陆地棉扩展蛋白基因的鉴定与特征分析
张奇艳,雷忠萍,宋银,海江波,贺道华

Identification and Characterization of the Expansin Gene Family in Upland Cotton (Gossypium hirsutum)
QiYan ZHANG,ZhongPing LEI,Yin SONG,JiangBo HAI,DaoHua HE
表2 陆地棉扩展蛋白基因家族成员的鉴定
Table 2 Genome-wide identification of Expansin gene family in G. hirsutum
基因
Gene
序列号
Phytozome ID
染色体位置
Location
基因长度Length of gene (bp) 外显子个数Number of exon 氨基酸个数 Number of amino acids 信号
肽长度Signal peptide (aa)
分子量Molecular weight (kD) 理论等电点Theoretical pI 蛋白不稳定指数Instability index 脂溶指数Aliphatic index 总平均
疏水性GRAVY
GhEXPA03A Gh_A01G0477 GhA01: 7603263..7604881(+) 1619 3 256 27 28.40 9.90 43.09 67.85 -0.118
GhEXPA06A Gh_A03G0885 GhA03: 56794871..56796095(-) 1225 3 248 20 26.59 9.30 32.13 62.94 -0.140
GhEXPA16A Gh_A05G2385 GhA05: 29485491..29486507(-) 1017 3 253 25 26.94 7.53 30.72 59.8 -0.166
GhEXPA22-1A Gh_A05G3210 GhA05: 83889906..83890791(+) 886 2 262 22 29.18 9.25 20.09 68.47 -0.167
GhEXPA22-2A Gh_A05G3211 GhA05: 83905450..83906383(+) 934 2 278 23 30.96 9.24 18.98 74.64 0.008
GhEXPA21A Gh_A05G3493 GhA05: 90545166..90546162(+) 997 3 253 25 27.07 6.78 31.44 65.57 -0.066
GhEXPA14A Gh_A06G0018 GhA06: 82222..83190(+) 969 3 255 23 27.38 9.15 26.88 67.76 -0.015
GhEXPA01A Gh_A07G1208 GhA07: 26997118..26998121(-) 1004 3 258 NO 27.92 9.70 38.52 65.81 -0.140
GhEXPA02A Gh_A07G1881 GhA07: 74202971..74204340(-) 1370 3 253 21 27.52 9.40 38.41 77.79 -0.025
GhEXPA05A Gh_A08G1595 GhA08: 94460350..94461323(+) 974 3 267 NO 29.21 8.38 30.56 65.43 0.045
GhEXPA07A Gh_A09G0135 GhA09: 3242057..3243766(+) 1710 3 256 21 28.16 9.22 41.30 68.52 -0.160
GhEXPA08A Gh_A09G1727 GhA09: 70679591..70680590(-) 1000 3 265 28 28.73 8.59 32.02 60.79 -0.005
GhEXPA20A Gh_A10G1606 GhA10: 86603436..86604481(-) 1046 3 253 25 27.00 7.55 33.15 62.89 -0.118
GhEXPA19A Gh_A10G2323 scaffold2672_A10: 149124..150059(-) 936 3 258 30 27.94 8.36 29.01 62.83 -0.090
GhEXPA09A Gh_A11G0187 GhA11: 1736060..1737333(+) 1274 4 265 NO 29.26 9.42 29.16 66.26 -0.040
GhEXPA10A Gh_A11G0964 GhA11: 10482352..10483322(-) 971 3 258 NO 28.42 9.43 33.85 66.98 -0.229
GhEXPA11A Gh_A11G2155 GhA11: 71713430..71714457(-) 1028 3 247 20 26.39 9.32 38.00 69.55 -0.027
GhEXPA13A Gh_A12G1619 GhA12: 77299134..77300408(-) 1275 3 248 20 26.62 9.19 31.75 69.6 -0.030
GhEXPA23A Gh_A13G0050 GhA13: 540164..541646(+) 1483 3 254 26 27.28 8.41 33.34 63.39 -0.134
GhEXPA24A Gh_A13G0672 GhA13: 20543406..20544365(-) 960 3 248 17 26.26 9.28 32.55 67.3 -0.111
GhEXPA25A Gh_A13G0719 GhA13: 23714615..23715449(+) 835 2 254 27 28.23 8.33 27.99 75.24 -0.061
GhEXPA26A Gh_A13G2059 GhA13: 79891203..79892227(+) 1025 3 249 23 26.93 8.36 29.07 68.59 -0.064
