Agarwala R, Barrett T, Beck J, Benson D A, Bollin C, Bolton E, Bourexis D, Brister J R, Bryant S H, Canese K, Cavanaugh M, Charowhas C, Clark K, Dondoshansky I, Feolo M, Fitzpatrick L, Funk K, Geer L Y, Gorelenkov V, Graeff A, et al. 2018. Database resources of the National Center for Biotechnology Information. Nucleic Acids Research, 46, D8–D13.
Anderson C J, Oakeshott J G, Tay W T, Gordon K H J, Zwick A, Walsh T K. 2018. Hybridization and gene flow in the mega-pest lineage of moth, Helicoverpa. Proceedings of the National Academy of Sciences of the United States of America, 115, 5034–5039.
Beckert A, Wiesner J, Schmidtberg H, Lehmann R, Baumann A, Vogel H, Vilcinskas A. 2016. Expression and characterization of a recombinant i-type lysozyme from the harlequin ladybird beetle Harmonia axyridis. Insect Molecular Biology, 25, 202–215.
Bradshaw C J, Leroy B, Bellard C, Roiz D, Albert C, Fournier A, Barbet-Massin M, Salles J M, Simard F, Courchamp F. 2016. Massive yet grossly underestimated global costs of invasive insects. Nature Communications, 7, 12986.
Chen W, Hasegawa D K, Kaur N, Kliot A, Pinheiro P V, Luan J, Stensmyr M C, Zheng Y, Liu W, Sun H, Xu Y, Luo Y, Kruse A, Yang X, Kontsedalov S, Lebedev G, Fisher T W, Nelson D R, Hunter W B, Brown J K, et al. 2016. The draft genome of whitefly Bemisia tabaci MEAM1, a global crop pest, provides novel insights into virus transmission, host adaptation, and insecticide resistance. BMC Biology, 14, 110.
Chen X G, Jiang X T, Gu J B, Xu M, Wu Y, Deng Y H, Zhang C, Bonizzoni M, Dermauw W, Vontas J, Armbruster P, Huang X, Yang Y L, Zhang H, He W M, Peng H J, Liu Y F, Wu K, Chen J H, Lirakis M, et al. 2015. Genome sequence of the Asian Tiger mosquito, Aedes albopictus, reveals insights into its biology, genetics, and evolution. Proceedings of the National Academy of Sciences of the United States of America, 112, E5907–E5915.
Cheng T C, Wu J Q, Wu Y Q, Chilukuri R V, Huang L H, Yamamoto K, Feng L, Li W S, Chen Z W, Guo H Z, Liu J Q, Li S L, Wang X X, Peng L, Liu D L, Guo Y B, Fu B H, Li Z Q, Liu C, Chen Y H, et al. 2017. Genomic adaptation to polyphagy and insecticides in a major East Asian noctuid pest. Nature Ecology & Evolution, 1, 1747–1756.
Chiu J C, Jiang X T, Zhao L, Hamm C A, Cridland J M, Saelao P, Hamby K A, Lee E K, Kwok R S, Zhang G J, Zalom F G, Walton V M, Begun D J. 2013. Genome of Drosophila suzukii, the spotted wing Drosophila. G3, 3, 2257–2271.
Deng W, Nickle D C, Learn G H, Maust B, Mullins J I. 2007. ViroBLAST: A stand-alone BLAST web server for flexible queries of multiple databases and user’s datasets. Bioinformatics, 23, 2334–2336.
Duvick J, Fu A, Muppirala U, Sabharwal M, Wilkerson M D, Lawrence C J, Lushbough C, Brendel V. 2008. PlantGDB: A resource for comparative plant genomics. Nucleic Acids Research, 36, D959–D965.
Early R, Bradley B A, Dukes J S, Lawler J J, Olden J D, Blumenthal D M, Gonzalez P, Grosholz E D, Ibanez I, Miller L P, Sorte C J B, Tatem A J. 2016. Global threats from invasive alien species in the twenty-first century and national response capacities. Nature Communications, 7, 12485.
