基于温带和热带玉米群体全基因组FST和XP-EHH的选择信号检测

杨宇昕,邹枨

Genome-Wide Detection of Selection Signal in Temperate and Tropical Maize Populations with Use of FST and XP-EHH

YANG YuXin,ZOU Cheng

表3 选择信号鉴定得到的候选基因功能注释

Table 3 The function annotation of candidate genes which obtained from the selection signatures

基因 Gene 染色体 Chromosome 物理位置 Position (Mb) FST值a FST value XP-EHH值b XP-EHH value 注释c Annotation GRMZM2G366434d 5 17.336—17.338 0.3688** 4.6263** AP2-ErEBP转录因子206,ereb206 AP2-EREBP-transcription factor 206, ereb206 GRMZM2G145579d 4 47.618—47.620 0.5071** 3.8724* bHLH转录因子165,bhlh165 bHLH-transcription factor 165, bhlh165 GRMZM2G023325 1 66.506—66.507 0.7845** 氧氮杂萘酮合成12,bx12 Benzoxazinone synthesis12,bx12 GRMZM2G074094 1 199.519—199.525 0.4380** SET结构域,sdg103 SET domain group 103, sdg103 GRMZM2G092091 1 220.057—220.061 0.4136** bHLH转录因子27,bhlh27 bHLH-transcription factor 27,bhlh27 GRMZM2G478417 1 272.109—272.113 0.3706** bZIP转录因子49,bzip49 bZIP-transcription factor 49,bzip49 GRMZM2G174834 4 159.692—159.694 0.3952** WRI1转录因子,wri2 WRI1 transcription factor2, wri2 GRMZM2G126505 4 185.907—185.912 0.3879** 脱落酸8'-羟化酶2,abh12 Abscisic acid 8'-hydroxylase2, abh12 GRMZM2G070523 5 20.219—20.221 0.3693** MYB转录因子129,myb129 MYB-transcription factor 129, myb129 GRMZM2G004334 6 109.244—109.247 0.5006** 同源框转录因子10,hb10 Homeobox-transcription factor 10, hb10 GRMZM2G170148 9 110.859—110.870 0.3954** MYB相关转录因子86,mybr86 MYB-related-transcription factor 86, mybr86 GRMZM2G156013 10 141.014—141.018 0.4835** 丝氨酸-苏氨酸激酶4,stk4 Serine-threonine kinase4, stk4 GRMZM2G143602 2 8.289—8.295 4.1470* CK2蛋白激酶α1,cka1 CK2 protein kinase alpha 1, cka1 GRMZM2G001289 2 15.033—15.035 3.7898* 同源框转录因子75,hb75 Homeobox-transcription factor 75, hb75 GRMZM2G102059 2 236.711—236.716 3.6779* ABI3-VP1转录因子12,abi12 ABI3-VP1-transcription factor 12, abi12 GRMZM2G089638 3 1.464—1.469 4.1762* TCP转录因子31,tcptf31 TCP-transcription factor 31, tcptf31 GRMZM2G087804 3 140.859—140.861 3.9809* 金色植物2,g2 Golden plant2, g2 GRMZM2G015875 4 47.618—47.620 4.5721* NMCP/CRWN同源因子1,nch1 NMCP/CRWN-Homologous1, nch1 GRMZM2G145579 4 161.101—161.108 3.8724* bHLH转录因子165,bhlh165 bHLH-transcription factor 165, bhlh165 GRMZM5G880069 5 184.337—184.342 3.8136* WRKY转录因子109,wrky109 WRKY-transcription factor 109, wrky109 GRMZM2G129783 6 106.637—106.640 3.7924* 五肽重复蛋白346,ppr346 Pentatricopeptide repeat protein346, ppr346 GRMZM2G387528 8 0.935—0.938 4.2271* 光敏色素作用因子3,pif3 Phytochrome interacting factor3, pif3 GRMZM2G028054 8 170.725—170.728 3.7593* MYB转录因子74,myb74 MYB-transcription factor 74, myb74 GRMZM2G009808 9 107.641—107.645 5.3817** 乌头酸梅3,aco30 Aconitase3, aco30 GRMZM2G139082 9 116.292—116.294 4.3570* 热冲击互补因子1,hscf1 Heat shock complementing factor1, hscf1 GRMZM2G013671 9 152.030—152.038 3.7187* β扩增蛋白5 Beta expansin5, expb5 GRMZM2G474769 10 78.160—78.161 4.8528** 下胚轴伸长蛋白1,lhy1 Late hypocotyl elongation protein ortholog1, lhy1 GRMZM2G180168 10 78.333—78.337 4.6254** ABI3-VP1转录因子23,abi23 ABI3-VP1-transcription factor 23, abi23