GhEXPA03D Gh_D01G0492 GhD01: 5972132..5973758(+) 1627 3 252 NO 27.98 9.90 39.24 70.48 -0.078
GhEXPA06D Gh_D02G1269 GhD02: 41719506..41720746(-) 1241 3 267 NO 28.95 9.78 35.24 68.31 -0.104
基因
Gene
序列号
Phytozome ID
染色体位置
Location
基因长度Length of gene (bp) 外显子个数Number of exon 氨基酸个数 Number of amino acids 信号
肽长度Signal peptide (aa)
分子量Molecular weight (kD) 理论等电点Theoretical pI 蛋白不稳定指数Instability index 脂溶指数Aliphatic index 总平均
疏水性GRAVY
GhEXPA22D Gh_D04G0396 GhD04: 6280383..6281268(-) 886 2 262 23 29.21 9.18 20.03 68.47 -0.143
GhEXPA21D Gh_D04G1924 scaffold3943_D04: 15458..16477(-) 1020 3 253 25 27.08 8.02 32.54 65.57 -0.065
GhEXPA15D Gh_D05G2433 GhD05: 24370173..24371133(+) 961 3 255 23 27.45 8.88 29.40 67.02 -0.077
GhEXPA16D Gh_D05G2650 GhD05: 27568523..27569536(-) 1014 3 252 24 26.92 7.53 30.80 60.79 -0.130
GhEXPA17D Gh_D05G2934 GhD05: 34837918..34838746(-) 829 2 253 29 27.21 9.04 31.30 64.78 -0.122
GhEXPA01D Gh_D07G1309 GhD07: 20886446..20887308(-) 863 3 207 NO 22.54 9.90 35.72 67.83 -0.247
GhEXPA02D Gh_D07G2095 GhD07: 51074809..51076181(-) 1373 3 253 21 27.49 9.30 38.37 76.25 -0.044
GhEXPA04D Gh_D08G1362 GhD08: 44540800..44541775(-) 976 254 23 28.01 9.31 35.94 67.68 -0.187
GhEXPA05D Gh_D08G1905 GhD08: 56979061..56980034(+) 974 3 267 NO 29.32 8.08 29.33 66.14 0.037
GhEXPA07D Gh_D09G0128 GhD09: 3266295..3268335(+) 2041 4 303 NO 33.80 9.57 43.94 72.38 -0.164
GhEXPA08D Gh_D09G1840 GhD09: 45961349..45962346(-) 998 3 265 28 28.74 8.38 34.27 59.32 -0.006
GhEXPA19D Gh_D10G1145 GhD10: 18608318..18609246(+) 929 3 258 30 27.95 8.05 29.69 62.44 -0.106
GhEXPA20D Gh_D10G1861 GhD10: 52037144..52038189(-) 1046 3 253 25 27.07 7.55 33.33 65.97 -0.085
GhEXPA09D Gh_D11G0198 GhD11: 1728429..1729700(+) 1272 4 265 NO 29.17 9.41 28.62 64.83 -0.051
GhEXPA10D Gh_D11G1115 GhD11: 10243558..10244528(-) 971 3 258 NO 28.42 9.43 33.85 66.98 -0.229
GhEXPA11D Gh_D11G2459 GhD11: 49988580..49989605(-) 1026 3 247 20 26.35 9.30 36.98 69.15 -0.039
GhEXPA13D Gh_D12G1759 GhD12: 49966434..49967705(-) 1272 3 248 20 26.77 9.19 34.40 69.19 -0.016
GhEXPA23D Gh_D13G0060 GhD13: 622156..623599(+) 1444 3 254 26 27.36 8.61 29.33 58.78 -0.198
GhEXPA24D Gh_D13G0786 GhD13: 13599569..13600499(-) 931 3 248 17 26.33 9.30 31.82 65.69 -0.111
GhEXPA25D Gh_D13G0843 GhD13: 15386343..15387204(+) 862 2 254 27 28.19 8.53 28.55 73.7 -0.042
GhEXPA26D Gh_D13G2460 GhD13: 60483670..60484694(+) 1025 3 249 23 26.86 8.36 29.68 68.59 -0.067
GhEXPA17A Gh_Sca005793G01 scaffold5793: 5707..6535(+) 829 2 253 29 27.17 8.88 29.73 68.62 -0.076
GhEXPB2A Gh_A03G2139 scaffold729_A03: 85394..86864(+) 1471 4 267 26 29.31 8.63 35.29 75.96 -0.247