Eddy S R. 2011. Accelerated profile HMM searches. PLoS Computational Biology, 7, e1002195.
Elton C S. 1958. The Ecology of Invasions by Animals and Plants. Methuen, London.
Finn R D, Coggill P, Eberhardt R Y, Eddy S R, Mistry J, Mitchell A L, Potter S C, Punta M, Qureshi M, Sangrador-Vegas A, Salazar G A, Tate J, Bateman A. 2016. The Pfam protein families database: towards a more sustainable future. Nucleic Acids Research, 44, D279–D285.
Gauthier J P, Legeai F, Zasadzinski A, Rispe C, Tagu D. 2007. AphidBase: A database for aphid genomic resources. Bioinformatics, 23, 783–784.
Di Genova A, Aravena A, Zapata L, Gonzalez M, Maass A, Iturra P. 2011. SalmonDB: A bioinformatics resource for Salmo salar and Oncorhynchus mykiss. Database, 2011, bar050.
Giraldo-Calderon G I, Emrich S J, MacCallum R M, Maslen G, Dialynas E, Topalis P, Ho N, Gesing S, VectorBase C, Madey G, Collins F H, Lawson D. 2015. VectorBase: An updated bioinformatics resource for invertebrate vectors and other organisms related with human diseases. Nucleic Acids Research, 43, D707–D713.
Grigoraki L, Pipini D, Labbe P, Chaskopoulou A, Weill M, Vontas J. 2017. Carboxylesterase gene amplifications associated with insecticide resistance in Aedes albopictus: Geographical distribution and evolutionary origin. PLoS Neglected Tropical Diseases, 11, e0005533.
Guerra-Assuncao J A, Enright A J. 2010. MapMi: Automated mapping of microRNA loci. BMC Bioinformatics, 11, 133.
Guo Q, Tao Y L, Chu D. 2013. Characterization and comparative profiling of miRNAs in invasive Bemisia tabaci (Gennadius) B and Q. PLoS ONE, 8, e59884.
Hu J T, Chen B, Li Z H. 2014. Thermal plasticity is related to the hardening response of heat shock protein expression in two Bactrocera fruit flies. Journal of Insect Physiology, 67, 105–113.
Huang C, Li Y Z, Yang N W, Wu Q, Xing L S, Qian W Q, Xi Y, Li F, Wan F H. 2019. Progresses in invasive insect genomics. Plant Protection, 45, 112–120. (in Chinese)
Huang Q X, Cheng X Y, Mao Z C, Wang Y S, Zhao L L, Yan X, Ferris V R, Xu R M, Xie B Y. 2010. MicroRNA discovery and analysis of pinewood nematode Bursaphelenchus xylophilus by deep sequencing. PLoS ONE, 5, e13271.
Khajuria C, Williams C E, El Bouhssini M, Whitworth R J, Richards S, Stuart J J, Chen M S. 2013. Deep sequencing and genome-wide analysis reveals the expansion of microRNA genes in the gall midge Mayetiola destructor. BMC Genomics, 14, 187.
Khalfallah Y, Bouktila D, Makni M, Makni H. 2015. Tracking microRNAs with a potential for virulence regulation in the pea aphid, Acyrthosiphon pisum Harris (Hemiptera: Aphidae), and the Asian citrus psyllid, Diaphorina citri Kuwayama (Hemiptera: Psyllidae). African Entomology, 23, 502–509.
Kozomara A, Griffiths-Jones S. 2014. miRBase: Annotating high confidence microRNAs using deep sequencing data. Nucleic Acids Research, 42, D68–D73.
Liu H M, Liu T, Xie L H, Wang X M, Deng Y H, Chen C H, James A A, Chen X G. 2016. Functional analysis of Orco and odorant receptors in odor recognition in Aedes albopictus. Parasites and Vectors, 9, 363.
Lowe T M, Chan P P. 2016. tRNAscan-SE On-line: Integrating search and context for analysis of transfer RNA genes. Nucleic Acids Research, 44, W54–W57.
