淅川乌骨鸡全基因组转座子的鉴定与分析

李东华,付亚伟,张晨曦,曹艳芳,李文婷,李转见,康相涛,孙桂荣

Genome-Wide Identification and Characterization of Transposable Elements in Xichuan Black-Bone Chicken

DongHua LI,YaWei FU,ChenXi ZHANG,YanFang CAO,WenTing LI,ZhuanJian LI,XiangTao KANG,GuiRong SUN

表2 淅川乌骨鸡全基因组转座子注释信息

Table 2 Annotation of TEs superfamilies in whole-genome resequencing assembly

分类 Class 类别 Order 超家族 Superfamily 数量 Counts 比对序列 Masked (bp) Masked序列所占比 Percentage of Masked (%） 逆转录转座子Retrotransposons LTR LTR 77112 34594642 2.81 ERVL 45563 18364082 1.49 ERV_classI 11039 5027391 0.41 ERV_classII 3659 2027848 0.16 SINE SINE 208 16102 0.01 LINE LINE 234961 79044697 6.43 LINE2 589 336996 0.03 L3/CR1 233726 78474296 6.38 DNA转座子 DNA transposons DNA DNA 36568 14908973 1.21 hAT-Charlie 8963 1578789 0.13 未分类 Unclassified 60019 25121370 2.04 总计 Total 635295 224900544 18.29