GhEXPB1A Gh_A08G1231 GhA08: 82800735..82801892(-) 1158 4 273 NO 28.60 5.19 37.99 70.07 0.000
GhEXPB3A Gh_A12G0861 GhA12: 57318819..57321212(-) 2394 5 256 NO 26.80 4.88 35.29 74.69 -0.083
基因
Gene
序列号
Phytozome ID
染色体位置
Location
基因长度Length of gene (bp) 外显子个数Number of exon 氨基酸个数 Number of amino acids 信号
肽长度Signal peptide (aa)
分子量Molecular weight (kD) 理论等电点Theoretical pI 蛋白不稳定指数Instability index 脂溶指数Aliphatic index 总平均
疏水性GRAVY
GhEXPB4A Gh_A12G1270 GhA12: 67653347..67655408(-) 2062 4 267 27 29.12 8.71 31.28 77.75 -0.137
GhEXPB2D Gh_D02G1839 GhD02: 61451593..61453105(+) 1513 4 275 34 30.25 8.98 34.08 76.22 -0.242
GhEXPB1D Gh_D08G1516 GhD08: 48665574..48666719(-) 1146 4 273 NO 28.61 5.03 33.99 69.71 -0.015
GhEXPB3D Gh_D12G0941 GhD12: 34578510..34580023(-) 1514 3 180 NO 18.92 5.03 30.62 83.44 0.032
GhEXPB4D Gh_D12G1393 GhD12: 43009111..43011170(-) 2060 4 267 27 29.09 8.71 31.74 76.29 -0.155
GhEXLA1A Gh_A01G1439 GhA01: 89104034..89105296(+) 1263 5 259 17 28.02 8.26 34.36 83.28 0.000
GhEXLA2A Gh_A03G2186 scaffold739_A03: 13564..15228(-) 1665 4 260 20 28.26 8.24 35.24 82.92 -0.029
GhEXLA3A Gh_A04G1065 GhA04: 60713119..60715274(+) 2156 5 259 18 28.10 8.59 29.34 81.39 -0.019
GhEXLA1D Gh_D01G1679 GhD01: 52783404..52784664(+) 1261 5 259 17 28.01 8.26 33.65 81.78 0.001
GhEXLA2D Gh_D02G2280 GhD02: 66566105..66567707(+) 1603 4 260 20 28.21 8.24 33.56 81.42 -0.050
GhEXLA3D Gh_D04G1670 GhD04: 48878933..48881117(+) 2185 5 259 18 28.13 8.59 29.82 80.27 -0.027
GhEXLB1A Gh_A03G0046 GhA03: 643878..645995(+) 2118 4 250 24 27.75 6.09 28.76 74.12 -0.153
GhEXLB2A Gh_A08G1444 GhA08: 90327706..90329016(-) 1311 5 256 24 27.85 4.81 31.94 82.62 -0.099
GhEXLB3A Gh_A08G1477 GhA08: 90994259..90995358(+) 1100 4 249 25 27.51 6.40 29.96 77.87 -0.139
GhEXLB4A Gh_A08G1478 GhA08: 91000911..91001970(+) 1060 4 248 NO 27.67 9.00 23.00 80.52 -0.158
GhEXLB6A Gh_A12G1923 GhA12: 81945320..81946466(-) 1147 5 249 21 27.08 4.65 35.69 84.98 -0.109
GhEXLB1D Gh_D03G1609 GhD03: 46020990..46023128(-) 2139 4 250 24 27.69 5.64 26.36 71.76 -0.174
GhEXLB2D Gh_D08G1739 GhD08: 53651905..53653218(-) 1314 5 256 24 27.90 4.66 32.35 82.62 -0.099
GhEXLB3D Gh_D08G1774 GhD08: 54163295..54164384(+) 1090 4 249 25 27.36 6.06 31.21 79.08 -0.113
GhEXLB4-1D Gh_D08G1775 GhD08: 54170354..54171413(+) 1060 4 248 NO 27.67 9.00 23.00 80.52 -0.158
GhEXLB4-2D Gh_D08G1776 GhD08: 54175086..54176147(+) 1062 4 248 25 27.55 8.96 25.58 80.52 -0.147
GhEXLB5D Gh_D08G1777 GhD08: 54180358..54181440(+) 1083 4 250 24 27.57 6.12 28.08 77.96 -0.104
GhEXLB6D Gh_D12G2103 GhD12: 54022894..54024050(-) 1157 5 249 21 27.12 4.65 36.35 85.38 -0.098