利用WGCNA鉴定谷子内源脱落酸响应禾生指梗霉胁迫的共表达基因
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常国蓉,李任建,张琦,张育铭,韩渊怀,张宝俊
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Identification of Co-Expression Genes Related to Endogenous Abscisic Acid in Response to the Stress of Sclerospora graminicola by WGCNA in Foxtail Millet
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CHANG GuoRong,LI RenJian,ZHANG Qi,ZHANG YuMing,HAN YuanHuai,ZHANG BaoJun
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表1 谷子PYL和SnRK2基因家族成员基本信息
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Table 1 The basic information of PYL and SnRK2 gene family members in S. italica
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类型
Type | 基因编号
Gene ID | 染色体
Chromosome | 基因组位置
Genomic location | 氨基酸长度
Amino
acid (aa) | 等电点
pI | 分子量
Molecular weight (kD) | 总平均疏水指数
Average of hydropathicity | | PYL | Seita.1G013900 | 1 | 1185261-1188981 | 211 | 5.92 | 23.67 | -0.393 | | Seita.1G030500 | 1 | 2860241-2862675 | 201 | 5.97 | 21.72 | -0.338 | | Seita.3G072600 | 3 | 4600680-4602575 | 193 | 4.39 | 20.38 | -0.011 | | Seita.3G076200 | 3 | 4851939-4854302 | 205 | 5.91 | 22.16 | -0.233 | | Seita.3G207900 | 3 | 16201030-16202684 | 204 | 8.88 | 21.58 | -0.132 | | Seita.4G239500 | 4 | 36338582-36339202 | 206 | 6.71 | 22.14 | -0.220 | | Seita.5G140800 | 5 | 12377439-12378609 | 206 | 5.25 | 21.84 | -0.101 | | Seita.5G302400 | 5 | 35644268-35645327 | 175 | 4.93 | 18.81 | -0.210 | | Seita.5G369100 | 5 | 40592575-40593198 | 207 | 6.75 | 22.70 | -0.252 | | Seita.9G311900 | 9 | 36003871-36005478 | 207 | 5.24 | 22.13 | -0.195 | | Seita.9G437300 | 9 | 48993016-48994206 | 220 | 6.58 | 22.92 | 0.036 | | SnRK2 | Seita.1G190000 | 1 | 27251818-27256180 | 454 | 8.49 | 51.77 | -0.605 | | Seita.2G394500 | 2 | 45956776-45961725 | 339 | 5.30 | 38.47 | -0.177 | | Seita.3G003200 | 3 | 157270-159276 | 380 | 5.99 | 43.11 | -0.547 | | Seita.3G230400 | 3 | 19092668-19097929 | 360 | 5.68 | 41.77 | -0.546 | | Seita.3G369900 | 3 | 47387035-47389674 | 374 | 4.94 | 41.46 | -0.224 | | Seita.5G395400 | 5 | 42440116-42444731 | 362 | 6.06 | 42.33 | -0.619 | | Seita.7G100500 | 7 | 20312278-20317276 | 358 | 6.00 | 40.98 | -0.558 | | Seita.9G318200 | 9 | 36623246-36626468 | 333 | 5.48 | 37.93 | -0.467 | | Seita.9G079800 | 9 | 4716246-4721220 | 366 | 4.81 | 41.48 | -0.308 | | Seita.9G169200 | 9 | 11473484-11476494 | 362 | 4.73 | 40.73 | -0.283 | | Seita.9G379000 | 9 | 43841287-43845704 | 344 | 5.10 | 39.13 | -0.238 |
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