Journal of Wuhan Botanical Research, 21, 385–389. (in Chinese)Rahman L, Khanam M S, Koh H J. 2008. QTL analysis for yield related traits using populations derived from an indica japonica hybrid in rice (Oryza sativa L.). Czech Journal of Genetics and Plant Breeding, 44, 93–104.Saito K, Hayano-Saito Y, Maruyama-Funatsuki W, Sato Y, Kato A. 2004. Physical mapping and putative candidate gene identification of a quantitative trait locus Ctb1 for cold tolerance at the booting stage of rice. Theoretical and Applied Genetics, 109, 515–522.Suh J P, Lee C K, Lee J H, Kim J J, Kim S M, Cho Y C, Park S H, Shin J C, Kim Y G, Jena K K. 2012. Identification of uantitative trait loci for seedling cold tolerance using RILs derived from a cross between japonica and tropical japonica rice cultivars. Euphytica, 184, 101–108.Tan L B, Liu F X, Xue W, Wang G J, Ye S, Zhu Z F, Fu Y C, Wang X K, Sun C Q. 2007. Development of Oryza rufipogon and O. sativa introgression lines and assessment for yield-related quantitative trait loci. Journal of Integrative Plant Biology, 49, 871–884.Wang S, Basten C J, Zeng Z B. 2007. Windows QTL cartographer 2.5. department of statistics, north carolina state university, raleigh, NC, USA. [2012-04-23]. http://statgen.ncsu.edu/qtlcart/WQTLCart.htmXia R X, Xiao N, Hong Y H, Zhang C, Su Y, Zhang X M, Chen J M. 2010. QTLs mapping for cold tolerance at seedling stage in Dongxiang Wild Rice (Oryza rufipogon Griff.). Scientia Agricultura Sinica, 43, 443–451. (in Chinese)Xiao N, Huang W N, Zhang X, Gao Y, Li A L, Dai Y, Yu L, Liu G Q, Pan C H, Li Y H, Dai Z Y, Chen J M. 2014. Fine mapping of qRC10-2, a quantitative trait locus for cold tolerance of rice roots at seedling and mature stages. PLOS ONE, 9, 95–104.Xie J, Agrama H A, Kong D, Zhuang J, Hu B, Wan Y, Yan W. 2010. Genetic diversity associated with conservation of endangered Dongxiang wild rice (Oryza rufipogon). Genetic Resources and Crop Evolution, 57, 597–609.Xie J K, Hu B L, Wan Y, Zhang T, Li X, Liu R N, Huang Y H, Dai L F, Luo X D. 2010a. Comparison of the drought resistance characters at seedling stage between Dongxiang common wild rice (Oryza rufipogon Griff.) and cultivars (Oryza sativa L.). Acta Eclolgica sinica, 30, 1665–1674.Xu L M, Zhou L, Zeng Y W, Wang F M, Zhang H L, Shen S Q, Li Z C. 2008. Identification and mapping of quantitative trait loci for cold tolerance at the booting stage in a japonica rice nearisogenic line. Plant Science, 174, 340–347. Yang T F, Zhang S H, Zhao J L, Huang Z H, Zhang G Q, Liu B. 2015. Meta-analysis of QTLs underlying cold tolerance in rice (Oryza sativa L.). Molecular Plant Breeding, 13, 1–15.Yoshida H, Kato A. 1994. Cold-induced accumulation of RNAs and cloning of cDNAs related to chilling injury in rice. Japanese Journal of Breeding, 44, 361–365.Zeng Y W, Yang S M, Cui H, Yang X J, Xu L M, Du J, Pu X Y, Li Z C, Cheng Z Q, Huang X Q. 2009. QTLs of cold tolerance-related traits at the booting stage for NIL-RILs in rice revealed by SSR. Genes & Genomics, 31, 143–154.Zhang S H, Zheng J S, Liu B, Peng S B, Leung H, Zhao J L, Wang X F, Yang T F, Huang Z H. 2014. Identification of QTLs for cold tolerance at seedling stage in rice (Oryza sativa L.) using two distinct methods of cold treatment. Euphytica, 195, 95–104.Zhang X, Zhou S X, Fu Y C, Zhen S, Wang X K. Sun C Q. 2006. Identification of a drought tolerant introgression line derived from Dongxiang common wild rice (O. rufipogon Griff.). Plant Molecular Biology, 62, 247–259.Zhang Y S, Luo L J, Liu T M, Xu C G, Xing Y Z. 2009. Four rice QTL controlling number of spikelets per panicle expressed the characteristics of single Mendelian gene in near isogenic backgrounds. Theoretical and Applied Genetics, 118, 1035–1044.Zhang Z H, Su L, Li W, Chen W, Zhu Y G. 2005. A major QTL conferring cold tolerance at the early seedling stage using recombinant inbred lines of rice (Oryza sativa L.). Plant Science, 168, 527–534. |