水稻根系盐胁迫响应miRNA和tRF的鉴定
孟淑君,张雪海,王琪月,张稳,黄力,丁冬,汤继华

Identification of miRNAs and tRFs in Response to Salt Stress in Rice Roots
ShuJun MENG,XueHai ZHANG,QiYue WANG,Wen ZHANG,Li HUANG,Dong DING,JiHua TANG
表3 水稻盐胁迫相关tRF的来源tRNA
Table 3 Source tRNA of tRFs related to salt stress in rice
来源tRNA基因编号
Gene ID of source tRNA
基因注释
Gene expression
位置
Loction
长度
Length
(bp)
序列
Sequence (5'-3')
NP-RPM
平均值
NP-RPM average value
NP-Na-RPM
平均值
NP-Na-RPM average value
Log2
(NP-Na/NP)
ENSRNA049444301 反密码子为UUC的谷氨酸
tRNA tRNA-Glu for anticodon UUC
12:25043392..25043429 38 GAAAGCCAGATAT
CCTAACCGGACTA
GACGACAATGGA
54.91457551 79.26862858 0.529560894
ENSRNA049444701 反密码子为UUC的谷氨酸
tRNA tRNA-Glu for anticodon UUC
12:2735598..2735634 37 GCCATTGTCGTCTA
GTCCGGTTAGGAT
ACCTGGCTTT
280.0756319 532.1395357 0.925988127
EPlORYSAT000373797 反密码子为UCC的谷氨酸
tRNA tRNA tRNA-Glu (UCC)
Pt:15650..15686 37 GCCCCTATCGTCTA
GTGGTTCAGGACAT
CTCTCTTTC
51.33846231 85.59087607 0.737416929
EPlORYSAT000373812 反密码子为GUG的组氨酸
tRNA tRNA-His (GUG)
Pt:81050..81087 38 GGCGGATGTAGC
CAAGTGGATCAAG
GCAGTGGATTGTG
27.04710805 62.75454797 1.214245673
EPlORYSAT000373840 反密码子为GUC的天门
冬氨酸
tRNA tRNA-Asp (GUC)
Pt:16231..16267 37 GGGATTGTAGTTC
AATTGGTCAGAGC
ACCGCCCTGTC
45.81324826 183.8090975 2.004371412
ENSRNA049445145 反密码子为CGC的丙氨酸
tRNA tRNA-Ala for anticodon CGC
8:22194244..22194280 37 GGGGACGTAGCTCATATGGTAGAGCGCTCGCTTCGCA 3.948187725 64.83354259 4.037477913
ENSRNA049444418 反密码子为UUC的谷氨酸
tRNA tRNA-Glu for anticodon UUC
12:27018602..27018639 38 TCACCCAGACGACCCGGGTTCAAATCCCGGCAATGGAA 8.877923176 86.56822355 3.285543425
ENSRNA049446755 反密码子为GCC的甘氨酸
tRNA tRNA-Gly for anticodon GCC
3:25619176..25619211 36 ACGGTACAGACCC
GGGTTCGATTCCC
GGCTGGTGCA
5.511015306 72.72375321 3.722036619
EPlORYSAT000373797 反密码子为UCC的谷氨酸
tRNA tRNA-Glu(UCC)
Pt:15686..15722 37 CAAGGAGGCAGCG
GGGATTCGACTTC
CCCTGGGGGTA
24.28546159 47.55822306 0.969601905
EPlORYSAT000373840 反密码子为GUC的天门
冬氨酸
tRNA tRNA-Asp(GUC)
Pt:16267..16304 38 CAAGGCGGAAGCT
GCGGGTTCGAGCC
CCGTCAGTCCCG
14.74937311 52.34254363 1.827330398