McKenna D D, Scully E D, Pauchet Y, Hoover K, Kirsch R, Geib S M, Mitchell R F, Waterhouse R M, Ahn S J, Arsala D, Benoit J B, Blackmon H, Bledsoe T, Bowsher J H, Busch A, Calla B, Chao H, Childers A K, Childers C, Clarke D J, et al. 2016. Genome of the Asian longhorned beetle (Anoplophora glabripennis), a globally significant invasive species, reveals key functional and evolutionary innovations at the beetle-plant interface. Genome Biology, 17, 227.
Mishra R, Chiu J C, Hua G, Tawari N R, Adang M J, Sial A A. 2018. High throughput sequencing reveals Drosophila suzukii responses to insecticides. Insect Science, 25, 928–945.
Nguyen P, Kim A Y, Jung J K, Donahue K M, Jung C, Choi M Y, Koh Y H. 2016. The biochemical adaptations of spotted wing Drosophila (Diptera: Drosophilidae) to fresh fruits reduced fructose concentrations and glutathione S-transferase activities. Journal of Economic Entomology, 109, 973–981.
Papanicolaou A, Schetelig M F, Arensburger P, Atkinson P W, Benoit J B, Bourtzis K, Castanera P, Cavanaugh J P, Chao H, Childers C, Curril I, Dinh H, Doddapaneni H, Dolan A, Dugan S, Friedrich M, Gasperi G, Geib S, Georgakilas G, Gibbs R A, et al. 2016. The whole genome sequence of the Mediterranean fruit fly, Ceratitis capitata (Wiedemann), reveals insights into the biology and adaptive evolution of a highly invasive pest species. Genome Biology, 17, 192.
Pearce S L, Clarke D F, East P D, Elfekih S, Gordon K H J, Jermiin L S, McGaughran A, Oakeshott J G, Papanicolaou A, Perera O P, Rane R V, Richards S, Tay W T, Walsh T K, Anderson A, Anderson C J, Asgari S, Board P G, Bretschneider A, Campbell P M, et al. 2017. Genomic innovations, transcriptional plasticity and gene loss underlying the evolution and divergence of two highly polyphagous and invasive Helicoverpa pest species. BMC Biology, 15, 63.
Poelchau M, Childers C, Moore G, Tsavatapalli V, Evans J, Lee C Y, Lin H, Lin J W, Hackett K. 2015. The i5k Workspace@NAL-enabling genomic data access, visualization and curation of arthropod genomes. Nucleic Acids Research, 43, D714–D719.
Qin Z D, Chen J S, Jin L L, Duns G J, Ouyang P K. 2015. Differential expression of miRNAs under salt stress in Spartina alterniflora leaf tissues. Journal of Nanoscience and Nanotechnology, 15, 1554–1561.
Reynolds J A, Poelchau M F, Rahman Z, Armbruster P A, Denlinger D L. 2012. Transcript profiling reveals mechanisms for lipid conservation during diapause in the mosquito, Aedes albopictus. Journal of Insect Physiology, 58, 966–973.
Seebens H, Blackburn T M, Dyer E E, Genovesi P, Hulme P E, Jeschke J M, Pagad S, Pysek P, Winter M, Arianoutsou M, Bacher S, Blasius B, Brundu G, Capinha C, Celesti-Grapow L, Dawson W, Dullinger S, Fuentes N, Jager H, Kartesz J, et al. 2017. No saturation in the accumulation of alien species worldwide. Nature Communications, 8, 14435.
Seemann T, Booth T. 2018. BARNAP: Basic rapid ribosomal RNA predictor. [2018-05-03]. https://github.com/tseemann/barrnap
Smith C D, Zimin A, Holt C, Abouheif E, Benton R, Cash E, Croset V, Currie C R, Elhaik E, Elsik C G, Fave M J, Fernandes V, Gadau J, Gibson J D, Graur D, Grubbs K J, Hagen D E, Helmkampf M, Holley J A, Hu H, et al. 2011. Draft genome of the globally widespread and invasive Argentine ant (Linepithema humile). Proceedings of the National Academy of Sciences of the United States of America, 108, 5673–5678.
