基于纳米孔全长转录组数据完善东方蜜蜂微孢子虫的基因组注释

陈华枝,范元婵,蒋海宾,王杰,范小雪,祝智威,隆琦,蔡宗兵,郑燕珍,付中民,徐国钧,陈大福,郭睿

Improvement of Nosema ceranae Genome Annotation Based on Nanopore Full-Length Transcriptome Data

HuaZhi CHEN,YuanChan FAN,HaiBin JIANG,Jie WANG,XiaoXue FAN,ZhiWei ZHU,Qi LONG,ZongBing CAI,YanZhen ZHENG,ZhongMin FU,GuoJun XU,DaFu CHEN,Rui GUO

表2 基于MISA的东方蜜蜂微孢子虫SSR的搜索结果

Table 2 Summary of searching result of N. ceranae SSRs based on MISA

MISA搜索项目 MISA searching item 数量 Number 搜索基因 Searching gene 8021 搜索基因的总序列长度 Total sequence length of searching gene (bp) 8265494 鉴定到的SSR位点 Identified SSR loci 1658 鉴定到的SSR总序列长度 Total sequence length of identified SSRs (bp) 1405 含有1个以上SSR的基因 Genes containing more than one SSR 212 混合SSR Mixed SSR 65 单核苷酸重复Single nucleotide repeat 1622 双核苷酸重复Dinucleotide repeat 23 三核苷酸重复Trinucleotide repeat 7 四核苷酸重复Tetranucleotide repeat 6