RTM-GWAS方法应用于大豆RIL群体百粒重QTL检测的功效
潘丽媛,贺建波,赵晋铭,王吴彬,邢光南,喻德跃,张小燕,李春燕,陈受宜,盖钧镒

Detection Power of RTM-GWAS Applied to 100-Seed Weight QTL Identification in a Recombinant Inbred Lines Population of Soybean
LiYuan PAN,JianBo HE,JinMing ZHAO,WuBin WANG,GuangNan XING,DeYue YU,XiaoYan ZHANG,ChunYan LI,ShouYi CHEN,JunYi GAI
表6 RTM-GWAS方法中检测到的与百粒重相关的候选基因体系
Table 6 The candidate gene system of 100-seed weight annotated from the detected QTLs using RTM-GWAS procedure
QTL 解释率
R2 (%)
候选基因
Candidate gene
SNP数目
No. of SNPs
GO注释
GO description
Sw-01-2 1.87 Glyma01g45220 6 胚胎发育Embryo Development
Sw-02-1 0.61 Glyma02g02860 1 PSII相关的光收集复合物II过程PSII associated light-harvesting complex II process
Sw-02-2 0.84 Glyma02g43960 2 种子休眠时胚胎发育终止Embryo development ending in seed dormancy
Sw-03-1 0.47 Glyma03g04020 1 多糖分解过程Polysaccharide catabolic process
Sw-03-2 0.54 Glyma03g33360 1 麦芽糖代谢过程Maltose metabolic process
Sw-04-1 0.74 Glyma04g11582 1 转运Transport
Sw-04-7 3.72 Glyma04g34070 1 响应镉离子Response to cadmium- ion
Sw-04-9 2.38 Glyma04g34660 1 脂肪酸代谢过程Fatty acid catabolic process
Sw-04-10 0.25 Glyma04g35511 1 转录的调节,依赖DNA Regulation of transcription, DNA-dependent
Sw-04-11 0.28 Glyma04g41810 2 蛋白质糖基化Protein glycosylation
Sw-05-1 0.82 Glyma05g23100 1
Sw-06-1 0.71 Glyma06g07880 2 种子休眠时胚胎发育终止Embryo development ending in seed dormancy
Sw-07-1 1.40 Glyma07g02940 3 ATP分解过程ATP catabolic process
Sw-08-1 3.61 Glyma08g21620 3 分生组织生长调节Regulation of meristem growth
Sw-08-2 1.10 Glyma08g24950 1 细胞生长Cell growth
Sw-09-1 1.38 Glyma09g00430 4 响应脱落酸Response to abscisic acid stimulus
Sw-09-3 1.04 Glyma09g32540 2 毒素分解过程Toxin catabolic process
Sw-10-1, 3.27 Glyma10g32920 2 种子发育Seed development
Sw-10-2 1.15 2
Sw-10-3 0.37 Glyma10g33160 1 花器官的形成Floral organ formation
Sw-11-1 0.99 Glyma11g01405 4 鸟苷四磷酸代谢过程Guanosine tetraphosphate metabolic process
Sw-11-2 7.57 Glyma11g07430 1 葡糖醛酸木聚糖代谢过程Glucuronoxylan metabolic process
Sw-12-1 0.98 Glyma12g31670 2 细胞过程规则Abaxial cell fate specification
Sw-12-3 0.13 Glyma12g35020 4 转录正调控Positive regulation of transcription
Sw-13-1 2.86 Glyma13g28260 1
Sw-14-1 1.65 Glyma14g01790 1 多糖生物合成过程Polysaccharide biosynthetic process
Sw-14-3 0.29 Glyma14g33820 1 花发育调节作用Regulation of flower development
Sw-14-4 1.79 Glyma14g35260 1 核转录mRNA分解代谢过程Nuclear-transcribed mRNA catabolic process
Sw-15-1 1.29 Glyma15g12410 4 蛋白质糖基化Protein glycosylation
Sw-16-5 0.64 Glyma16g20730 1 过渡金属离子转运Transition metal ion transport
Sw-17-1 2.45 Glyma17g04360 1
Sw-17-2 0.90 Glyma17g09961 3
Sw-18-1 1.86 Glyma18g02940 1 转录调控Regulation of transcription
Sw-18-3 0.89 Glyma18g46517 2
Sw-18-4 0.19 Glyma18g47240 1 表皮细胞分裂调节Regulation of epidermal cell division
Sw-18-5 2.98 Glyma18g50760 3 多糖生物合成过程Polysaccharide biosynthetic process
Sw-20-1 0.13 Glyma20g00565 4
共计Total 54.12 36