水稻根系盐胁迫响应miRNA和tRF的鉴定
|
|
孟淑君,张雪海,王琪月,张稳,黄力,丁冬,汤继华
|
Identification of miRNAs and tRFs in Response to Salt Stress in Rice Roots
|
|
ShuJun MENG,XueHai ZHANG,QiYue WANG,Wen ZHANG,Li HUANG,Dong DING,JiHua TANG
|
|
表 2 水稻盐胁迫响应差异表达miRNA
|
Table 2 Differentially expressed miRNAs in response to salt stress in rice
|
|
| miRNA | 染色体
Chr. | 起始
Start | 终止
End | 长度
Length
(bp) | 序列
Sequence (5'-3') | NP-RPM
平均值
Average of NP-RPM | NP-Na-RPM
平均值
Average of NP-Na-RPM | Log2
(NP-Na/NP) | 表达差异
Differential
expression | | osa-miR397a | 6 | 28489785 | 28489898 | 21 | UCAUUGAGUGCAGCGUUGAUG | 3385.00 | 273.09 | -3.631709 | 下调Down | | osa-miR397b | 2 | 3280781 | 3280898 | 21 | UUAUUGAGUGCAGCGUUGAUG | 14209.57 | 1461.91 | -3.280937 | 下调Down | | osa-miR1882e-3p | 10 | 10320904 | 10321044 | 24 | GAAAUGAUCUUGGACGUAAUCUAG | 3760.37 | 649.34 | -2.533830 | 下调Down | | osa-miR396f-5p | 2 | 35636546 | 35636721 | 22 | UCUCCACAGGCUUUCUUGAACU | 1173.18 | 321.53 | -1.867414 | 下调Down | | osa-miR396e-5p | 4 | 34436820 | 34437003 | 21 | UCCACAGGCUUUCUUGAACUG | 1173.18 | 321.53 | -1.867414 | 下调Down | | osa-miR156a | 1 | 22524147 | 22524246 | 20 | UGACAGAAGAGAGUGAGCAC | 2155.81 | 688.99 | -1.645684 | 下调Down | | osa-miR156b-5p | 1 | 4666341 | 4666516 | 20 | UGACAGAAGAGAGUGAGCAC | 2155.81 | 688.99 | -1.645684 | 下调Down | | osa-miR156c-5p | 1 | 4665975 | 4666123 | 20 | UGACAGAAGAGAGUGAGCAC | 2155.81 | 688.99 | -1.645684 | 下调Down | | osa-miR156d | 2 | 4512884 | 4513012 | 20 | UGACAGAAGAGAGUGAGCAC | 2155.81 | 688.99 | -1.645684 | 下调Down | | osa-miR156e | 4 | 25026327 | 25026430 | 20 | UGACAGAAGAGAGUGAGCAC | 2155.81 | 688.99 | -1.645684 | 下调Down | | osa-miR156f-5p | 8 | 21478230 | 21478415 | 20 | UGACAGAAGAGAGUGAGCAC | 2155.81 | 688.99 | -1.645684 | 下调Down | | osa-miR156g-5p | 2 | 8412516 | 8412618 | 20 | CGACAGAAGAGAGUGAGCAC | 2155.81 | 688.99 | -1.645684 | 下调Down | | osa-miR156h-5p | 8 | 21491232 | 21491417 | 20 | UGACAGAAGAGAGUGAGCAC | 2155.81 | 688.99 | -1.645684 | 下调Down | | osa-miR156i | 2 | 24119995 | 24120084 | 20 | UGACAGAAGAGAGUGAGCAC | 2155.81 | 688.99 | -1.645684 | 下调Down | | osa-miR156j-5p | 6 | 26554795 | 26554959 | 22 | GCUCGCUCCUCUUUCUGUCAGC | 2155.81 | 688.99 | -1.645684 | 下调Down | | osa-miR167d-5p | 7 | 4166404 | 4166295 | 21 | UGAAGCUGCCAGCAUGAUCUG | 2924.08 | 1169.08 | -1.322607 | 下调Down | | osa-miR167e-5p | 2 | 3742241 | 3742513 | 21 | UGAAGCUGCCAGCAUGAUCUG | 2924.08 | 1169.08 | -1.322607 | 下调Down | | osa-miR167f | 10 | 14723044 | 14723156 | 21 | UGAAGCUGCCAGCAUGAUCUG | 2924.08 | 1169.08 | -1.322607 | 下调Down | | osa-miR167g | 3 | 3347682 | 3347763 | 21 | UGAAGCUGCCAGCAUGAUCUG | 2924.08 | 1169.08 | -1.322607 | 下调Down | | osa-miR167h-5p | 12 | 25480618 | 25480737 | 21 | UGAAGCUGCCAGCAUGAUCUG | 2924.08 | 1169.08 | -1.322607 | 下调Down | | osa-miR167i-5p | 6 | 27674749 | 27674949 | 21 | UGAAGCUGCCAGCAUGAUCUG | 2924.08 | 1169.08 | -1.322607 | 下调Down | | osa-miR167j | 1 | 32686068 | 32686227 | 21 | UGAAGCUGCCAGCAUGAUCUG | 2924.08 | 1169.08 | -1.322607 | 下调Down | | osa-miR1432-5p | 7 | 23401702 | 23401810 | 21 | AUCAGGAGAGAUGACACCGAC | 485.58 | 219.53 | -1.145259 | 下调Down | | osa-miR159f | 1 | 6693112 | 6693299 | 21 | CUUGGAUUGAAGGGAGCUCUA | 874.14 | 1817.05 | 1.055665 | 上调Up | | osa-miR159a.1 | 1 | 17681923 | 17682194 | 21 | UUUGGAUUGAAGGGAGCUCUG | 15079.03 | 32657.51 | 1.114871 | 上调Up | | osa-miR159b | 1 | 1215030 | 1215217 | 21 | UUUGGAUUGAAGGGAGCUCUG | 15079.03 | 32657.51 | 1.114871 | 上调Up | | osa-miR168a-5p | 2 | 1553154 | 1553240 | 21 | UCGCUUGGUGCAGAUCGGGAC | 398.64 | 916.89 | 1.201650 | 上调Up | | osa-miR1876 | 10 | 4833365 | 4833521 | 24 | AUAAGUGGGUUUGUGGGCUGGCCC | 1462.10 | 3609.01 | 1.303566 | 上调Up | | osa-miR1423-5p | 4 | 19715117 | 19715252 | 24 | AGGCAACUACACGUUGGGCGCUCG | 265.74 | 1720.74 | 2.694957 | 上调Up | | osa-miR164e | 3 | 10542157 | 10542288 | 21 | UGGAGAAGCAGGGCACGUGAG | 75.61 | 558.04 | 2.883783 | 上调Up | | osa-miR5077 | 3 | 14094752 | 14094842 | 19 | GUUCGCGUCGGGUUCACCA | 93.53 | 856.96 | 3.195773 | 上调Up |
|
|
|