高粱苗期耐盐性转录组分析和基因挖掘

董明,再吐尼古丽·库尔班,吕芃,杜瑞恒,叶凯,侯升林,刘国庆

Transcriptome Analysis and Gene Mining of Salt Tolerance in Sorghum Seedlings (Sorghum bicolor L. Moench)

Ming DONG,Zaituniguli KUERBAN,Peng LÜ,RuiHeng DU,Kai YE,ShengLin HOU,GuoQing LIU

表3 高粱叶片转录组测序统计

Table 3 Sequencing statistics of transcriptomes in sorghum leaves

分类Classification 最大值Maximum 最小值Minimum 平均值Average 总序列标签Total reads 56174902 42082348 48578108 比对到基因组序列标签Mapped reads 44513494 33795753 37417638 比对到基因组序列标签比例Ratio of mapped reads (%) 79.74 76.27 78.33 GC含量GC content (%) 58.67 55.73 57.30 Q30碱基百分比Percentage of Q30 base (%) 93.29 92.40 92.89 已知转录本数Number of known gene 26628 新转录本数Number of novel gene 866