Sparks J T, Dickens J C. 2017. Mini review: Gustatory reception of chemicals affecting host feeding in aedine mosquitoes. Pesticide Biochemistry and Physiology, 142, 15–20.
Tang W Q, Yu L Y, He W Y, Yang G, Ke F S, Baxter S W, You S J, Douglas C J, You M S. 2014. DBM-DB: The diamondback moth genome database. Database, 2014, bat087.
Tian L, Song T, He R, Zeng Y, Xie W, Wu Q, Wang S, Zhou X, Zhang Y J. 2017. Genome-wide analysis of ATP-binding cassette (ABC) transporters in the sweetpotato whitefly, Bemisia tabaci. BMC Genomics, 18, 330.
Vogel H, Schmidtberg H, Vilcinskas A. 2017. Comparative transcriptomics in three ladybird species supports a role for immunity in invasion biology. Developmental and Comparative Immunology, 67, 452–456.
Wan F H, Yang N W. 2016. Invasion and management of agricultural alien insects in China. Annual Review of Entomology, 61, 77–98.
Wang X R, Wang C, Ban F X, Zhu D T, Liu S S, Wang X W. 2017. Genome-wide identification and characterization of HSP gene superfamily in whitefly (Bemisia tabaci) and expression profiling analysis under temperature stress. Insect Science, 26, 44–57.
Wang X R, Wang C, Wang X W, Qian L X, Chi Y, Liu S S, Liu Y Q, Wang X W. 2018. The functions of caspase in whitefly Bemisia tabaci apoptosis in response to UV irradiation. Insect Molecular Biology, 27, 739–751.
Wu N, Zhang S, Li X, Cao Y, Liu X, Wang Q, Liu Q, Liu H, Hu X, Zhou X J. 2018. Fall webworm genomes yield insights into rapid adaptation of invasive species. Nature Ecology & Evolution, 3, 105–115.
Wu Z Z, Bin S Y, He H L, Wang Z B, Li M, Lin J T. 2016a. Differential expression analysis of chemoreception genes in the striped flea beetle Phyllotreta striolata using a transcriptomic approach. PLoS ONE, 11, e0153067.
Wu Z Z, Zhang H, Bin S Y, Chen L, Han Q X, Lin J T. 2016b. Antennal and abdominal transcriptomes reveal chemosensory genes in the Asian citrus psyllid, Diaphorina citri. PLoS ONE, 11, e0159372.
Wurm Y, Uva P, Ricci F, Wang J, Jemielity S, Iseli C, Falquet L, Keller L. 2009. Fourmidable: A database for ant genomics. BMC Genomics, 10, 5.
Xie W, Yang X, Chen C, Yang Z, Guo L, Wang D, Huang J, Zhang H, Wen Y, Zhao J, Wu Q, Wang S, Coates B S, Zhou X, Zhang Y. 2018. The invasive MED/Q Bemisia tabaci genome: A tale of gene loss and gene gain. BMC Genomics, 19, 68.
Yang S, Zhang J H, Wang S, Zhang X X, Liu Y, Xi J H. 2017. Identification and profiling of miRNAs in overwintering Lissorhoptrus oryzophilus via next-generation sequencing. Cryobiology, 74, 68–76.
Yin C L, Shen G Y, Guo D H, Wang S P, Ma X Z, Xiao H M, Liu J D, Zhang Z, Liu Y, Zhang Y Q, Yu K X, Huang S Q, Li F. 2016. InsectBase: A resource for insect genomes and transcriptomes. Nucleic Acids Research, 44, D801–D807.
Yuan X, Jiang Y D, Wang G Y, Yu H, Zhou W W, Liu S, Yang M F, Cheng J, Gurr G M, Way M O, Zhu Z R. 2016. Odorant-binding proteins and chemosensory proteins from an invasive pest Lissorhoptrus oryzophilus (Coleoptera: Curculionidae). Environmental Entomology, 45, 1276–1286.
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