Austin D F. 2006. Foxtail millets (Setaria: Poaceae) - abandoned food in two hemispheres. Economic Botany, 60, 143–158.
Churchill G A, Doerge R W. 1994. Empirical threshold values for quantitative trait mapping. Genetics, 138, 963–971.
Couch B C, Fudal I, Lebrun M H, Tharreau D, Valent B, van Kim P, Notteghem J L, Kohn L M. 2005. Origins of host-specific populations of the blast pathogen Magnaporthe oryzae in crop domestication with subsequent expansion of pandemic clones on rice and weeds of rice. Genetics, 170, 613–630.
Deng Y, Zhai K, Xie Z, Yang D, Zhu X, Liu J, Wang X, Qin P, Yang Y, Zhang G, Li Q, Zhang J, Wu S, Milazzo J, Mao B, Wang E, Xie H, Tharreau D, He Z. 2017. Epigenetic regulation of antagonistic receptors confers rice blast resistance with yield balance. Science, 355, 962–965.
Diao X, Schnable J, Bennetzen J L, Li J. 2014. Initiation of Setaria as a model plant. Frontiers of Agricultural Science & Engineering, 1, 16–20.
Doust A, Diao X M. 2017. Genetics and Genomics of Setaria. Springer International Publishing, Switzerland.
Farfan I D, De La Fuente G N, Murray S C, Isakeit T, Huang P C, Warburton M, Williams P, Windham G L, Kolomiets M. 2015. Genome wide association study for drought, aflatoxin resistance, and important agronomic traits of maize hybrids in the sub-tropics. PLoS ONE, 10, e0117737.
Feng Z, Kang H, Li M, Zou L, Wang X, Zhao J, Wei L, Zhou N, Li Q, Lan Y, Zhang Y, Chen Z, Liu W, Pan X, Wang G, Zuo S. 2019. Identification of new rice cultivars and resistance loci against rice black-streaked dwarf virus disease through genome-wide association study. Rice, 12, 49.
Hoang G T, Van Dinh L, Nguyen T T, Ta N K, Gathignol F, Mai C D, Jouannic S, Tran K D, Khuat T H, Do V N, Lebrun M, Courtois B, Gantet P. 2019. Genome-wide association study of a panel of vietnamese rice landraces reveals new QTLs for tolerance to water deficit during the vegetative phase. Rice, 12, 4.
Huang X, Zhao Y, Wei X, Li C, Wang A, Zhao Q, Li W, Guo Y, Deng L, Zhu C, Fan D, Lu Y, Weng Q, Liu K, Zhou T, Jing Y, Si L, Dong G, Huang T, Lu T, et al. 2012. Genome-wide association study of flowering time and grain yield traits in a worldwide collection of rice germplasm. Nature Genetics, 44, 32–41.
Hwang E Y, Song Q, Jia G, Specht J E, Hyten D L, Costa J, Cregan P B. 2014. A genome-wide association study of seed protein and oil content in soybean. BMC Genomics, 15, 1.
Jia G, Huang X, Zhi H, Zhao Y, Zhao Q, Li W, Chai Y, Yang L, Liu K, Lu H, Zhu C, Lu Y, Zhou C, Fan D, Weng Q, Guo Y, Huang T, Zhang L, Lu T, Feng Q, et al. 2013. A haplotype map of genomic variations and genome-wide association studies of agronomic traits in foxtail millet (Setaria italica). Nature Genetics, 45, 957–961.
Kato H, Yamamoto M, Yamaguchi-Ozaki T, Kadouchi H, Iwamoto Y, Nakayashiki H, Tosa Y, Yayama S, Mori N. 2000. Pathogenicity, mating ability and DNA restriction fragment length polymorphisms of Pyricularia populations isolated from Gramineae, Bambusideae and Zingiberaceae plants. Journal of General Plant Pathology, 66, 30–47.
Li B, Zhang H, Yang X, Lv Y, Jiang P, Hao Z, Lv X, Wang H, Weng J. 2013. Genome-wide association study and candidate gene prediction of ear height in maize (Zea mays L.). Crops, 2, 35–40.
Li C, Wang D, Peng S, Chen Y, Su P, Chen J, Zheng L, Tan X, Liu J, Xiao Y, Kang H, Zhang D, Wang G, Liu Y. 2019. Genome-wide association mapping of resistance against rice blast strains in South China and identification of a new Pik allele. Rice, 12, 47.
Li W, Liu Y, Wang J, He M, Zhou X, Yang C, Yuan C, Wang J, Chern M, Yin J, Chen W, Ma B, Wang Y, Qin P, Li S, Ronald P, Chen X. 2016. The durably resistant rice cultivar Digu activates defense gene expression before the full maturation of Magnaporthe oryzae appressorium. Molecular Plant Pathology, 17, 354–368.
Li W, Zhu Z, Chern M, Yin J, Yang C, Ran L, Cheng M, He M, Wang K, Wang J, Zhu X, Chen Z, Wang J, Zhao W, Ma B, Qin P, Chen W, Wang Y, Liu J, Wang W, et al. 2017. A natural allele of a transcription factor in rice confers broad-spectrum blast resistance. Cell, 170, 114–126.
Li Z, Jia G, Li X, Li Y, Ma J, Zhi H, Tang S, Zhang S, Chai Y, Li Y, Diao X. 2016. Determination of standard varieties for identifying physiological races of foxtail millet blast fungus. Scientia Agricultura Sinica, 49, 3308–3318. (in Chinese)
Liang P, Li Y, Shen L. 1959. Studies on millet blast caused by Piricularia setariae Nishikado. Acta Phytopathologica Sinica, 5, 89–99. (in Chinese)
Liu H, Lin R, Xu A, Yang S, Li Z. 1990. Identification of millet blast resistance to foxtail millet germplasm resoures. Shanxi Agricultural Sciences, 3, 24–25. (in Chinese)
Liu P, Jin Y, Liu J, Liu C, Yao H, Luo F, Guo Z, Xia X, He Z. 2019. Genome-wide association mapping of root system architecture traits in common wheat (Triticum aestivum L.). Euphytica, 215, 121.
