谷子抽穗时间基因SiTOC1的表达与单倍型变异分析

张林林,智慧,汤沙,张仁梁,张伟,贾冠清,刁现民

Characterizations of Transcriptional and Haplotypic Variations of SiTOC1 in Foxtail Millet

ZHANG LinLin,ZHI Hui,TANG Sha,ZHANG RenLiang,ZHANG Wei,JIA GuanQing,DIAO XianMin

图5 SiTOC1编码区结构变异 图上方为SiTOC1编码区基因结构,其中,框格代表外显子,框格之间的连接线代表内含子,下方对应不同单倍型组合信息表,连接上方SiTOC1编码区基因结构图的实心线指示变异位点,其中,红色连接线指示非同义突变,表格中不同颜色单元格代表不同碱基,其中,黄色、红色、蓝色和绿色单元格分别代表A碱基、T碱基、C碱基、G碱基,-：缺失,+：插入,符号后面的数字代表缺失或插入碱基数,Indel位点从左往右依次为：330(+6)/+gtgctg、336(+5)/+atgct、353(+1)/+t、398(+1)/+t、524(+1)/+t、661(+1)/+g、807(+11)/+gtgggttgctt、1099(+1)/+c、1359(+1)/+t、1381(+5)/+taatc、1437(+1)/+t

Fig. 5 Variations detected in SiTOC1 coding region Top of the figure is SiTOC1 gene coding region structure, the boxes represent exons, and the connecting lines between the boxes represent introns, the lower part corresponds to the different haplotype combination information table, the solid line connected to the gene structure diagram of the SiTOC1 coding region above indicates the mutation site, the red connecting line indicates the non-synonymous mutation, the different colored cells in the table represent different bases, the green, yellow, blue and red cells represent G, A, C, T bases, respectively, -: Stands for deletion, +: Stands for insertion, the number after the symbol stands for the number of bases deleted or inserted, the Indel position from left to right is: 330(+6)/+gtgctg, 336(+5)/+ atgct, 353(+1)/+t, 398(+1) /+t, 524(+1)/+t, 661(+1)/+g, 807(+11)/+gtgggttgctt, 1099(+ 1)/+c, 1359(+1)/+t, 1381(+5)/+taatc, 1437(+1)/+t