Akanno E C, Schenkel F S, Sargolzaei M, Friendship R M, Robinson J A. 2014. Persistency of accuracy of genomic breeding values for different simulated pig breeding programs in developing countries. Journal of Animal Breeding and Genetics, 131, 367–378.Banville M, Riquet J, Bahon D, Sourdioux M, Canario L. 2014. Genetic parameters for litter size, piglet growth and sow’s early growth and body composition in the Chinese-European line Tai Zumu. Journal of Animal Breeding and Genetics, doi: 10.1111/jbg.12122Cleveland M A, Hickey J M, Forni S. 2012. A common dataset for genomic analysis of livestock populations. Gene Genomes Genetics, 2, 429–435.Ding X D, Zhang Z, Li X J, Wang S, Wu X P, Sun D X, Yu Y, Liu J F, Wang Y C, Zhang Y, Zhang S L, Zhang Y, Zhang Q. 2013. Accuracy of genomic prediction for milk production traits in the Chinese Holstein population using a reference population consisting of cows. Journal of Dairy Science, 96, 5315–5323.Van Eenennaam A L, Weigel K A, Young A E, Cleveland M A, Dekkers J C M. 2014. Applied animal genomics: Results from the field. Annual Review of Animal Biosciences, 2, 105–139.Falconer D S, Mackay T F C. 1996. Introduction to Quantitative Genetics. 4th ed. Longman, New York.Goddard M E, Hayes B J. 2009. Mapping genes for complex traits in domestic animals and their use in breeding programmes. Nature Reviews (Genetics), 10, 381–391.Harris B L, Johnson D L. 2010. Genomic predictions for New Zealand dairy bulls and integration with national genetic evaluation. Journal of Dairy Science, 93, 1243–1252.Harris B L, Montgomerie W A. 2009. Current status of the use of genomic information in the national genetic evaluation in New Zealand. In: Proceedings of the Interbull International Workshop in Genomic Information in Genetic Evaluations. Uppasla, Sweden. pp. 35–38.Hayes B J, Bowman P J, Chamberlain A J, Goddard M E. 2009. Invited review: Genomic selection in dairy cattle: Progress and challenges. Journal of Dairy Science, 92, 433–443.Henderson C R. 1975. Rapid method for computing the inverse of a relationship matrix. Journal of Dairy Science, 58, 1727–1730.Hsu W L, Johnson R K. 2014. Analysis of 28 generations of selection for reproduction, growth, and carcass traits in swine. Journal of Animal Science, 92, 4806–4822.Jiao S, Maltecca C, Gray K A, Cassady J P. 2014. Feed intake, average daily gain, feed efficiency, and real-time ultrasound traits in Duroc pigs: I. Genetic parameter estimation and accuracy of genomic prediction. Journal of Animal Science, 92, 2377–2386.Kapell D N R G, Ashworth C J, Knap P W, Roehe R. 2011. Genetic parameters for piglet survival, litter size and birth weight or its variation within litter in sire and dam lines using Bayesian analysis. Livestock Science, 135, 215–224.Li X, Kennedy B W. 1994. Genetic parameters for growth rate and backfat in Canadian Yorkshire, Landrace, Duroc, and Hampshire pigs. Journal of Animal Science, 72, 1450–1454.Lillehammer M, Meuwissen T H E, Sonesson A K. 2011. Genomic selection for maternal traits in pigs. Journal of Animal Science, 89, 3908–3916.Lillehammer M, Meuwissen T H E, Sonesson A K. 2013. Genomic selection for two traits in a maternal pig breeding scheme. Journal of Animal Science, 91, 3079–3087.Madsen P, Sørensen P, Su G, Damgaard L H, Thomsen H, Labouriau R. 2006. DMU - A package for analyzing multivariate mixed models. In: Proceedings of 8th World Congress on Genetics Applied to Livestock Production. Brasil. pp. 247–248.Meuwissen T H E, Hayes B J, Goddard M E. 2001. Prediction of total genetic value using genome-wide dense marker maps. Genetics, 157, 1819–1829.Ostersen T, Christensen O F, Henryon M, Nielsen B, Su G, Madsen P. 2011. Deregressed EBV as the response variable yield more reliable genomic predictions than traditional EBV in pure-bred pigs. Genetics Selection Evolution, 43, 38.R Core Team. 2014. R: A language and environment for statistical computing. In: R Foundation for Statistical Computing. Vienna, Austria.Ramos A M, Crooijmans R P, Affara N A, Amaral A J, Archibald A L, Beever J E, Bendixen C, Churcher C, Clark R, Dehais P, Hansen M S, Hedegaard J, Hu Z L, Kerstens H H, Law A S, Megens H J, Milan D, Nonneman D J, Rohrer G A, Rothschild M F, et al. 2009. Design of a high density SNP genotyping assay in the pig using SNPs identified and characterized by next generation sequencing technology. PLoS ONE, 4, e6524.Roehe R, Kennedy B W. 1995. Estimation of genetic parameters for litter size in Canadian Yorkshire and landrace swine with each parity of farrowing treated as a different trait. Journal of Animal Science, 73, 2959–2970.Sevon-Aimonen M L, Sternberg K, Ojala M. 1997. Genetic parameters for growth traits in pigs estimated using third degree polynomial functions. Agricultural and Food Science in Finland, 6, 1–10.Skorput D, Gorjanc G, Dikic M, Lukovic Z. 2014. Genetic parameters for litter size in Black Slavonian pigs. Spanish Journal of Agricultural Research, 12, 89–97.Tribout T, Larzul C, Phocas F. 2012. Efficiency of genomic selection in a purebred pig male line. Journal of Animal Science, 90, 4164–4176.Tribout T, Larzul C, Phocas F. 2013. Economic aspects of implementing genomic evaluations in a pig sire line breeding scheme. Genetics Selection Evolution, 45, 40.VanRaden P M. 2008. Efficient methods to compute genomic predictions. Journal of Dairy Science, 91, 4414–4423.VanRaden P M, Van Tassell C P, Wiggans G R, Sonstegard T S, Schnabel R D, Taylor J F, Schenkel F S. 2009. Invited review: Reliability of genomic predictions for North American Holstein bulls. Journal of Dairy Science, 92, 16–24.Zhang Z, Li X J, Ding X D, Li J Q, Zhang Q. 2015. GPOPSIM: A simulation tool for whole-genome genetic data. BMC Genetics, 16, 10.Zhang Z, Zhang Q, Ding X D. 2011. Advances in genomic selection in domestic animal. Chinese Science Bulletin, 56, 2655–2663. |