利用Target SSR-seq技术鉴定温州蜜柑芽变材料

胡冬梅,江东,李永平,彭磊,李冬云,朱延松,杨云光

Identification of Bud Sport Mutation of Satsuma Mandarin by Target SSR-seq Technology

HU DongMei,JIANG Dong,LI YongPing,PENG Lei,LI DongYun,ZHU YanSong,YANG YunGuang

表3 2个柑橘芽变材料的SSR和SNP基因型差异比较

Table 3 The differentiation SSR and SNP variation on two citrus bud sports variants

3.CHROM 3.POS 3.REF 3.ALT 7.ALT 3.DP 7.DP 3.AF 7.AF 3.SGACOV 7.SGACOV SCAFFOLD_2 9464551 A C 7955 .212 1688 SCAFFOLD_2 9464547 GAGAAGAAGAAGAAGA GAGAAGAAGAAGA GAGAAGAAGAAGA 7954 6366 .342 .397 2718 2528 SCAFFOLD_2 9464536 GAAA GA GA 7919 6328 .347 .409 2750 2590 SCAFFOLD_2 9464527 G C C 7914 6328 .366 .427 2894 2703 SCAFFOLD_2 9464521 A G 7912 .213 1689 SCAFFOLD_6 23400577 GTATTATTATTATTATT GTATTATTATTATTATTATTATT GTATTATTATTATTATTATTATT 5603 5709 .606 .373 3396 2131 SCAFFOLD_6 23400577 GTATTATTATTATTATT GTATTATTATTATTATTATTATT T 5603 5709 .606 .227 3396 1298