四倍体野生种花生A.monticola全基因组SSR的开发与特征分析
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王玉龙,黄冰艳,王思雨,杜培,齐飞艳,房元瑾,孙子淇,郑峥,董文召,张新友
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Development and Characterization of Whole Genome SSR in Tetraploid Wild Peanut (Arachis monticola)
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YuLong WANG,BingYan HUANG,SiYu WANG,Pei DU,FeiYan QI,YuanJin FANG,ZiQi SUN,Zheng ZHENG,WenZhao DONG,XinYou ZHANG
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表2 A. monticola、A. duranensis和A.ipaensis基因组SSR位点信息
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Table 2 Genome-wide SSR loci information of A. monticola, A. duranensis and A. ipaensis
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材料
Materials | 统计量
Statistic | 单核苷酸Mono-nucleotide | 2核苷酸Di-nucleotide | 3核苷酸Tri-nucleotide | 4核苷酸Tetra-nucleotide | 5核苷酸Penta-nucleotide | 6核苷酸Hexa-nucleotide | 总计
Total | | A.duranesis (AA) | 数目Amount | 29689 | 47805 | 42529 | 4988 | 7658 | 2860 | 135529 | 类型比例
Type ratio (%) | 21.91 | 35.27 | 31.38 | 3.68 | 5.65 | 2.11 | 100.00 | 平均距离
Average distance (kb) | 36.5 | 22.7 | 25.5 | 217.4 | 141.6 | 379.1 | 8.0 | | A.ipaensis (BB) | 数目Amount | 57589 | 75334 | 45717 | 6736 | 11092 | 3489 | 199957 | 类型比例
Type ratio (%) | 28.80 | 37.68 | 22.86 | 3.37 | 5.55 | 1.74 | 100 | 平均距离
Average distance (kb) | 23.5 | 18.0 | 29.6 | 201.0 | 122.1 | 388.0 | 6.7 | | A.moticola (AABB) | 数目Amount | 316197 | 208181 | 113794 | 12170 | 19552 | 6984 | 676878 | 类型比例
Type ratio (%) | 46.71 | 30.76 | 16.81 | 1.80 | 2.89 | 1.03 | 100.00 | 平均距离
Average distance (kb) | 8.3 | 12.6 | 23.0 | 215.2 | 133.9 | 375.0 | 3.8 | A.moticola
(A-subgenome) | 数目Amount | 114570 | 81364 | 46531 | 4664 | 7445 | 2816 | 257390 | 类型比例
Type ratio (%) | 44.51 | 31.61 | 18.08 | 1.81 | 2.89 | 1.09 | 100.00 | 平均距离
Average distance (kb) | 9.0 | 12.7 | 22.2 | 221.2 | 138.5 | 366.3 | 4.0 | A.moticola
(B-subgenome) | 数目Amount | 174453 | 118620 | 62638 | 7032 | 11358 | 3912 | 378013 | 类型比例
Type ratio (%) | 46.15 | 31.38 | 16.57 | 1.86 | 3.00 | 1.03 | 100.00 | 平均距离
Average distance (kb) | 8.5 | 12.5 | 23.7 | 210.7 | 130.5 | 378.8 | 3.9 |
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