Lu P. 2006. Descriptors and Data Standard for Foxtail Millet Setaria Italica (L.) Beuauv.]. China Agriculture Press, Beijing. p. 18. (in Chinese)
de Oliveira L F V, Christoff A P, de Lima J C, de Ross B C F, Sachetto-Martins G, Margis-Pinheiro M, Margis R. 2014. The wall-associated Kinase gene family in rice genomes. Plant Science, 229, 181–192.
Ou S H. 1987. Rice Diseases Surrey. The Commonwealth Mycological Institute, China. pp. 109–201. (in Chinese)
Samayoa L F, Malvar R A, Olukolu B A, Holland J B, Butron A. 2015. Genome-wide association study reveals a set of genes associated with resistance to the Mediterranean corn borer (Sesamia nonagrioides L.) in a maize diversity panel. BMC Plant Biology, 15, 35.
Tosa Y, Chuma I. 2014. Classification and parasitic specialization of blast fungi. Journal of General Plant Pathology, 80, 202–209.
Tosa Y, Tamba H, Tanaka K, Mayama S. 2006. Genetic analysis of host species specificity of Magnaporthe oryzae isolates from rice and wheat. Phytopathology, 96, 480–484.
Turner S D. 2014. qqman: An R package for visualizing GWAS results using QQ and manhattan plots. Biorxiv, 005165.
Valent B, Khang C H. 2010. Recent advances in rice blast effector research. Current Opinion in Plant Biology, 13, 434–441.
Wang C, Yang Y, Yuan X, Xu Q, Feng Y, Yu H, Wang Y, Wei X. 2014. Genome-wide association study of blast resistance in indica rice. BMC Plant Biology, 14, 311.
Wang Y, Chu J, Song Y, Xie S, Yan W, Jin L, Liu H, Xie S. 1985. Screening tests of millet varieties for resistance to blast pathogen. Acta Phytophylacica Sinica, 12, 175–180. (in Chinese)
Weng J, Xie C, Hao Z, Wang J, Liu C, Li M, Zhang D, Bai L, Zhang S, Li X. 2011. Genome-wide association study identifies candidate genes that affect plant height in Chinese elite maize (Zea mays L.) inbred lines. PLoS ONE, 6, e29229.
Wu X. 1985. A preliminary study on the identification and screening of Millet Blast. Heilongjiang Agricultural Sciences, 46–50. (in Chinese)
Xiao N, Wu Y, Pan C, Yu L, Chen Y, Liu G, Li Y, Zhang X, Wang Z, Dai Z, Liang C, Li A. 2017. Improving of rice blast resistances in japonica by pyramiding major R genes. Frontiers in Plant Science, 7, 1918.
Xie S, Yan W, Jin X, Liu H, Hu J. 1984. A preliminary study on the varieties from Jilin Province resistance to Millet Blast. Jilin Agricultural Sciences, 2, 74–77. (in Chinese)
Yan W, Xie S, Jin X, Liu H, Hu J. 1985. A preliminary study on the physiological races of Millet Blast (Piricularia setariae Nishikado). Scientia Agricultura Sinica, 18, 57–62. (in Chinese)
Yan W, Xie S, Liu H, Li N. 1988. Evaluation for the specialized resistance of millet germplasm resources and elite Chinese varieties to Millet Blast in Jilin Province. Jilin Agricultural Sciences, 1, 6–10. (Chinese)
Yang K, Qi L, Zhang Z. 2014. Isolation and characterization of a novel wall-associated kinase gene TaWAK5 in wheat (Triticum aestivum). The Crop Journal, 2, 255–266.
Yang X, Zhang J, Perry L, Ma Z, Wan Z, Li M, Diao X, Lu H. 2012. From the modern to the archaeological: Starch grains from millets and their wild relatives in China. Journal of Archaeological Science, 39, 247–254.
Ye X, Li J, Cheng Y, Yao F, Long L, Wang Y, Wu Y, Li J, Wang J, Jiang Q, Kang H, Li W, Qi P, Lan X, Ma J, Liu Y, Jiang Y, Wei Y, Chen X, Liu C, et al. 2019. Genome-wide association study reveals new loci for yield-related traits in Sichuan wheat germplasm under stripe rust stress. BMC Genomics, 20, 640.
You Q, Zhang L, Yi X, Zhang Z, Xu W, Su Z. 2015. SIFGD: Setaria italica functional genomics database. Molecular Plant, 8, 967–970.
Zhang P, Zhong K, Zhong Z, Tong H. 2019. Genome-wide association study of important agronomic traits within a core collection of rice (Oryza sativa L.). BMC Plant Biology, 19, 259–271.
Zhao H, Wang X, Jia Y, Minkenberg B, Wheatley M, Fan J, Jia M H, Famoso A, Edwards J D, Wamishe Y, Valent B, Wang G, Yang Y. 2018. The rice blast resistance gene Ptr encodes an atypical protein required for broad-spectrum disease resistance. Nature Communications, 9, 2039.
Zuo W, Chao Q, Zhang N, Ye J, Tan G, Li B, Xing Y, Zhang B, Liu H, Fengler K A, Zhao J, Zhao X, Chen Y, Lai J, Yan J, Xu M. 2015. A maize wall-associated kinase confers quantitative resistance to head smut. Nature Genetics, 47, 151–157. |